The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	27282	78584	4103789	transposase,tRNA	Synechococcus_phage(25.0%)	49	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814398.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36948_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41317_42211_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43662_44613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45112_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62441_63278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64066_64384_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	232663	307007	4103789	transposase	uncultured_Mediterranean_phage(15.38%)	56	NA	NA
WP_010929591.1|232663_233614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233610_234801_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234922_235687_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|235773_236877_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237068_238085_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238366_238855_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240198_240879_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240940_241792_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817654.1|241788_242664_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242689_243583_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243594_245484_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245820_249594_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249590_250541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302770.1|250527_250695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|250849_251542_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251915_252416_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|252522_253443_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253459_253936_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254029_255880_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255935_256694_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|256721_258194_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258228_259008_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259020_259854_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815975.1|259862_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260632_261697_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261848_264476_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264539_267161_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268088_268547_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268825_271069_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271265_273290_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273413_274376_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274587_275727_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275749_276715_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276910_278101_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278114_278360_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278388_280410_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280456_282064_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282164_283334_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286215_287166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287189_288248_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288322_288697_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289251_290202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995443.1|290188_290329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929833.1|291758_292604_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292691_293855_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294273_295245_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295283_296711_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296830_297622_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297740_300194_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_003816023.1|300288_301404_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929554.1|301400_302810_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303215_303350_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303445_303817_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303813_304086_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304134_305826_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306056_307007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	489370	607265	4103789	transposase,tRNA	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|489370_490321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490419_491370_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492092_493367_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493453_494536_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494546_495359_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495395_495722_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495726_496287_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496527_497520_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497538_498534_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498549_499926_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499918_502300_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502316_502706_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502832_503063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503167_504118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504216_505167_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505163_506036_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506966_508253_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508306_509233_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_003815179.1|509251_509716_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|510558_511350_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511381_512002_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|511998_512628_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512640_513249_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513245_514235_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514340_515555_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517506_518457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519890_521177_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|521342_521651_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|521651_522317_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|522357_524148_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524260_525121_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|525117_526323_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526319_527204_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528720_529155_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529117_530116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530227_531373_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531447_532776_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532809_533400_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533689_534484_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535653_536388_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_076879643.1|536394_537222_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537268_539044_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539086_539584_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539880_540831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540929_541880_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542220_543171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545494_546643_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003817794.1|546687_547350_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547463_548456_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548452_549190_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|549269_550091_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550179_551043_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551169_551406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553380_554415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|554473_555451_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555458_556379_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556375_558076_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558078_558984_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559027_560161_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560289_561240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561338_563408_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563450_565553_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565859_566936_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567011_567896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568078_568501_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568510_569911_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569953_570859_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570957_572499_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572533_573073_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573085_573556_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573693_573936_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574052_574934_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575006_575327_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|576178_577129_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578452_579229_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579263_581036_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581037_581940_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582064_582424_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582455_583418_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_010929969.1|583516_584467_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584479_585415_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585474_586314_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586310_587480_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587476_588766_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588808_589183_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|589288_590026_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590033_590738_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591001_592522_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592577_593141_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593159_594191_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594187_594976_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|595151_596141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597897_598848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600070_600973_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600974_601829_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601875_602985_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602995_603514_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603543_604176_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604247_604907_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|604903_606124_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606392_607265_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	611679	675512	4103789	transposase,tRNA	Pandoravirus(12.5%)	50	NA	NA
WP_010931363.1|611679_612696_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612967_613594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|613649_614777_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614782_620500_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814281.1|620783_620999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814277.1|621067_622012_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622200_623136_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623253_624825_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624904_626113_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626610_627528_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629888_630110_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630440_631457_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631541_631793_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631796_632612_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632724_633603_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633714_635478_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635593_636934_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638003_639428_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639427_640129_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641633_642584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931358.1|642652_643651_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643655_644336_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644473_644866_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644973_645990_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646229_647015_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647109_648519_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648529_649330_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649350_650121_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|650163_650631_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650627_651578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653526_654405_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655331_658310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080501793.1|658263_658677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658663_659614_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659610_660699_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660734_661598_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|662737_663127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|663130_663913_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_033446332.1|663946_664699_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665007_666147_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666143_666935_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666931_667681_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667677_668550_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668549_669551_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669547_670711_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|670736_671420_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671373_672708_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672700_673795_+	CoA transferase	NA	NA	NA	NA	NA
WP_153302791.1|674398_674575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|674561_675512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	694423	771732	4103789	transposase,tRNA,protease,integrase	Bacillus_phage(20.0%)	59	741560:741578	761448:761466
WP_023995489.1|694423_695374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996329.1|695360_695510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931335.1|695472_696948_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698535_699423_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699425_700367_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700412_701978_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274099.1|703755_705039_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705263_706721_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_010931329.1|706684_707188_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	2.4e-24
WP_010931328.1|707212_708184_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|708236_708674_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708797_709466_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710194_711298_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|711403_712678_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712689_713715_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713716_715087_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|715087_716224_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716270_718196_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718192_719314_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719310_720465_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720461_721592_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721599_723165_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723171_724554_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724832_725444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725535_726951_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726968_727679_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727675_728998_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729077_731039_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731164_732478_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732586_733885_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734067_734976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734985_735195_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735206_736886_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736987_737941_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738031_738859_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738857_740744_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740740_741340_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741388_742288_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741560:741578	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274098.1|742514_743447_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	2.7e-42
WP_029443719.1|743569_744184_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_029443720.1|744261_744909_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744905_745688_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745760_746852_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747131_748259_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748600_749647_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|749794_752914_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752915_755867_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755882_757094_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|757090_757291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|757277_758228_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758244_758739_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758742_759000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853401.1|759024_760455_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_029443992.1|760536_760821_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761604_762555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761448:761466	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762973_765538_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765582_767436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|767768_769340_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|770781_771732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	1027068	1084731	4103789	transposase	Bacillus_virus(22.22%)	54	NA	NA
WP_005012067.1|1027068_1028019_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1028121_1028784_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1028878_1029049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1029401_1030403_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1030405_1031602_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1031622_1032426_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1032506_1032803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1032833_1033397_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1033437_1034295_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1034302_1035052_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1035073_1035946_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1035974_1036754_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1036787_1037585_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014486092.1|1039036_1040209_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	1.1e-59
WP_003808978.1|1040239_1040632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1040625_1041486_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1041489_1042452_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1043228_1043918_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1044778_1045729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1046078_1046948_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1047018_1047714_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1047703_1048213_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1048209_1049430_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1049377_1050280_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1051166_1052453_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1052491_1053865_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1053903_1054605_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1054903_1055893_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1055993_1056455_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1056470_1057019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1057160_1058636_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1058741_1059833_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1059836_1060619_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1060628_1061417_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1062542_1062977_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1062973_1063984_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1064027_1064954_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1065240_1065609_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_010931165.1|1066819_1069246_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1069294_1069987_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1070059_1071259_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1071276_1072182_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1072297_1073227_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1073252_1074599_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1074626_1075376_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1075389_1076172_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1076364_1077315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879583.1|1077376_1078522_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1078998_1079835_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1079904_1080870_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1080866_1081817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740747.1|1081803_1082010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1082202_1082745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1083780_1084731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	1089213	1151391	4103789	transposase	Bacillus_virus(16.67%)	59	NA	NA
WP_023852714.1|1089213_1090164_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1090160_1092269_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1092413_1093073_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1093104_1093569_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1093844_1094030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1094081_1094834_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1094840_1096103_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1096144_1097383_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1098460_1099588_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1099598_1100426_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1100412_1101279_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1102645_1103050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1103412_1104324_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1104338_1105049_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1105045_1106290_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1106291_1106726_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1106754_1107060_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_076879633.1|1106953_1107172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1107158_1108109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1108165_1109314_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1109394_1110345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1110876_1111674_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1111721_1112375_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1112331_1113420_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1113584_1115810_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1118087_1118984_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_076879632.1|1118872_1119118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1119104_1120055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931141.1|1120051_1121743_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_010931140.1|1121804_1123001_+	amidohydrolase	NA	NA	NA	NA	NA
WP_003814552.1|1123014_1123893_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929220.1|1123999_1125046_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814554.1|1125109_1125520_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814555.1|1125530_1127003_+	magnesium transporter	NA	NA	NA	NA	NA
WP_023996438.1|1127053_1127212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879579.1|1128145_1129438_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003813114.1|1129444_1130455_-	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931138.1|1130625_1131591_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_033446289.1|1131765_1132596_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813109.1|1132682_1132949_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_003820295.1|1132953_1133865_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_010931136.1|1133914_1135777_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003813103.1|1135933_1136731_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010926331.1|1136950_1137331_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813095.1|1137378_1137702_+	primosomal replication protein N	NA	NA	NA	NA	NA
WP_003813094.1|1137794_1138067_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_010931135.1|1138082_1138538_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813091.1|1138654_1139491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813089.1|1139487_1140861_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_010931134.1|1140881_1141850_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813085.1|1141929_1142907_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_023853657.1|1143011_1144691_-	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813079.1|1144770_1145235_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813077.1|1145237_1145690_-	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813076.1|1145786_1147094_+	alanine transaminase	NA	NA	NA	NA	NA
WP_003813074.1|1147090_1148395_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931131.1|1148391_1149798_+	threonine synthase	NA	NA	NA	NA	NA
WP_003813070.1|1150011_1150233_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_005012808.1|1150440_1151391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	1154943	1221410	4103789	transposase,protease	uncultured_Mediterranean_phage(25.0%)	50	NA	NA
WP_005012067.1|1154943_1155894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1156484_1157261_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1157378_1157642_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1157742_1158747_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1158947_1160549_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1160574_1161333_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1161424_1162081_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1162171_1162936_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1162945_1163134_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1163189_1164233_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1164229_1164643_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1164639_1165260_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1165540_1166491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1166658_1168050_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1168122_1168701_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1168817_1170215_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1170330_1171536_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1171635_1172154_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1172248_1172494_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1172721_1173036_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1173125_1178315_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1178311_1180480_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023995053.1|1180499_1182851_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_003820402.1|1182855_1184175_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1184193_1185867_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1185871_1186540_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1186696_1190518_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_005015810.1|1190848_1191799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1191820_1192966_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1193114_1194044_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1194040_1195129_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1195125_1195929_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1195925_1196657_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1196714_1198004_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1198100_1198703_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1203255_1203594_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1204301_1204568_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1206274_1207225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1207221_1208553_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247695.1|1209792_1211814_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1211806_1212448_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1212444_1212852_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1212848_1213649_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1213723_1214428_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1214459_1215254_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1215250_1216201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1216299_1217250_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1217348_1217783_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1217865_1220202_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1220393_1221410_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	1343665	1380431	4103789	transposase	Salmonella_phage(50.0%)	39	NA	NA
WP_005013747.1|1343665_1344616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1345237_1346965_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1347076_1348435_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_076879564.1|1348555_1348741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1348727_1349678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1349718_1350789_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1350811_1351690_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1351861_1352833_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1352995_1353838_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1353999_1354680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1354673_1355843_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1355839_1356871_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1356914_1358156_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1358190_1359723_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1359803_1360427_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1360457_1361069_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1361104_1361575_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1362006_1363011_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1363047_1364562_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1364565_1365525_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1365553_1366357_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1366358_1367993_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1368076_1369138_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1369336_1369606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1369609_1370134_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1370549_1371500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994671.1|1371496_1372567_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1372639_1373278_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1373572_1373800_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1373922_1374636_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1374880_1375831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302789.1|1375817_1375982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931009.1|1375934_1376216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1376330_1377779_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_153302788.1|1377762_1377903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1377889_1378840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1378836_1379286_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_023996094.1|1379332_1379494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929584.1|1379480_1380431_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	1469069	1519558	4103789	transposase,tRNA	Salmonella_phage(22.22%)	45	NA	NA
WP_005013747.1|1469069_1470020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219858.1|1470006_1470174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1470186_1470540_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1470552_1470915_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1470956_1471382_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1471584_1472841_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1473039_1474020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1474169_1475411_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1475509_1476460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1476468_1477164_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1479985_1480585_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1480595_1482761_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1482784_1484569_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1484568_1484658_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1485352_1485625_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1485624_1487691_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1487687_1488638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1488736_1489687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1489802_1490135_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1490131_1490818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1490804_1491764_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1491805_1494166_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1494165_1494798_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814028.1|1494860_1496240_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1496286_1497642_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814025.1|1497920_1498169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1498356_1498674_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1498946_1499462_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1499555_1499717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1499732_1500488_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1500826_1501033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1501040_1501700_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1501994_1504199_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1504309_1505533_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1505655_1506630_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1506697_1507891_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1507905_1508706_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1508702_1510559_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1510555_1511161_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1511179_1512565_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1513290_1514517_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1514605_1515388_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_076879548.1|1516531_1517482_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1517513_1518611_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1518607_1519558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	1563164	1629493	4103789	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1563164_1564115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1564121_1565234_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1565920_1567123_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1567326_1569987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1569999_1573404_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1574071_1576297_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1576343_1576670_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1576720_1577329_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1577427_1578378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1578447_1579212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1579208_1579808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1579911_1580757_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1580822_1581449_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1581445_1582396_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1582382_1582571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1582494_1583616_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1583596_1584598_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1584703_1586215_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1586211_1587516_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1587627_1588188_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1588455_1589010_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1589465_1589681_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1589935_1592533_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1592529_1593717_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1594375_1594990_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1595078_1596206_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1596217_1597123_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1597873_1598029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1598015_1598966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1599147_1599900_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1599968_1600628_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1600624_1601353_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1601365_1603645_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1603669_1603873_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1603914_1604562_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1604682_1605600_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1605596_1606310_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1606547_1607318_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1607322_1607922_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1608166_1609657_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1609715_1610000_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1609996_1610125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1610137_1610293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1610565_1611492_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1611628_1612369_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1612535_1613912_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1614093_1614999_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1616650_1618453_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1618570_1619221_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1619319_1620270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1620291_1621512_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1621697_1623110_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1623173_1624241_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1624237_1625728_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1625737_1626682_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1626841_1627540_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1627617_1628523_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1628542_1629493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	1665442	1721033	4103789	transposase	Brazilian_cedratvirus(25.0%)	49	NA	NA
WP_005013747.1|1665442_1666393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1666451_1667225_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1667217_1668774_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1668770_1669721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|1669707_1669863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810741.1|1671047_1671650_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1671889_1672591_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1672584_1673367_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1673551_1674502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302777.1|1674488_1674650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930483.1|1674600_1675338_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1675527_1676286_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1676332_1677322_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1677499_1678468_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1680007_1680976_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1680984_1681926_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1682399_1683410_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1683400_1684915_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1684911_1686258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1686260_1687295_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1687344_1688970_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1689522_1690473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1690577_1691525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1691578_1693393_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1693385_1694060_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1694189_1697264_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1697277_1697577_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1697891_1698515_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1698758_1699628_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1699605_1700550_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1700635_1701607_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1701674_1702448_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1702444_1703641_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1703671_1704622_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1704843_1705533_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1705597_1706353_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1706404_1707397_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1707406_1708360_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1708475_1709438_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1710839_1711268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1711264_1712215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1712508_1713231_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1713669_1714857_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1714860_1715241_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1716960_1717932_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1717945_1718659_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1718663_1719581_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1719687_1719984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1720082_1721033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	1742691	1834661	4103789	transposase,tRNA	Brevibacillus_phage(14.29%)	60	NA	NA
WP_005012067.1|1742691_1743642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905945.1|1743740_1744691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1744714_1745179_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1745325_1746534_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810870.1|1746544_1747015_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1747133_1748423_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1751163_1752114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1752212_1753229_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_077274084.1|1753395_1754442_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1754438_1755065_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1755061_1756114_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1756163_1756934_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1756984_1757821_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1758016_1758757_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1758831_1759575_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811719.1|1760236_1761010_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_003811716.1|1762147_1763437_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1765047_1766295_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1766304_1768014_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1768010_1768949_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1768945_1770229_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1770232_1770715_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1770715_1771702_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1771874_1772594_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1772710_1773661_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1776846_1778196_+	amidase	NA	NA	NA	NA	NA
WP_003816500.1|1778214_1779048_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1779181_1780057_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1780100_1783817_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1783825_1784455_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_019247159.1|1795728_1796166_+	protein FimA	NA	NA	NA	NA	NA
WP_010930611.1|1796415_1797150_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1797212_1799834_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_014486077.1|1799847_1800945_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1800937_1802692_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1804009_1804510_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_076879555.1|1804516_1805602_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1807047_1807539_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1807552_1808518_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247163.1|1808538_1809240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1810414_1810927_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1811005_1814629_+	5-oxoprolinase	NA	NA	NA	NA	NA
WP_010930622.1|1814642_1815674_-	peptidase C45	NA	NA	NA	NA	NA
WP_003809983.1|1816833_1817667_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_023853562.1|1817680_1818499_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1818600_1819593_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1819810_1820587_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1820694_1821477_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1821603_1823190_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1823214_1824078_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1824285_1825062_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1825054_1825564_-	cyclophilin	NA	NA	NA	NA	NA
WP_010930629.1|1825692_1826376_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1826615_1828076_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1828095_1828740_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1828776_1829742_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1829840_1830791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|1830851_1831886_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_003810012.1|1831958_1833251_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1833644_1834661_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	1954845	2024497	4103789	transposase,tRNA	Staphylococcus_phage(16.67%)	56	NA	NA
WP_003818515.1|1954845_1957503_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1957580_1958783_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1958779_1959292_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810262.1|1959414_1959753_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1960128_1961079_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1961177_1962128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1962291_1964187_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1964300_1964468_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1964531_1964768_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1965136_1966336_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1967851_1968802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1969253_1970255_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1970427_1971285_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1971281_1972544_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1972644_1973019_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_076879569.1|1973067_1974279_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1974363_1975134_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1975247_1976012_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023996008.1|1976127_1977264_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1977260_1978067_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1979811_1980783_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1980939_1981452_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1981610_1982585_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1983585_1984380_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1984405_1985212_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810329.1|1985322_1985913_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1985923_1987102_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1987204_1987579_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1987831_1989163_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1989229_1992460_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1993950_1994697_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1994781_1995243_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1995280_1996339_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1996301_1998131_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1998170_1998743_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015041331.1|2000167_2001079_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_010930728.1|2001307_2002630_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2002989_2003625_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2003584_2004535_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2005405_2006278_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2006355_2007495_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029443722.1|2007844_2009110_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2009115_2009643_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2009647_2010466_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2010465_2011188_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2011209_2011524_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_029443721.1|2011520_2012690_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2012720_2013596_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2013592_2014912_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2014984_2016181_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2016191_2017679_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2020273_2021173_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2021310_2022276_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2022374_2023325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2023368_2023560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2023546_2024497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	2035993	2085389	4103789	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2035993_2036944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2038081_2038378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2038552_2039905_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2040047_2041064_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2043043_2044057_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2044143_2045049_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2045205_2045550_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2045707_2046166_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2046179_2048396_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2048392_2049454_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2049482_2050457_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2050408_2051227_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2051239_2051848_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2052022_2052418_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2052436_2053876_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2053904_2054252_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2054270_2055221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2055207_2055369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2055873_2056824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2056907_2058725_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2058798_2059446_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2059458_2060388_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2060557_2061022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2061269_2061950_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2061998_2063690_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2063705_2064257_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2064253_2064625_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2064737_2065574_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2065584_2066109_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2066206_2066386_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_076879571.1|2066515_2067547_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2067620_2067977_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2067966_2068842_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2068940_2069825_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2069846_2071142_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2072090_2072741_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2072828_2074349_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2074606_2076472_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2077517_2078468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930769.1|2079440_2079800_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2079787_2081224_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2081220_2081874_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_076879572.1|2081870_2083070_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2083167_2084442_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2084438_2085389_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	2096593	2137284	4103789	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2096593_2097544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2097642_2098593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2098552_2098966_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2099250_2099550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816717.1|2099959_2102128_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.1e-36
WP_124740709.1|2102707_2102902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2102927_2104958_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2104977_2105190_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2105467_2106007_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930785.1|2106120_2107428_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2107492_2108650_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2108833_2109733_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2109751_2111056_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2111021_2112128_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2112215_2112452_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2112590_2113661_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2113664_2115020_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2115046_2116207_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2116209_2116848_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930792.1|2116849_2118154_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2118194_2119490_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2119496_2120003_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2119999_2121148_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2121175_2121601_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2121923_2124806_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2124898_2125654_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2126419_2127769_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2127867_2128818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2128916_2129867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2129940_2130414_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2130439_2131648_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2131644_2132418_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2132417_2133041_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2133206_2133467_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2133770_2134352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2134418_2134673_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2134659_2137284_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	2165067	2230616	4103789	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	59	NA	NA
WP_010929577.1|2165067_2166018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302779.1|2166004_2166163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930573.1|2166218_2167028_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2167152_2168103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2168099_2168993_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2169117_2169312_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2169311_2169653_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2169662_2171525_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2171654_2172167_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2172169_2172493_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2172494_2172905_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2172942_2174154_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2174171_2174684_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2174899_2175391_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2175643_2177680_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2177757_2178960_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003812472.1|2179010_2179739_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	2.8e-10
WP_005012067.1|2181296_2182247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2182817_2183030_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2183047_2183779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2183813_2184455_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_023853213.1|2184447_2185164_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2187328_2188105_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2188126_2189284_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2189280_2189712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063637.1|2189708_2190512_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_029443773.1|2190525_2190981_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2190993_2191965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2192030_2193254_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2193481_2194432_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2194555_2197009_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2197197_2198502_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2198606_2199260_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2199262_2200573_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2200751_2201330_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2201441_2201642_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2201987_2202554_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2202637_2202841_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2203147_2203468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2203509_2203791_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2203865_2205122_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2205504_2205834_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2207404_2208226_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2208225_2209365_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2209371_2210268_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2210264_2212190_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2212549_2215162_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2215214_2217515_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2217511_2218720_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2218981_2219356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2219352_2220303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2220401_2222396_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2222455_2223421_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2223410_2226272_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2226274_2226781_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2226885_2228094_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2228095_2229034_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2229195_2229669_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2229665_2230616_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	2316793	2380371	4103789	transposase,protease	uncultured_Caudovirales_phage(11.11%)	50	NA	NA
WP_010931070.1|2316793_2317744_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2318045_2318522_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2319145_2320783_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2320813_2322127_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2322260_2322578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2322678_2324001_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2323997_2324948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2325046_2325997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2326526_2327549_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2327577_2328408_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2328424_2330122_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2330186_2331263_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2331422_2332286_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2332316_2332886_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2332902_2333754_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2334811_2335693_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2335767_2336757_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2336819_2337770_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2337832_2338690_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2338749_2339238_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853651.1|2340786_2342001_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2341997_2343584_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2343602_2344670_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2344774_2346319_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2346738_2348313_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2348420_2349437_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2349433_2350273_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2350277_2351915_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2351911_2352862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996112.1|2352848_2352992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2353004_2354279_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_077274083.1|2354275_2354599_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2354671_2355685_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2355704_2356967_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2356969_2357893_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2357889_2359383_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2359393_2360326_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2360507_2361833_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2361867_2363223_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_010930860.1|2363283_2364882_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.8e-78
WP_010930861.1|2364958_2365690_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003813189.1|2365724_2367098_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2367113_2368025_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2368015_2368609_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2368670_2369057_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2369068_2369539_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2369550_2370174_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2370194_2372942_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_047122786.1|2379218_2379434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2379420_2380371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	2625833	2692333	4103789	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2625833_2626784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2627153_2627726_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2627728_2628739_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2628731_2629232_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2629242_2629584_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2629595_2630387_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2630403_2630673_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2630695_2631484_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2631530_2632547_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2632763_2634206_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2634384_2636004_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2636124_2637945_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2638023_2639556_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2639589_2641236_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2641305_2642328_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2642345_2643479_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2643481_2644171_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2644170_2644956_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2644999_2645764_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2645802_2647224_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2647289_2647994_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2648041_2648461_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2648473_2648881_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2649064_2649775_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2649901_2650192_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2650209_2650692_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2655197_2656352_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2656657_2657674_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2657920_2658709_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2658775_2659456_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2659452_2660223_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2660321_2661272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2661327_2662245_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2662255_2663434_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2663453_2664449_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2666037_2666646_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2666633_2667674_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2667691_2668654_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2668650_2669844_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2669840_2670638_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2670663_2671650_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2671668_2673708_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2673909_2674590_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2674603_2675515_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2675511_2676090_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2676228_2677134_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2677141_2680561_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2680548_2683149_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2684104_2684737_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2685130_2685889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2685885_2687088_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2687275_2688226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2689133_2690279_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930309.1|2690298_2691021_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2691137_2691317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2691382_2692333_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	2874736	3025442	4103789	transposase,holin,tRNA	uncultured_Mediterranean_phage(16.67%)	119	NA	NA
WP_010929956.1|2874736_2875687_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2875785_2876667_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2876744_2878124_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2878162_2879008_-	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|2879023_2879368_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2879370_2879907_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2880079_2880655_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2880757_2881495_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2881562_2883200_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2883307_2884063_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2884050_2885013_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2885114_2885915_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2885976_2888052_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2888216_2890592_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2890672_2892028_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2893506_2894229_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2894283_2895267_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2895396_2896347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2896343_2897246_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2897333_2898092_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248962.1|2898104_2899253_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2899293_2900721_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2900950_2902165_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2902210_2905081_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2907491_2907980_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2908105_2910802_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2910956_2913239_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2913403_2914036_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2914134_2915085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2915131_2915686_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2915753_2916599_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2916668_2917637_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2917636_2919433_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2921332_2925259_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930195.1|2925549_2925726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930194.1|2925994_2929225_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2929506_2930334_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2930367_2931063_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2931055_2932336_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2932345_2933323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2933304_2935005_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2935107_2936211_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2936241_2936997_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2937003_2938524_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2938566_2938869_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2938865_2939498_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2939576_2941442_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_010930187.1|2941438_2942254_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930186.1|2942261_2943377_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2944281_2945160_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2945159_2945984_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2946151_2947102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879621.1|2947284_2950164_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003812697.1|2950145_2950922_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2951014_2952478_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2952474_2952846_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2952863_2954177_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2954213_2954672_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2954784_2955735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2955731_2956745_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2956884_2957871_+	homoserine kinase	NA	NA	NA	NA	NA
WP_010930177.1|2957914_2958715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2959517_2960468_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995509.1|2960454_2960616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809618.1|2960619_2961222_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2961240_2961873_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930174.1|2962110_2963997_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2964015_2964858_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2964854_2966213_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2966433_2967228_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2967458_2968952_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2969187_2971269_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2971463_2972504_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2972638_2973655_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2973676_2974534_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2974578_2975355_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2975722_2976673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2976699_2977164_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2978370_2980659_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2980775_2981648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2981690_2982845_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2982879_2983710_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2983793_2985338_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2985380_2985740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2985741_2986155_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2986195_2986513_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2986597_2987314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2987577_2988999_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_155121021.1|2991526_2991685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2991671_2992622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2993194_2994211_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2994546_2995188_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2995278_2996715_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2996872_2997946_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2997942_2999079_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2999223_2999568_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2999634_3001515_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3001564_3002500_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3002832_3003849_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3004786_3006214_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3006210_3007233_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3007222_3007696_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_023995116.1|3007821_3008724_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3008720_3010364_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|3010360_3011368_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3012198_3013215_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3013314_3013947_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3013955_3014345_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3014397_3015450_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3016313_3017078_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_003811919.1|3017151_3017652_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3017666_3019724_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3019750_3020044_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3020145_3021093_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3021105_3021981_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3022101_3022662_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3022696_3023020_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3023455_3024193_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3024491_3025442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	3046393	3119935	4103789	transposase	Bacillus_virus(16.67%)	59	NA	NA
WP_010929969.1|3046393_3047344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3048434_3049610_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3049831_3051622_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3051634_3053296_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3053308_3056014_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3056306_3058061_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3058057_3058684_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3058680_3059532_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3059607_3061722_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_023853098.1|3061872_3062523_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3062668_3062920_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3062989_3064372_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3064368_3067548_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3068355_3069273_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3069324_3070056_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3070115_3070688_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3072196_3073213_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3073350_3074400_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3074504_3075455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3075550_3076276_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3076486_3076867_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3077172_3078045_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3078052_3078433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3078586_3079861_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3081348_3082257_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3083054_3084119_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3085955_3086990_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3087179_3087821_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3087903_3089730_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3089973_3090903_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3090902_3091652_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3091723_3092638_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3092657_3093803_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3093863_3094775_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3094855_3095806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3095904_3096489_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3096523_3097513_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3097509_3098451_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3098447_3099668_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3099710_3100025_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3100216_3100576_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_003821510.1|3100577_3102308_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3102480_3103152_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3103166_3104495_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3104491_3105391_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3105477_3106563_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3106555_3107689_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3107688_3110370_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3110740_3111322_+	OmpA family protein	NA	NA	NA	NA	NA
WP_077274086.1|3111399_3112173_+	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930092.1|3112169_3112847_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3113062_3114244_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3115016_3115199_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3115228_3116179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_124740670.1|3116165_3116420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566317.1|3116308_3116701_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3116977_3117889_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3118013_3118988_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3118984_3119935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	3251418	3320421	4103789	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3251418_3252369_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3252365_3253385_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3253394_3256103_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3256250_3256907_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_154219863.1|3256866_3257019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3257005_3257956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930014.1|3258061_3258997_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3259196_3260891_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3260925_3261852_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3261920_3263018_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3263036_3263900_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3263911_3264694_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3264690_3265809_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3265805_3267338_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3267378_3268386_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3268530_3269253_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3269268_3270291_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3270607_3271342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3271426_3273172_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3273168_3273921_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3273965_3274922_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3275010_3275577_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3275584_3276445_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_010930001.1|3276474_3277218_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.5e-32
WP_003807497.1|3277234_3277918_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3278755_3279670_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3279734_3280643_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3280733_3282158_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3282159_3283482_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3283478_3285617_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3285694_3290815_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3290915_3291224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3291293_3291851_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3291866_3293348_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3293402_3295256_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3295518_3296856_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3296890_3298888_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3298905_3300954_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3301084_3301951_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3302219_3303185_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3303299_3304448_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3304872_3305184_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3305217_3305478_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3305627_3306761_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3306831_3307968_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3308133_3308928_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3308990_3309434_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3309549_3310500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068980.1|3310486_3310675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020699729.1|3310622_3311030_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3311102_3313298_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313519_3314470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3314429_3314954_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3315085_3316057_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3316176_3318621_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3318636_3319227_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3319470_3320421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	3335867	3435979	4103789	tRNA,protease,transposase,tail,terminase	uncultured_Caudovirales_phage(13.79%)	110	NA	NA
WP_005012067.1|3335867_3336818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3337549_3337927_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3337911_3338613_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3338756_3339449_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3339448_3340552_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3340661_3343034_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3343030_3344590_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3344614_3345412_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3345443_3346589_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3346693_3348136_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_003814416.1|3348138_3349227_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3351505_3352456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879618.1|3352442_3352661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|3353585_3354143_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3354118_3354469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3354637_3355432_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3355428_3356478_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3356477_3357167_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3357253_3357751_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3357782_3359099_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3359115_3360090_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3360126_3360585_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3360584_3361265_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3361267_3361696_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3361748_3363479_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3363544_3364117_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3364097_3364784_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3365139_3365811_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010926433.1|3366360_3366642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879540.1|3366638_3367172_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3367153_3367705_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3367683_3367926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3367930_3368743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3368742_3369006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3369046_3369244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3369224_3369641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3369645_3373602_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3373594_3373984_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3373980_3374514_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3374581_3374941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3374950_3377563_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3377588_3377879_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3377896_3378226_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3378235_3378754_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3379008_3379509_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3379516_3379939_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3379935_3380334_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3380330_3380726_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3380725_3380926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3380927_3381410_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3381472_3381724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853024.1|3381733_3382381_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_005012808.1|3382398_3383349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3383777_3384380_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3384502_3384745_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3384750_3385806_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3385834_3387253_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3387255_3388533_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931448.1|3388519_3388969_-|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_005012067.1|3389644_3390595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3390612_3390834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|3390848_3391547_+	membrane protein	NA	NA	NA	NA	NA
WP_010931450.1|3391539_3391860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|3392339_3392951_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931452.1|3393016_3393229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3393480_3394431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3394529_3395603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3395770_3396565_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3396604_3397129_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3397121_3398864_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3399073_3399832_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3399834_3400542_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3400558_3401440_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3401450_3402209_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3402177_3402933_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3403002_3404421_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3404442_3405093_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3405226_3405562_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_023995786.1|3405502_3405664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931467.1|3406676_3408497_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3408501_3409575_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3409697_3410666_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3410739_3411651_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3411669_3412242_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3412322_3412871_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3412870_3414460_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3414529_3414769_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_003814219.1|3414809_3415841_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3415900_3417082_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3417178_3417631_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3417640_3418981_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3419297_3420335_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3420716_3421076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3421159_3422101_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3422175_3423126_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3423419_3424514_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3424595_3425477_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3425498_3426338_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3426413_3427931_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3428027_3429128_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3429144_3429567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814195.1|3429589_3429802_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3429848_3430769_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814191.1|3431032_3431701_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3431703_3432033_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3432239_3433673_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3433684_3434068_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3434129_3434930_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_154219861.1|3434877_3435042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|3435028_3435979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	3596646	3651620	4103789	transposase	Lake_Baikal_phage(20.0%)	45	NA	NA
WP_005012067.1|3596646_3597597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3597713_3598781_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3598856_3601985_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3602492_3603458_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3603460_3604132_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3604288_3605248_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3605255_3605918_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3605914_3606865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995938.1|3606851_3607043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929806.1|3606986_3608240_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3608217_3609180_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077274093.1|3609332_3609806_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3609805_3611038_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3611783_3612065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3612051_3613038_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3613181_3613586_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3613727_3617114_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3617144_3618608_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929798.1|3618604_3620245_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_029443819.1|3620354_3620990_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3621019_3621460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3621970_3622174_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3622349_3623255_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3623353_3624304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3624402_3625353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3627134_3628328_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3628393_3629422_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3629448_3630621_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3630746_3631724_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3631734_3632706_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3632772_3633558_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3633550_3634783_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3634978_3635734_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3635844_3636363_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3638151_3639552_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3639651_3639996_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3640084_3640555_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3640965_3641364_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3641495_3642446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3644890_3645625_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3646034_3646214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3646404_3647718_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3647733_3649245_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3649241_3650447_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3650642_3651620_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	3659431	3718899	4103789	transposase,tRNA	Streptococcus_phage(50.0%)	58	NA	NA
WP_010929577.1|3659431_3660382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879611.1|3660460_3661438_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|3661898_3662498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807867.1|3662566_3663559_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486054.1|3663608_3665198_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_014486053.1|3665238_3666135_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486052.1|3666131_3667838_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_003819219.1|3667942_3669184_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486051.1|3669180_3669951_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_014486050.1|3669999_3670701_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486049.1|3670627_3671611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3671709_3672660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_157737413.1|3672646_3672790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014906040.1|3672758_3673799_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_019248476.1|3674016_3674826_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486047.1|3676556_3677201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486046.1|3677197_3678418_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|3678440_3679436_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815840.1|3679508_3680714_-	CoA transferase	NA	NA	NA	NA	NA
WP_003815842.1|3680710_3680959_-	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_010927231.1|3680955_3681873_-	reductase	NA	NA	NA	NA	NA
WP_154219862.1|3681855_3682023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3682009_3682960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929781.1|3682956_3683529_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_010929780.1|3683525_3684464_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_100208326.1|3684588_3685065_+	YraN family protein	NA	NA	NA	NA	NA
WP_003815188.1|3685064_3685667_+	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.7e-17
WP_003815190.1|3685663_3686407_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003815191.1|3686403_3686895_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_010929779.1|3687035_3687824_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929778.1|3688085_3688988_+	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929777.1|3688987_3689734_+	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010927138.1|3689783_3690359_+	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929776.1|3690571_3692065_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010929775.1|3692075_3693131_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_003815198.1|3693156_3694293_-	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_003815201.1|3694289_3696242_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815202.1|3696255_3696819_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_010929773.1|3696805_3697690_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815204.1|3697778_3698822_-	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929772.1|3699052_3699361_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_010929771.1|3699363_3700902_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929770.1|3700904_3702359_+|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_003817729.1|3702472_3703180_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929768.1|3703284_3704073_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_076879616.1|3704444_3705839_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_023994714.1|3705875_3706514_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_010929765.1|3707562_3708513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994940.1|3708472_3709498_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010929763.1|3709689_3710430_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|3710644_3711655_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929762.1|3711673_3712153_-	heme-binding protein	NA	NA	NA	NA	NA
WP_010929761.1|3712177_3713638_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003815418.1|3713682_3714414_-	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929760.1|3714533_3716042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815420.1|3716272_3717016_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929759.1|3717114_3717837_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929969.1|3717948_3718899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	3742482	3858150	4103789	transposase,tRNA,protease	Bacillus_phage(12.5%)	103	NA	NA
WP_005013747.1|3742482_3743433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302769.1|3743419_3743569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814960.1|3743555_3744284_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_023852939.1|3744290_3745559_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3745555_3746389_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3746425_3747166_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3747285_3748461_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3748457_3749411_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3749424_3749826_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_019248876.1|3749818_3750496_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3750511_3750676_-	rubredoxin	NA	NA	NA	NA	NA
WP_003814984.1|3751636_3752290_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3752306_3753590_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3753829_3755455_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3755548_3755950_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3755974_3756409_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3756410_3758060_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3758100_3759270_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3759272_3760136_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3763499_3764204_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3764197_3764992_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3764988_3765954_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3765957_3766878_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3766974_3768138_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3768360_3769251_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3769254_3769758_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3769800_3770799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3770795_3771746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3771834_3772122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154299516.1|3772168_3772327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3772313_3773264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3773323_3773884_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3775386_3776268_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3776381_3777584_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3777712_3779572_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3779649_3780459_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3780529_3781531_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3781562_3782423_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3782622_3783627_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3783623_3785210_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3785218_3786145_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3786167_3786794_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3786892_3787843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3787839_3788976_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3789029_3789806_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3789830_3790289_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3790428_3791070_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3791134_3792517_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3792536_3793391_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3793549_3794161_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3794170_3794620_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3795138_3795279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3795286_3795448_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077069015.1|3795523_3795739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3795725_3796676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3797719_3797998_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_085964336.1|3799140_3799716_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929715.1|3799751_3801431_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3801427_3803179_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3803175_3803301_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3803314_3804469_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010929713.1|3804484_3806104_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3806187_3806733_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929711.1|3808972_3809953_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3809966_3811091_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3811098_3812853_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3812959_3813859_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3813923_3814907_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3815042_3816023_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3816039_3817431_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3817582_3818119_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3818049_3819435_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3819577_3820216_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3820302_3822192_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3822188_3823130_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3823235_3824285_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3824537_3825239_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3825235_3825934_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3825934_3827290_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3827286_3827778_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3827796_3828753_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3830163_3832266_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3832436_3833480_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3833523_3834267_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3835288_3835699_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3836648_3837446_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_153302767.1|3837384_3837558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930742.1|3837544_3838495_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3838491_3839442_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3839528_3840479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3840593_3841595_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3841685_3842252_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3842570_3844484_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3844525_3845956_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3846068_3847481_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3847497_3848193_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_127013037.1|3848224_3848425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3848411_3849362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3849386_3850286_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3850440_3850989_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3851027_3851747_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3851818_3854761_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3855354_3858150_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 29
NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4103789	4002857	4067769	4103789	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4002857_4003343_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003431_4003569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4003561_4004542_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4004808_4005618_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4005657_4006338_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006331_4006790_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4006801_4007164_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007246_4007930_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4007985_4008294_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008312_4008627_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4008623_4011098_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011105_4012497_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4012493_4012679_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4012657_4013359_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013355_4014177_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014157_4015282_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015274_4016294_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4016499_4017534_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4017634_4018426_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4018508_4018883_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4018860_4020270_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020262_4021645_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4021979_4023584_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4023619_4024633_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4024643_4025570_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4025960_4026911_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027080_4028307_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028506_4029373_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029365_4030328_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030428_4031379_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031477_4032428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032526_4033477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033473_4034967_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034963_4038071_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038067_4041136_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041132_4042383_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4042563_4043325_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043357_4044008_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044010_4044850_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045090_4045834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4045916_4046264_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046361_4047204_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047248_4048136_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048162_4048351_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048448_4049906_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049892_4051419_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051437_4051905_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4051904_4052927_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053047_4053788_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4053842_4054943_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054944_4056135_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056254_4057271_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057589_4058261_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058257_4059166_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059377_4060025_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4063876_4064953_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064963_4065773_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065862_4066636_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4066655_4066832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4066818_4067769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
