The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	27282	70036	4105292	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	77634	136108	4105292	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	164893	225368	4105292	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_024000654.1|184326_187965_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188025_188589_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188596_189019_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189046_189466_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189494_189941_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190067_190565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190719_192990_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193065_194271_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194369_195320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195422_196058_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196054_196948_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197342_198443_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198524_198899_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198958_201823_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201967_202708_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202777_203989_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204017_204986_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205599_206550_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206706_207030_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207134_208175_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208180_208960_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209005_209302_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209327_209603_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209659_210304_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210303_210990_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211188_211971_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212021_212747_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212778_214128_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214239_215172_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215629_218425_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219018_221862_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222032_222752_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222790_223339_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223493_224393_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224417_225368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	233300	286888	4105292	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233300_234251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234337_235288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235284_236235_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236333_237131_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238080_238491_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239512_240256_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240299_241343_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241513_243616_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245026_245983_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246001_246493_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246489_247845_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247845_248544_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248540_249242_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249494_250544_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250649_251591_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251587_253477_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253563_254202_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254344_255730_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255660_256197_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256348_257740_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257756_258737_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258872_259856_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259920_260820_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260926_262681_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262688_263813_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263826_264807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265537_266488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267047_267593_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267718_269296_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269311_270466_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270479_270605_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270601_272353_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272349_274029_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274091_274640_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275782_276061_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277104_278055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278041_278257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278332_278494_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279160_279610_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279619_280231_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280389_281238_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281263_282646_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282710_283352_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283491_283950_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|283974_284751_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284804_285941_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285937_286888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	390821	448330	4105292	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390821_391772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391908_392826_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392822_393071_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393067_394273_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394345_395341_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395363_396584_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396580_397225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398955_399765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400069_401023_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401121_402105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402031_402733_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402781_403552_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403548_404727_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404894_406601_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406597_407494_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407534_409124_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409173_410166_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410234_410834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411294_412275_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412350_413301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413389_414304_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414300_414960_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415049_415973_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|415978_416434_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416430_417534_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417492_417762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417721_419341_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419337_420396_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420525_421020_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421112_422090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422285_423491_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423487_424999_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425014_426328_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426518_426698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427107_427842_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430286_431237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431368_431767_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432177_432648_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432736_433081_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433180_434581_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436369_436888_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|436998_437754_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437949_439182_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439174_439960_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440026_440998_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441008_441986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442111_443284_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443310_444339_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444404_445598_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447379_448330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	589335	650527	4105292	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589335_590286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590761_591652_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591648_592470_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592670_593162_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593180_594254_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594300_595404_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595479_596100_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596120_596630_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596684_596936_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|596999_598133_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598140_598527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598523_601043_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601471_601810_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601806_602313_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602374_603175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603285_604227_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604320_605856_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607535_609386_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609389_610223_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610222_611164_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611415_612387_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612528_614817_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615123_616032_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616086_617052_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617126_618788_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618859_619570_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619536_619701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619718_620669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621367_621751_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621808_622411_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622428_622830_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622945_623857_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623853_624435_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625229_625964_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626004_627054_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627201_627780_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628166_629144_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629237_633632_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633832_634681_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634839_635652_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635707_636658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636756_637557_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637618_638002_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638013_639366_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639653_639983_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|639985_640735_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640917_641838_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641884_642097_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642119_642542_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642558_643659_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643755_645273_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645348_646188_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646209_647082_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647172_648267_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648560_649511_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649585_650527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	655851	702042	4105292	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655851_656877_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656917_657157_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657226_658816_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658815_659364_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659444_660017_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660035_660947_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661020_661989_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662111_663185_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663189_665010_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_033446132.1|666124_666460_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666593_667244_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667265_668684_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668753_669509_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669477_670236_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670246_671128_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671144_671852_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671854_672613_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672822_674565_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674557_675082_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675121_675916_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676083_677157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677255_678206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678457_678664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678735_679347_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679901_680153_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680145_680835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680852_681074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681091_682042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682682_683168_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683154_684432_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684434_685853_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685881_686937_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686942_687185_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687307_687910_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688338_689289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689963_690215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690277_690760_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690773_690962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690961_691357_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691353_691752_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691748_692171_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692178_692679_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692933_693452_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693461_693791_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693808_694099_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694124_696737_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696746_697106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697173_697707_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697703_698093_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698085_702042_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	708208	762138	4105292	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708208_709939_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|709991_710420_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710422_711103_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711102_711561_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711597_712572_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712588_713905_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713936_714434_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714520_715210_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715209_716259_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716255_717050_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717218_717569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717544_718102_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719231_720182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722319_723549_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723551_724994_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725098_726244_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726275_727073_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727097_728657_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728653_731026_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731135_732239_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732238_732931_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733074_733776_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733760_734138_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734869_735820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|735979_736852_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737192_737411_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737450_738830_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738871_740269_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740308_741961_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741964_742849_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742848_743790_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743868_745488_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745654_746470_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746537_747107_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747107_748058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748712_749810_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749843_751109_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751266_752217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752460_753051_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753066_755511_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755630_756602_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756733_757258_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757217_758168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758389_760585_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760657_761065_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761187_762138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	884727	952703	4105292	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884727_885744_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885940_886924_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888522_889911_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889941_890931_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891041_892274_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892555_893356_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893378_895610_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896397_896844_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896865_897612_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897755_898733_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899366_899978_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|899971_901189_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901329_902280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902276_902996_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903116_905276_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905366_905636_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905724_905931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905929_906457_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906475_907255_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907422_908439_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908511_909003_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909013_910729_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911892_912843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912839_914672_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915070_915730_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916257_916938_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917219_917936_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917950_919252_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921396_924285_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924508_925861_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925889_926411_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926407_927862_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927896_928145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928250_929126_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929151_930207_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930219_931011_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931043_932414_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933590_934541_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934593_934815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|934974_935187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935306_936425_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936521_936737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936930_937182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937294_938245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938241_938625_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938679_940494_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940643_941471_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941516_942497_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942493_942706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942702_943884_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944047_944782_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944783_947396_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947531_949445_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950060_950471_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950568_951654_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951752_952703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	996232	1068749	4105292	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996232_997183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997287_998337_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998474_999491_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1000999_1001572_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001631_1002363_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002414_1003332_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004139_1007319_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007315_1008698_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008767_1009019_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009164_1009779_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1009965_1012026_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012155_1013007_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013003_1013630_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013626_1015381_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015673_1018379_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018391_1020053_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020065_1021856_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022077_1023253_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023295_1024246_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024344_1025085_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025279_1027316_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027333_1028344_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028461_1029655_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029684_1030458_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030454_1031645_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031670_1032609_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032605_1034954_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035108_1035750_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037079_1037232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037263_1037812_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037830_1038316_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038493_1039432_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039434_1039752_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039797_1040742_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042422_1043073_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043126_1043462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043458_1044319_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044335_1044617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044690_1044954_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045197_1046148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046446_1047184_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047619_1047943_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1047977_1048538_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048658_1049534_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049546_1050494_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050595_1050889_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050915_1052973_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1052987_1053488_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053561_1055268_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056131_1057184_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057236_1057626_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057634_1058267_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058366_1059383_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060213_1061221_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061217_1062861_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062857_1063745_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063885_1064359_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064348_1065371_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065367_1066795_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067732_1068749_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	1072502	1134578	4105292	transposase,tRNA,holin	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1072502_1073639_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073635_1074709_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074866_1076303_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076393_1077035_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077370_1078387_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080429_1081380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082582_1084004_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084267_1084984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085068_1085386_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085426_1085840_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085841_1086201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086243_1087788_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087871_1088702_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088736_1089891_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089933_1090806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090922_1093211_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094417_1094882_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094908_1095859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095876_1096014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096226_1097003_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097047_1097905_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097926_1098943_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099077_1100118_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100312_1102394_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102629_1104123_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104353_1105148_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105368_1106727_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106723_1107566_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107584_1109471_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109412_1109664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109708_1110341_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110359_1110962_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111113_1112064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112644_1113352_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113710_1114697_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114836_1115850_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115846_1116797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116814_1116955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116909_1117368_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117404_1118718_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118735_1119107_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119103_1120567_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120707_1121436_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121417_1124267_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124479_1125430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125597_1126422_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126421_1127300_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128204_1129320_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129348_1130143_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130139_1132005_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132083_1132716_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132712_1133015_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133057_1134578_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	1152148	1218667	4105292	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1152148_1153945_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153944_1154913_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1154982_1155828_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155895_1156450_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156496_1157447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157545_1158178_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158342_1160625_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160779_1163476_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163601_1164090_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166500_1169371_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169416_1170631_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170860_1172288_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172385_1173477_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173489_1174248_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174335_1175238_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175234_1176185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176314_1177298_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177352_1178075_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179553_1180909_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1180989_1183365_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183529_1185605_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185666_1186461_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186568_1187531_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187518_1188274_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188381_1190019_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190086_1190824_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190926_1191502_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191674_1192211_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192243_1192558_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192573_1193419_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193457_1194837_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194914_1195796_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195894_1196845_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196841_1197252_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197359_1198214_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198206_1199169_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199214_1200339_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200444_1201323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201447_1202227_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202380_1203802_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204236_1205934_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206160_1207102_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207428_1208175_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208182_1209109_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209230_1210148_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210187_1211141_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211165_1211744_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213417_1214026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214103_1214457_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214540_1215530_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1215526_1215715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215732_1216683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216769_1217720_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1217716_1218667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	1291630	1328396	4105292	transposase	Salmonella_phage(50.0%)	36	NA	NA
WP_005013747.1|1291630_1292581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293202_1294930_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295041_1296400_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296456_1296675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296692_1297643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297683_1298754_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298776_1299655_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299826_1300798_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300960_1301803_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301964_1302645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302638_1303808_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303804_1304836_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304903_1306121_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306155_1307688_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307768_1308392_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308422_1309034_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309069_1309540_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1309971_1310976_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311012_1312527_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312530_1313490_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313518_1314322_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314323_1315958_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316041_1317103_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317301_1317571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317574_1318099_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318514_1319465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319461_1320496_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320604_1321243_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321537_1321765_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321887_1322601_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322845_1323796_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323935_1324181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324295_1325744_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325854_1326805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1326801_1327251_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1327445_1328396_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	1417038	1469191	4105292	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1417038_1417989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418006_1418159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418155_1418509_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418521_1418884_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418925_1419351_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419553_1420810_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421008_1421989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422138_1423380_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423478_1424429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424437_1425133_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427954_1428554_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428564_1430730_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430753_1432538_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432537_1432627_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433321_1433594_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433593_1435660_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435656_1436607_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436705_1437656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437771_1438104_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438100_1438787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438773_1439733_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439765_1442135_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442134_1442767_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442868_1444209_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444255_1445611_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445901_1446138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446325_1446643_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446915_1447431_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447701_1448457_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448795_1449002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449009_1449669_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449963_1452168_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452278_1453502_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453624_1454599_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454666_1455860_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455874_1456675_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456671_1458528_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458524_1459130_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459148_1460534_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461259_1462486_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462574_1463357_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463455_1464406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464432_1465206_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465217_1466459_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468240_1469191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	1513116	1581202	4105292	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1513116_1513605_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513722_1514301_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514406_1514775_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514873_1515824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515830_1516943_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517629_1518832_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1519035_1521696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1521708_1525113_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525780_1528006_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528052_1528379_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528429_1529038_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529136_1530087_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530156_1530921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1530917_1531454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531620_1532472_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532531_1533158_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533154_1534105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534203_1535316_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535305_1536307_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536412_1537924_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537920_1539225_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539336_1539897_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540164_1540719_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541174_1541390_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541644_1544242_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544238_1545426_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1546084_1546699_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1546787_1547909_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547926_1548832_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549724_1550675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550856_1551609_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551677_1552337_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552333_1553062_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553074_1555354_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555378_1555582_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555623_1556256_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556391_1557309_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557305_1558019_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558256_1559027_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559031_1559631_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559875_1561366_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561424_1561709_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1562274_1563201_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563337_1564078_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564244_1565621_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565802_1566708_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568359_1570162_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1570279_1570930_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571028_1571979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572000_1573221_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573406_1574819_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574882_1575950_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575949_1577437_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577446_1578391_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578550_1579249_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579326_1580232_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580251_1581202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	1617151	1672742	4105292	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617151_1618102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618160_1618934_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618926_1620483_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620479_1621430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622756_1623359_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623598_1624300_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624293_1625076_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625260_1626211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626309_1627047_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627236_1627995_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628041_1629031_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629208_1630177_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631716_1632685_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632693_1633635_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634108_1635119_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635109_1636624_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636620_1637967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1637969_1639004_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639053_1640679_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641231_1642182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642286_1643234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643287_1645102_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645094_1645769_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645898_1648973_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1648986_1649286_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649600_1650224_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1650467_1651337_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651314_1652259_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652344_1653271_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653383_1654163_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654153_1655350_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655380_1656331_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656552_1657242_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657306_1658062_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658113_1659106_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659115_1660069_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660184_1661147_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662548_1662977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1662973_1663924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1664217_1664940_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665378_1666566_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1666569_1666920_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668669_1669641_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669654_1670368_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670372_1671290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671396_1671693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671791_1672742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	1830508	1889778	4105292	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1830508_1831459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831583_1832393_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1832593_1833544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834817_1836035_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837091_1837994_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838070_1838943_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839073_1839442_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839499_1840546_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840741_1841998_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842002_1843340_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843489_1844446_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844548_1845481_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845596_1845917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1845909_1846269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846316_1847891_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847943_1848888_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848905_1849736_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849728_1851363_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851359_1852715_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853621_1855199_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855202_1856477_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856574_1856949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858664_1859798_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859835_1860441_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860437_1861256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861327_1863952_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863938_1864193_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864259_1864841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865144_1865405_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865570_1866194_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866193_1866967_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1866963_1868172_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868197_1868671_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1868744_1869695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1869793_1870744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1870842_1872192_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1872957_1873713_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1873805_1876688_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877010_1877436_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877463_1878612_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1878608_1879115_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1879130_1880417_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1880466_1881762_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1881763_1882402_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1882407_1883565_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1883591_1884947_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1884950_1886021_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886159_1886396_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886483_1887590_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1887555_1888860_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1888878_1889778_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	1900018	1944341	4105292	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1900018_1900969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901067_1902018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1902217_1903303_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903318_1904080_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1904076_1905000_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1905098_1905623_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1905631_1906375_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906470_1906710_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1906723_1906876_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1906961_1908452_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1908543_1909482_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909478_1909655_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1909657_1910320_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1911941_1912085_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912081_1913056_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1912950_1913205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|1913222_1914173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914169_1915444_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1915547_1916741_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1916737_1917391_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917387_1918824_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1918811_1919171_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1919985_1920126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1920143_1921094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922139_1924005_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924262_1925783_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925870_1926521_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927469_1928765_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928786_1929671_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929769_1930645_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930634_1930991_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931121_1932096_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932225_1932405_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932502_1933027_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933037_1933874_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1933986_1934358_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934354_1934906_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934921_1936613_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936661_1937342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937589_1938054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938223_1939153_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939165_1939813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939886_1941704_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941787_1942738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943390_1944341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	1974114	2038483	4105292	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974114_1975065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975286_1976237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976335_1977301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977438_1978338_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980932_1982420_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982430_1983627_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983699_1985019_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985015_1985891_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985921_1987070_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987087_1987402_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987423_1988146_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988145_1988964_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1988968_1989496_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989501_1990758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991116_1992256_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992333_1993206_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994076_1995027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1994986_1995622_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1995981_1997304_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997622_1998444_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999868_2000441_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000480_2002310_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002272_2003331_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003368_2003830_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003914_2004661_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006151_2009382_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009448_2010780_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011032_2011407_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011509_2012688_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012698_2013289_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013399_2014206_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014231_2015026_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016026_2017001_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017159_2017672_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017828_2018800_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020544_2021351_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2021347_2022649_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022599_2023364_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023477_2024248_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024332_2025520_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025592_2025967_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026067_2027330_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027326_2028184_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028356_2029358_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029809_2030760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032323_2033475_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033843_2034080_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034143_2034311_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034424_2036320_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036483_2037434_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037532_2038483_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	2131638	2183374	4105292	transposase,tRNA,protease	Lake_Baikal_phage(18.18%)	44	NA	NA
WP_023853569.1|2131638_2132907_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2133477_2133690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2133707_2134439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2134473_2135115_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2135107_2135776_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2137988_2138765_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2138786_2139944_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2139940_2140372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2140368_2141166_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2141185_2141587_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2141653_2142625_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2142690_2143914_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2144141_2145092_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2145215_2147669_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2147857_2149162_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2149266_2149920_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2149922_2151233_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2151411_2151990_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2152101_2152302_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2152647_2153214_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2153297_2153501_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2153807_2154128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2154169_2154451_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2154525_2155782_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2156164_2156494_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2158064_2158886_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2158885_2160025_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2160031_2160928_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2160942_2162850_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2163209_2165822_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2165874_2168175_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2168171_2169380_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2169641_2170016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2170012_2170963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171061_2173056_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173115_2174081_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174070_2176932_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176934_2177441_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177545_2178754_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178755_2179694_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179855_2180329_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180325_2181276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2181374_2182325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2182423_2183374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	2477019	2535263	4105292	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2477019_2477970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478449_2479106_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479120_2480788_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480790_2481420_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481631_2482726_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482870_2483683_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2483686_2485270_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2485440_2486571_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486757_2487834_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487915_2488566_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488580_2489984_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490267_2491086_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2491082_2491787_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492686_2493802_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493835_2494210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494232_2495390_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495402_2495636_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496270_2499240_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499254_2499464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499615_2500245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2500241_2502299_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502355_2503036_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503032_2503593_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503599_2504697_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504849_2505443_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505439_2506732_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506745_2507288_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507297_2508134_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508167_2509229_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509270_2510323_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510338_2510641_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510782_2511733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511750_2511915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511911_2513606_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513602_2514688_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514735_2515635_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515645_2516290_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517311_2520554_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520564_2521719_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521945_2522908_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523006_2523957_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524055_2525006_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525015_2525705_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525764_2526202_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526247_2527141_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527188_2528361_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528357_2529512_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2529708_2530059_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530048_2530483_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530499_2531450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531597_2532065_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532045_2533203_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533268_2534195_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534312_2535263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	2577541	2644040	4105292	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577541_2578492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578861_2579434_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579436_2580447_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580439_2580940_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580950_2581292_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581360_2582095_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582111_2582381_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582403_2583192_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583238_2584255_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584471_2585914_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586092_2587712_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587832_2589653_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589731_2591264_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591297_2592944_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593013_2594036_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594053_2595187_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595189_2595879_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595878_2596664_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596707_2597472_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597510_2598932_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2598997_2599702_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599749_2600169_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600181_2600589_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600772_2601483_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601609_2601900_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601917_2602400_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606905_2608060_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608365_2609382_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609628_2610417_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610483_2611164_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611160_2611931_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612028_2612979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613034_2613952_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2613962_2615141_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615160_2616156_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617744_2618353_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618340_2619381_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619398_2620361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620357_2621551_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621547_2622345_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622370_2623357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623375_2625415_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625616_2626297_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626310_2627222_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627218_2627797_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627935_2628841_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628848_2632268_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632255_2634856_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635811_2636444_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636837_2637596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637592_2638795_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2638982_2639933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640840_2641986_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2641972_2642728_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642844_2643024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643089_2644040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	2807645	2870089	4105292	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	55	NA	NA
WP_023853639.1|2807645_2808596_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808924_2809530_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809583_2810897_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2810971_2811442_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811441_2812230_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812240_2813893_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2813980_2814931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816092_2816599_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816595_2817360_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817375_2817660_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817724_2818714_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818885_2819815_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819786_2820473_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820506_2821052_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821096_2822362_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822358_2823261_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824442_2825387_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825481_2826999_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827040_2828669_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828776_2829658_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832770_2833145_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833169_2833508_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833551_2835186_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835224_2836571_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836678_2838100_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838169_2838754_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838856_2839807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839941_2841048_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841058_2842156_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842300_2843506_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843512_2844034_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844030_2844513_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844518_2844770_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844750_2845236_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845371_2848833_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848850_2849735_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849744_2850176_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850422_2850926_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851003_2852404_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852478_2853354_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853350_2854358_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854825_2855131_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855221_2855812_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856002_2857019_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857210_2859547_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859629_2860064_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2860162_2861113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861109_2861904_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861935_2862640_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862714_2863515_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863511_2863919_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863915_2864557_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864549_2866550_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867810_2869142_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869138_2870089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	2884565	2925924	4105292	transposase,protease	uncultured_Mediterranean_phage(40.0%)	31	NA	NA
WP_010930800.1|2884565_2885516_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885533_2885692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885846_2889668_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889824_2890493_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890497_2892171_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892189_2893509_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893513_2895829_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895884_2898053_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898049_2903230_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903328_2903643_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903870_2904116_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904210_2904729_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904828_2906034_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906149_2907547_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907663_2908242_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908314_2909706_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909873_2910824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911104_2911725_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911721_2912135_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912131_2913175_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913230_2913419_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913428_2914193_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914283_2914940_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915031_2915790_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915815_2917417_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917617_2918622_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918722_2918986_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919103_2919880_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920470_2921421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923804_2924917_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2924973_2925924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	2956310	3010541	4105292	transposase	Planktothrix_phage(16.67%)	50	NA	NA
WP_005012067.1|2956310_2957261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957278_2957428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957381_2958278_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960555_2962781_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962945_2964034_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2963990_2964644_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964691_2965489_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966020_2966971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967051_2968200_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968256_2969207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969305_2969611_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969639_2970074_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970075_2971320_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971316_2972027_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972041_2972953_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973315_2973720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973716_2974175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974181_2975090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975086_2975953_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975939_2976767_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976777_2977905_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2978982_2980221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980262_2981525_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981531_2982284_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982335_2982521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982796_2983261_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983292_2983952_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984096_2986205_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986201_2987152_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987255_2987876_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2987979_2988720_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989854_2990979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991024_2991393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991634_2992585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993620_2994163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994360_2994531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994548_2995499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995495_2996404_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996530_2997367_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997879_2998989_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999050_3000001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3000193_3000976_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3000989_3001754_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3001766_3003113_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3003138_3004068_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3004183_3005089_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3005106_3006306_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3006378_3007071_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3007119_3009546_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3009590_3010541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	3379945	3433686	4105292	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3379945_3380896_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381300_3381945_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3381969_3382554_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382654_3383272_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383274_3384990_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3384986_3385295_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385311_3385929_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3385973_3386276_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386376_3387231_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387418_3387643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387812_3388085_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388502_3388910_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389279_3390074_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390174_3391410_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391478_3392495_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392506_3393883_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393879_3395076_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395072_3396611_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396607_3397867_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399807_3400758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401524_3402619_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402611_3403946_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403899_3404583_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3404608_3405772_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3405768_3406770_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406769_3407642_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407638_3408388_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408384_3409176_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409172_3410312_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410587_3411373_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411406_3412189_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412192_3412582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3413721_3414585_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3414620_3415709_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415705_3416656_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417009_3419988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420914_3421793_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423741_3424692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424688_3425156_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425198_3425969_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3425989_3426790_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426800_3428210_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428304_3429090_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429329_3430346_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430453_3430846_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3430983_3431664_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431668_3432640_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432735_3433686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	3439841	3499139	4105292	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3439841_3441605_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441716_3442595_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442707_3443523_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443526_3443778_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443862_3444879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445209_3445431_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447791_3448709_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449206_3450415_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450494_3452066_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452183_3453119_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453307_3454252_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454819_3460537_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460542_3461670_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461725_3462352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3462623_3463640_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463735_3464446_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464442_3465432_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465527_3467159_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467161_3467899_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468054_3468927_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3469276_3470416_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470412_3471072_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471143_3471776_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471805_3472324_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472334_3473444_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473490_3474345_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474346_3475249_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476471_3477422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479176_3480166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3480341_3481130_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481126_3482158_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482176_3482740_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482795_3484316_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484579_3485284_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3485291_3486020_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486134_3486509_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486551_3487841_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487837_3489007_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489003_3489843_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489902_3490838_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490850_3491801_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491899_3492862_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492893_3493253_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493377_3494280_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494281_3496054_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496088_3496865_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498188_3499139_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	3514077	3572150	4105292	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514077_3515028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515156_3516290_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516333_3517239_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517241_3518942_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518938_3519859_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519866_3520844_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520902_3521937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3523911_3524148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3524274_3525138_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525226_3526048_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526127_3526865_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3526861_3527854_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3528006_3528630_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528674_3529823_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3532146_3533097_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533437_3534388_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534486_3535437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535733_3536231_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536273_3538049_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538056_3538923_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538929_3539664_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540833_3541628_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541917_3542508_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542541_3543870_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543944_3545090_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545201_3546200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546162_3546597_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548113_3548998_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3548994_3550200_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550196_3551057_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3551169_3552960_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3553000_3553645_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3553666_3553975_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554140_3555427_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3556860_3557811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559762_3560977_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561082_3562072_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562068_3562677_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562689_3563319_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563315_3563936_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3563967_3564759_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565610_3566066_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566084_3567011_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567064_3568351_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569281_3570154_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570150_3571101_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571199_3572150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP017927	Bordetella pertussis strain J295 chromosome, complete genome	4105292	4004360	4069272	4105292	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4004360_4004846_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4004934_4005072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005064_4006045_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006311_4007121_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007160_4007841_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007834_4008293_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008304_4008667_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008749_4009433_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009488_4009797_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009815_4010130_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010126_4012601_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012608_4014000_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4013996_4014182_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014160_4014862_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014858_4015680_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015660_4016785_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016777_4017797_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4018002_4018893_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019137_4019929_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020011_4020386_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020363_4021773_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021765_4023148_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023482_4025087_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4025164_4026136_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026146_4027073_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027463_4028414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028583_4029810_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030009_4030876_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030868_4031831_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031931_4032882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4032980_4033931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034029_4034980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4034976_4036470_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036466_4039574_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039570_4042639_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042635_4043886_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4044066_4044819_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4044860_4045505_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4045513_4046494_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046593_4047337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047419_4047767_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047864_4048707_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048751_4049639_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049665_4049854_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049951_4051409_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051395_4052922_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052940_4053408_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053407_4054430_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054550_4055291_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055345_4056446_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056447_4057638_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057757_4058774_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059092_4059764_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059760_4060669_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060880_4061528_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065388_4066456_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066466_4067276_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4067365_4068139_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068139_4068304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4068321_4069272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
