The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	27282	70036	4106384	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	77634	136108	4106384	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	164894	225405	4106384	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	233337	286925	4106384	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	390858	448367	4106384	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417529_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101638659.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.8e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	589372	650563	4106384	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589372_590323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590798_591689_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591685_592507_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592706_593198_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593216_594290_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594336_595440_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595515_596136_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596156_596666_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596720_596972_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597035_598169_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598176_598563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598559_601079_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601507_601846_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601842_602349_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602410_603211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603321_604263_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604356_605892_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607571_609422_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609425_610259_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610258_611200_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611451_612423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612564_614853_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615159_616068_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616122_617088_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617162_618824_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618895_619606_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619754_620705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621403_621787_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621844_622447_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622464_622866_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622981_623893_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623889_624471_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625265_626000_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626040_627090_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627237_627816_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628202_629180_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629273_633668_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633868_634717_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634875_635688_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635743_636694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636792_637593_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637654_638038_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638049_639402_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639689_640019_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640021_640771_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640953_641874_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641920_642133_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642155_642578_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642594_643695_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643791_645309_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645384_646224_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646245_647118_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647208_648303_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648596_649547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649621_650563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	655887	702078	4106384	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655887_656913_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656953_657193_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657262_658852_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658851_659400_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659480_660053_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660071_660983_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661056_662025_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662147_663221_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663225_665046_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665122_666073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666161_666497_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666630_667281_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667302_668721_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668790_669546_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669514_670273_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670283_671165_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671181_671889_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671891_672650_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672859_674602_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674594_675119_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675158_675953_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676120_677194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677292_678243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678494_678701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678772_679384_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679938_680190_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680182_680872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681128_682079_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682718_683204_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683190_684468_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684470_685889_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685917_686973_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686978_687221_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687343_687946_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688374_689325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689999_690251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690313_690796_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690809_690998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690997_691393_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691389_691788_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691784_692207_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692214_692715_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692969_693488_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693497_693827_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693844_694135_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694160_696773_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696782_697142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697209_697743_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697739_698129_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698121_702078_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	708244	762173	4106384	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708244_709975_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710027_710456_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710458_711139_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711138_711597_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711633_712608_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712624_713941_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713972_714470_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714556_715246_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715245_716295_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716291_717086_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717254_717605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717580_718138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719267_720218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722355_723585_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723587_725030_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725134_726280_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726311_727109_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727133_728693_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728689_731062_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731171_732275_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732274_732967_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733110_733812_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733796_734174_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734905_735856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736015_736888_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737228_737447_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737486_738866_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738907_740305_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740344_741997_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742000_742885_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742884_743826_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743904_745524_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745690_746506_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746573_747143_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747143_748094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748748_749846_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749879_751145_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751302_752253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752496_753087_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753102_755547_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755666_756638_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756769_757294_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757253_758204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758424_760620_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760692_761100_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761222_762173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	884762	952738	4106384	transposase	Bacillus_phage(33.33%)	55	NA	NA
WP_023994644.1|884762_885779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885975_886959_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888557_889946_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889976_890966_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891076_892309_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892590_893391_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893413_895645_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896432_896879_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896900_897647_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897790_898768_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899401_900013_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900006_901224_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901364_902315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902311_903031_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903151_905311_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905401_905671_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905759_905966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905964_906492_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906510_907290_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907457_908474_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908546_909038_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909048_910764_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911927_912878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912874_914707_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915105_915765_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916292_916973_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917254_917971_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_029444137.1|921431_924320_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924543_925896_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925924_926446_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926442_927897_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927931_928180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928285_929161_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929186_930242_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930254_931046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931078_932449_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933625_934576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934628_934850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935009_935222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935341_936460_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936556_936772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936965_937217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937329_938280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938276_938660_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938714_940529_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940678_941506_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941551_942532_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942528_942741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942737_943919_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944082_944817_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944818_947431_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947566_949480_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950095_950506_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950603_951689_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951787_952738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	996267	1068784	4106384	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996267_997218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997322_998372_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998509_999526_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001034_1001607_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001666_1002398_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002449_1003367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004174_1007354_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007350_1008733_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008802_1009054_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009199_1009814_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1010000_1012061_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012190_1013042_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_101638660.1|1013038_1013665_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013661_1015416_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015708_1018414_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018426_1020088_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020100_1021891_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022112_1023288_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023330_1024281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024379_1025120_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025314_1027351_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027368_1028379_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028496_1029690_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029719_1030493_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030489_1031680_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031705_1032644_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032640_1034989_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035143_1035785_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037114_1037267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037298_1037847_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037865_1038351_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038528_1039467_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039469_1039787_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039832_1040777_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042457_1043108_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043161_1043497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043493_1044354_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044370_1044652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044725_1044989_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_010929591.1|1045232_1046183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046481_1047219_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047654_1047978_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048012_1048573_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048693_1049569_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049581_1050529_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050630_1050924_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050950_1053008_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053022_1053523_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053596_1055303_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056166_1057219_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057271_1057661_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057669_1058302_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058401_1059418_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060248_1061256_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061252_1062896_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062892_1063780_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063920_1064394_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064383_1065406_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065402_1066830_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067767_1068784_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	1072537	1134613	4106384	transposase,holin,tRNA	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1072537_1073674_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073670_1074744_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074901_1076338_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076428_1077070_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077405_1078422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080464_1081415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082617_1084039_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084302_1085019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085103_1085421_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085461_1085875_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085876_1086236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086278_1087823_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087906_1088737_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088771_1089926_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089968_1090841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090957_1093246_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094452_1094917_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094943_1095894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095911_1096049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096261_1097038_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097082_1097940_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097961_1098978_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099112_1100153_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100347_1102429_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102664_1104158_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104388_1105183_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105403_1106762_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106758_1107601_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107619_1109506_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109447_1109699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109743_1110376_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110394_1110997_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111148_1112099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112679_1113387_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113745_1114732_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114871_1115885_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115881_1116832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116944_1117403_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117439_1118753_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118770_1119142_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119138_1120602_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120742_1121471_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121452_1124302_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124514_1125465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125632_1126457_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126456_1127335_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128239_1129355_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129383_1130178_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130174_1132040_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132118_1132751_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132747_1133050_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133092_1134613_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	1152183	1218703	4106384	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152183_1153980_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153979_1154948_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155017_1155863_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155930_1156485_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156531_1157482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157580_1158213_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158378_1160661_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160815_1163512_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163637_1164126_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166536_1169407_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169452_1170667_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170896_1172324_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172421_1173513_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173525_1174284_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174371_1175274_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175270_1176221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176350_1177334_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177388_1178111_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179589_1180945_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181025_1183401_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183565_1185641_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185702_1186497_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186604_1187567_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187554_1188310_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188417_1190055_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190122_1190860_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190962_1191538_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191710_1192247_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192279_1192594_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192609_1193455_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193493_1194873_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194950_1195832_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195930_1196881_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196877_1197288_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197395_1198250_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198242_1199205_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199250_1200375_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200480_1201359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201483_1202263_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202416_1203838_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204272_1205970_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206196_1207138_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207464_1208211_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208218_1209145_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209266_1210184_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210223_1211177_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211201_1211780_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213453_1214062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214139_1214493_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214576_1215566_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215768_1216719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216805_1217756_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217752_1218703_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	1269631	1337396	4106384	transposase,tRNA	Salmonella_phage(22.22%)	59	NA	NA
WP_010931070.1|1269631_1270582_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274328_1274940_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275162_1276623_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276719_1278312_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278665_1278923_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278924_1280265_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280360_1281050_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281062_1282493_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284217_1285039_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285049_1286621_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286649_1287627_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287653_1288457_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288453_1289248_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289255_1290491_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290504_1290918_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_162291062.1|1291273_1291546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931031.1|1293238_1294966_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295077_1296436_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296728_1297679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297719_1298790_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298812_1299691_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299862_1300834_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300996_1301839_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302000_1302681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302674_1303844_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303840_1304872_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304939_1306157_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306191_1307724_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307804_1308428_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308458_1309070_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309105_1309576_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310007_1311012_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311048_1312563_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312566_1313526_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313554_1314358_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314359_1315994_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316077_1317139_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317337_1317607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317610_1318135_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318550_1319501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319497_1320532_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320640_1321279_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321573_1321801_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321923_1322637_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322881_1323832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323971_1324217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324331_1325780_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325890_1326841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1326837_1327287_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_003812834.1|1328766_1328964_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1328979_1329339_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1329413_1330436_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1330448_1332866_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1332883_1333213_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1333271_1333682_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1334181_1335273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1335456_1336053_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1336152_1336335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1336445_1337396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	1417073	1470253	4106384	transposase,tRNA	Salmonella_phage(22.22%)	45	NA	NA
WP_005013747.1|1417073_1418024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418190_1418544_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418556_1418919_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418960_1419386_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419588_1420845_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421043_1422024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422173_1423415_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423513_1424464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424472_1425168_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427989_1428589_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428599_1430765_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430788_1432573_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432572_1432662_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433356_1433629_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433628_1435695_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435691_1436642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1436757_1437090_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1437086_1437773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1437759_1438719_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1438751_1441121_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1441120_1441753_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1441854_1443195_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1443241_1444597_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1444887_1445124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1445311_1445629_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1445901_1446417_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1446687_1447443_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1447781_1447988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1447995_1448655_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1448949_1451154_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1451264_1452488_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1452610_1453585_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1453652_1454846_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1454860_1455661_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1455657_1457514_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1457510_1458116_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1458134_1459520_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1460245_1461472_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1461560_1462343_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1462441_1463392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1463418_1464192_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1464203_1465445_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1467226_1468177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1468208_1469306_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1469302_1470253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	1512102	1580188	4106384	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1512102_1512591_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1512708_1513287_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1513392_1513761_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1513859_1514810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1514816_1515929_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1516615_1517818_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1518021_1520682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1520694_1524099_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1524766_1526992_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1527038_1527365_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1527415_1528024_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1528122_1529073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1529142_1529907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1529903_1530440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1530606_1531458_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1531517_1532144_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1532140_1533091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1533189_1534302_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1534291_1535293_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1535398_1536910_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1536906_1538211_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1538322_1538883_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1539150_1539705_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1540160_1540376_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1540630_1543228_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1543224_1544412_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1545070_1545685_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1545773_1546895_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1546912_1547818_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1548710_1549661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1549842_1550595_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1550663_1551323_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1551319_1552048_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1552060_1554340_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1554364_1554568_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1554609_1555242_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1555377_1556295_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1556291_1557005_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1557242_1558013_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1558017_1558617_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1558861_1560352_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1560410_1560695_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1561260_1562187_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1562323_1563064_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1563230_1564607_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1564788_1565694_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1567345_1569148_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1569265_1569916_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1570014_1570965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1570986_1572207_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1572392_1573805_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1573868_1574936_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1574935_1576423_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1576432_1577377_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1577536_1578235_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1578312_1579218_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1579237_1580188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	1616137	1671728	4106384	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1616137_1617088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1617146_1617920_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1617912_1619469_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1619465_1620416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1621742_1622345_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1622584_1623286_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1623279_1624062_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1624246_1625197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1625295_1626033_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1626222_1626981_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1627027_1628017_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1628194_1629163_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1630702_1631671_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1631679_1632621_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1633094_1634105_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1634095_1635610_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1635606_1636953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1636955_1637990_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1638039_1639665_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1640217_1641168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1641272_1642220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1642273_1644088_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1644080_1644755_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1644884_1647959_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1647972_1648272_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1648586_1649210_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1649453_1650323_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1650300_1651245_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1651330_1652257_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1652369_1653149_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1653139_1654336_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1654366_1655317_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1655538_1656228_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1656292_1657048_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1657099_1658092_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1658101_1659055_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1659170_1660133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1661534_1661963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1661959_1662910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1663203_1663926_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1664364_1665552_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1665555_1665906_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1667655_1668627_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1668640_1669354_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1669358_1670276_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1670382_1670679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1670777_1671728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	1829495	1888765	4106384	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1829495_1830446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1830570_1831380_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1831580_1832531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1833804_1835022_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1836078_1836981_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1837057_1837930_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1838060_1838429_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1838486_1839533_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1839728_1840985_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1840989_1842327_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1842476_1843433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1843535_1844468_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1844583_1844904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1844896_1845256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1845303_1846878_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1846930_1847875_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1847892_1848723_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1848715_1850350_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1850346_1851702_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1852608_1854186_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1854189_1855464_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1855561_1855936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1857651_1858785_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1858822_1859428_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1859424_1860243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1860314_1862939_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1862925_1863180_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1863246_1863828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1864131_1864392_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1864557_1865181_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1865180_1865954_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1865950_1867159_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1867184_1867658_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1867731_1868682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1868780_1869731_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1869829_1871179_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1871944_1872700_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1872792_1875675_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1875997_1876423_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1876450_1877599_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1877595_1878102_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1878117_1879404_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1879453_1880749_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1880750_1881389_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1881394_1882552_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1882578_1883934_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1883937_1885008_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1885146_1885383_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1885470_1886577_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1886542_1887847_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1887865_1888765_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	1899005	1943328	4106384	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1899005_1899956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1900054_1901005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1901204_1902290_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1902305_1903067_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1903063_1903987_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1904085_1904610_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1904618_1905362_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1905457_1905697_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1905710_1905863_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1905948_1907439_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1907530_1908469_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1908465_1908642_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1908644_1909307_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1910928_1911072_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1911068_1912043_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1912209_1913160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1913156_1914431_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1914534_1915728_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1915724_1916378_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1916374_1917811_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1917798_1918158_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1918972_1919113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1919130_1920081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1921126_1922992_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1923249_1924770_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1924857_1925508_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1926456_1927752_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1927773_1928658_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1928756_1929632_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1929621_1929978_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1930108_1931083_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1931212_1931392_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1931489_1932014_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1932024_1932861_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1932973_1933345_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1933341_1933893_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1933908_1935600_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1935648_1936329_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1936576_1937041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1937210_1938140_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1938152_1938800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1938873_1940691_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1940774_1941725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1942377_1943328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	1973101	2037470	4106384	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1973101_1974052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1974273_1975224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1975322_1976288_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1976425_1977325_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1979919_1981407_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1981417_1982614_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1982686_1984006_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1984002_1984878_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1984908_1986057_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1986074_1986389_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1986410_1987133_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1987132_1987951_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1987955_1988483_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1988488_1989745_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1990103_1991243_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1991320_1992193_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1993063_1994014_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1993973_1994609_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1994968_1996291_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1996609_1997431_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1998855_1999428_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|1999467_2001297_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2001259_2002318_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2002355_2002817_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2002901_2003648_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2005138_2008369_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2008435_2009767_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2010019_2010394_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2010496_2011675_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2011685_2012276_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2012386_2013193_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2013218_2014013_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2015013_2015988_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2016146_2016659_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2016815_2017787_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2019531_2020338_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2020334_2021636_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2021586_2022351_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2022464_2023235_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2023319_2024507_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2024579_2024954_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2025054_2026317_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2026313_2027171_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2027343_2028345_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2028796_2029747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2031310_2032462_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2032830_2033067_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2033130_2033298_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2033411_2035307_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2035470_2036421_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2036519_2037470_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	2168999	2218652	4106384	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2168999_2169950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2170048_2172043_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2172102_2173068_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2173057_2175919_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2175921_2176428_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2176532_2177741_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2177742_2178681_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2178842_2179316_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2179312_2180263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2180373_2180814_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2180942_2182172_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2182210_2183032_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2183085_2184237_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2184328_2184817_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2187367_2189917_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2189987_2192561_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2192826_2193027_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2193058_2193220_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2193277_2193616_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2193764_2194715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2195489_2196158_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2196139_2198095_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2198337_2199087_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2199099_2199963_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2199966_2201382_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2201515_2202244_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2202382_2202583_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2202758_2203157_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2203180_2204581_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2204699_2205452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2205740_2206418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2206444_2207224_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2207220_2208105_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2208122_2208902_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2208886_2209645_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2209782_2210418_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2210685_2211702_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2211799_2212840_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2212974_2214267_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2215626_2216010_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2216027_2216615_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2216652_2217603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2217701_2218652_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	2474959	2533203	4106384	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2474959_2475910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2476389_2477046_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2477060_2478728_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2478730_2479360_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2479571_2480666_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2480810_2481623_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2481626_2483210_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2483380_2484511_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2484697_2485774_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2485855_2486506_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2486520_2487924_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2488207_2489026_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2489022_2489727_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2490626_2491742_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2491775_2492150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2492172_2493330_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2493342_2493576_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2494210_2497180_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2497194_2497404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2497555_2498185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2498181_2500239_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2500295_2500976_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2500972_2501533_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2501539_2502637_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2502789_2503383_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2503379_2504672_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2504685_2505228_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2505237_2506074_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2506107_2507169_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2507210_2508263_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2508278_2508581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2508722_2509673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2509851_2511546_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2511542_2512628_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2512675_2513575_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2513585_2514230_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2515251_2518494_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2518504_2519659_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2519885_2520848_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2520946_2521897_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2521995_2522946_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2522955_2523645_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2523704_2524142_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2524187_2525081_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2525128_2526301_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2526297_2527452_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2527648_2527999_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2527988_2528423_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2528439_2529390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2529537_2530005_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2529985_2531143_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2531208_2532135_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2532252_2533203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	2575481	2641981	4106384	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575481_2576432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576801_2577374_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577376_2578387_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578379_2578880_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578890_2579232_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2579300_2580035_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580051_2580321_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580343_2581132_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581178_2582195_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582411_2583854_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584032_2585652_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585772_2587593_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587671_2589204_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2589237_2590884_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590953_2591976_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591993_2593127_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593129_2593819_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593818_2594604_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594647_2595412_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595450_2596872_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596937_2597642_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597689_2598109_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598121_2598529_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598712_2599423_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599549_2599840_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599857_2600340_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604845_2606000_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606305_2607322_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607568_2608357_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608423_2609104_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609100_2609871_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609969_2610920_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610975_2611893_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611903_2613082_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613101_2614097_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615685_2616294_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616281_2617322_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617339_2618302_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618298_2619492_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619488_2620286_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620311_2621298_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621316_2623356_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2623557_2624238_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624251_2625163_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625159_2625738_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625876_2626782_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626789_2630209_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630196_2632797_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633752_2634385_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634778_2635537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2635533_2636736_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636923_2637874_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638781_2639927_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639913_2640669_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640785_2640965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641030_2641981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	2670096	2707508	4106384	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670096_2671047_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671145_2672096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672188_2672728_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672834_2673179_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673236_2674685_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674872_2675208_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676835_2678014_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678096_2678597_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678706_2679408_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2679419_2679884_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679898_2680174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680170_2680947_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680975_2681803_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681928_2682399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682525_2683419_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683466_2684648_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684660_2685476_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2685609_2686137_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686133_2686631_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686778_2687156_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687377_2688328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688426_2689038_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689272_2690400_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690510_2691599_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691651_2692503_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692522_2693404_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693580_2694894_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695104_2695938_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695934_2696516_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696869_2697820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697835_2698951_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699053_2699980_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699979_2701218_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701214_2701982_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701982_2702684_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702765_2703212_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2704101_2704740_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705508_2706459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706557_2707508_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	2806635	2861152	4106384	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2806635_2807586_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807914_2808520_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808573_2809887_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809961_2810432_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810431_2811220_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811230_2812883_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812970_2813921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815082_2815589_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815585_2816350_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816365_2816650_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816714_2817704_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817875_2818805_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818776_2819463_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819496_2820042_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820086_2821352_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821348_2822251_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823432_2824377_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824471_2825989_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826030_2827659_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827766_2828648_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831760_2832135_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832159_2832498_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832541_2834176_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834214_2835561_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835668_2837090_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837159_2837744_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837846_2838797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838931_2840038_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840048_2841146_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841290_2842496_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842502_2843024_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843020_2843503_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843508_2843760_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843740_2844226_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844361_2847823_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847840_2848725_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848734_2849166_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849412_2849916_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849993_2851394_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851468_2852344_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852340_2853348_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853815_2854121_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854211_2854802_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854992_2856009_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856200_2858537_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858619_2859054_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859152_2860103_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860201_2861152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	2869177	2925962	4106384	transposase,protease	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2869177_2870128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871834_2872101_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872808_2873147_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877699_2878302_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878398_2879688_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879745_2880477_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880473_2881277_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881273_2882362_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882358_2883288_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883436_2884582_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884603_2885554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885884_2889706_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889862_2890531_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890535_2892209_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892227_2893547_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893551_2895867_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895922_2898091_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898087_2903268_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903366_2903681_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903908_2904154_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904248_2904767_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904866_2906072_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906187_2907585_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907701_2908280_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908352_2909744_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909911_2910862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911142_2911763_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911759_2912173_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912169_2913213_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913268_2913457_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913466_2914231_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914321_2914978_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915069_2915828_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915853_2917455_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917655_2918660_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918760_2919024_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919141_2919918_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920508_2921459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923842_2924955_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925011_2925962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	2956348	3000039	4106384	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2956348_2957299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957419_2958316_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960593_2962819_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962983_2964072_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964028_2964682_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964729_2965527_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966058_2967009_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967089_2968238_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968294_2969245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969343_2969649_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969677_2970112_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970113_2971358_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971354_2972065_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972079_2972991_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973353_2973758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973754_2974213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974219_2975128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975124_2975991_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975977_2976805_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976815_2977943_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979020_2980259_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980300_2981563_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981569_2982322_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982373_2982559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982834_2983299_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983330_2983990_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984134_2986243_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986239_2987190_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987293_2987914_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988017_2988758_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989892_2991017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991062_2991431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991672_2992623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993658_2994201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994398_2994569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994586_2995537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995533_2996442_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996568_2997405_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997917_2999027_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999088_3000039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	3379987	3433727	4106384	transposase	Staphylococcus_phage(33.33%)	47	NA	NA
WP_023995489.1|3379987_3380938_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381342_3381987_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382011_3382596_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382696_3383314_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383316_3385032_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385028_3385337_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385353_3385971_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386015_3386318_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386418_3387273_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387460_3387685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387854_3388127_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388544_3388952_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389321_3390116_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390216_3391452_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391520_3392537_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392548_3393925_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393921_3395118_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395114_3396653_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396649_3397909_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_010929591.1|3399849_3400800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401566_3402661_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402653_3403988_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403941_3404625_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3404650_3405814_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3405810_3406812_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406811_3407684_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407680_3408430_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408426_3409218_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409214_3410354_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410629_3411415_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411448_3412231_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412234_3412624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3413763_3414627_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3414662_3415751_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415747_3416698_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|3420955_3421834_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423782_3424733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424729_3425197_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425239_3426010_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3426030_3426831_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426841_3428251_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428345_3429131_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429370_3430387_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430494_3430887_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431024_3431705_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431709_3432681_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432776_3433727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	3439882	3499180	4106384	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3439882_3441646_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441757_3442636_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442748_3443564_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443567_3443819_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443903_3444920_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445250_3445472_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447832_3448750_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449247_3450456_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450535_3452107_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452224_3453160_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453348_3454293_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454860_3460578_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460583_3461711_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461766_3462393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3462664_3463681_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463776_3464487_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464483_3465473_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465568_3467200_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467202_3467940_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468095_3468968_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3469317_3470457_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470453_3471113_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471184_3471817_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471846_3472365_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472375_3473485_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473531_3474386_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474387_3475290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476512_3477463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479217_3480207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3480382_3481171_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481167_3482199_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482217_3482781_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482836_3484357_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484620_3485325_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3485332_3486061_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486175_3486550_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486592_3487882_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487878_3489048_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489044_3489884_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489943_3490879_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490891_3491842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491940_3492903_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492934_3493294_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493418_3494321_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494322_3496095_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496129_3496906_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498229_3499180_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	3514118	3572191	4106384	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514118_3515069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515197_3516331_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516374_3517280_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517282_3518983_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518979_3519900_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519907_3520885_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520943_3521978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3523952_3524189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3524315_3525179_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525267_3526089_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526168_3526906_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3526902_3527895_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3528047_3528671_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528715_3529864_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3532187_3533138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533478_3534429_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534527_3535478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535774_3536272_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536314_3538090_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538097_3538964_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538970_3539705_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540874_3541669_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541958_3542549_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542582_3543911_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543985_3545131_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545242_3546241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546203_3546638_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548154_3549039_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549035_3550241_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550237_3551098_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3551210_3553001_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3553041_3553686_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3553707_3554016_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554181_3555468_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3556901_3557852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559803_3561018_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561123_3562113_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562109_3562718_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562730_3563360_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563356_3563977_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564008_3564800_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565651_3566107_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566125_3567052_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567105_3568392_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569322_3570195_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570191_3571142_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571240_3572191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP017926	Bordetella pertussis strain J230 chromosome, complete genome	4106384	4005452	4070364	4106384	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005452_4005938_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006026_4006164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006156_4007137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007403_4008213_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008252_4008933_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008926_4009385_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009396_4009759_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009841_4010525_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010580_4010889_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010907_4011222_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011218_4013693_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013700_4015092_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015088_4015274_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015252_4015954_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015950_4016772_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016752_4017877_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017869_4018889_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019094_4019985_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020229_4021021_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021103_4021478_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021455_4022865_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022857_4024240_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024574_4026179_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026256_4027228_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027238_4028165_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028555_4029506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029675_4030902_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031101_4031968_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031960_4032923_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033023_4033974_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931661.1|4034072_4035023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035121_4036072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036068_4037562_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037558_4040666_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040662_4043731_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043727_4044978_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045158_4045911_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045952_4046597_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046605_4047586_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047685_4048429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048511_4048859_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048956_4049799_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049843_4050731_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050757_4050946_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051043_4052501_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052487_4054014_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054032_4054500_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054499_4055522_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055642_4056383_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056437_4057538_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057539_4058730_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058849_4059866_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060184_4060856_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060852_4061761_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061972_4062620_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066480_4067548_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067558_4068368_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068457_4069231_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069413_4070364_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
