The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	27282	70036	4104273	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162299926.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	77634	136108	4104273	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	164895	225405	4104273	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164895_165846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167289_168192_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168169_168799_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169081_170512_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170545_171175_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171223_172831_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172855_173539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173620_174097_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174303_175254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176369_176897_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176988_177804_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177864_178599_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178636_180715_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180964_181237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181338_182424_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182427_184332_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184328_188003_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188063_188627_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188634_189057_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189084_189504_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189532_189979_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190105_190603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190757_193028_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193103_194309_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	233337	286925	4104273	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	390858	448367	4104273	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417526_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_077069130.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	589371	650562	4104273	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590797_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592705_593197_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593215_594289_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594335_595439_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595514_596135_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596155_596665_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596719_596971_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597034_598168_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598175_598562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598558_601078_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601506_601845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601841_602348_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602409_603210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603320_604262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604355_605891_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_077069131.1|607570_609421_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609424_610258_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610257_611199_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611450_612422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612563_614852_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615158_616067_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616121_617087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617161_618823_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618894_619605_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619753_620704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621402_621786_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621843_622446_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622463_622865_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622980_623892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623888_624470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625264_625999_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626039_627089_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627236_627815_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628201_629179_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629272_633667_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633867_634716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634874_635687_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635742_636693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636791_637592_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637653_638037_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638048_639401_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639688_640018_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640020_640770_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640952_641873_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641919_642132_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642154_642577_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642593_643694_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643790_645308_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645383_646223_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646244_647117_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647207_648302_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648595_649546_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649620_650562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	655886	702077	4104273	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655886_656912_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656952_657192_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657261_658851_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658850_659399_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659479_660052_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660070_660982_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661055_662024_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662146_663220_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663224_665045_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665121_666072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666160_666496_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666629_667280_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667301_668720_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668789_669545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669513_670272_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670282_671164_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671180_671888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671890_672649_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672858_674601_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674593_675118_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675157_675952_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676119_677193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677291_678242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678493_678700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678771_679383_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679937_680189_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680181_680871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681127_682078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682717_683203_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683189_684467_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684469_685888_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685916_686972_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686977_687220_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687342_687945_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688373_689324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689998_690250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690312_690795_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690808_690997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690996_691392_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691388_691787_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691783_692206_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692213_692714_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692968_693487_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693496_693826_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693843_694134_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694159_696772_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696781_697141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697208_697742_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697738_698128_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698120_702077_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	708243	762172	4104273	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708243_709974_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710026_710455_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710457_711138_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711137_711596_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711632_712607_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712623_713940_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713971_714469_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714555_715245_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715244_716294_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716290_717085_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717253_717604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717579_718137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719266_720217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722354_723584_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723586_725029_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725133_726279_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726310_727108_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727132_728692_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728688_731061_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731170_732274_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732273_732966_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733109_733811_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733795_734173_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734904_735855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736014_736887_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737227_737446_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737485_738865_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738906_740304_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740343_741996_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741999_742884_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742883_743825_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743903_745523_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745689_746505_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746572_747142_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747142_748093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748747_749845_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749878_751144_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751301_752252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752495_753086_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753101_755546_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755665_756637_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756768_757293_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757252_758203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_094145978.1|758424_760623_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760691_761099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761221_762172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	853050	913926	4104273	transposase	Vibrio_phage(25.0%)	51	NA	NA
WP_010929591.1|853050_854001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854018_854573_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854574_855009_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855005_855440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855423_856227_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856243_857059_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|857055_857871_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858017_858719_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858746_860705_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860787_861738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861958_862627_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862750_863857_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863869_866983_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866979_868473_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868487_869159_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869202_869697_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869837_870485_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870588_872637_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872633_874646_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874671_876006_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876114_877107_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877173_879258_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879282_880254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880382_881414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|881417_882569_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882739_883663_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883740_884565_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884761_885778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885974_886958_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888556_889945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889975_890965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891075_892308_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892589_893390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893412_895644_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901363_902314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902310_903030_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903150_905310_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905400_905670_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905758_905965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905963_906491_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906509_907289_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907456_908473_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908545_909037_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909047_910763_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911926_912877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	934673	998266	4104273	transposase	Bacillus_virus(15.38%)	58	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937604_937820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953782_954757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954881_955793_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956069_956462_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956591_957542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957571_957754_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958526_959708_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959923_960601_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960597_961323_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961448_962030_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962400_965082_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|965084_966215_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|966207_967293_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967379_968279_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968275_969604_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969618_970290_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970477_972193_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972194_972554_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972745_973060_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973102_974323_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974319_975261_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975257_976247_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976281_976866_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976964_977915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977995_978907_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978967_980113_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980132_981047_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981118_981868_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981867_982797_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983040_984867_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984949_985591_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|985780_986815_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988651_989716_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990513_991422_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992909_994184_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994337_994718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994725_995598_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995903_996284_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996494_997220_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997315_998266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1024378	1082463	4104273	tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1024378_1025329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025427_1026168_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026362_1028399_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028416_1029427_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029544_1030738_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030767_1031541_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031537_1032728_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032753_1033692_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033688_1036037_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036191_1036833_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038162_1038315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038346_1038895_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038913_1039399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039576_1040515_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040517_1040835_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040880_1041825_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043505_1044156_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044209_1044545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044541_1045402_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045418_1045700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045773_1046037_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046280_1047231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047529_1048267_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048702_1049026_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049060_1049621_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049741_1050617_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050629_1051577_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051678_1051972_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051998_1054056_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054070_1054571_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054644_1056351_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057214_1058267_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058319_1058709_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058717_1059350_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059449_1060466_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061296_1062304_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062300_1063944_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063940_1064828_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064968_1065442_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065431_1066454_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066450_1067878_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068815_1069832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070164_1071100_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071149_1073030_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073096_1073441_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073585_1074722_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074718_1075792_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075949_1077386_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077476_1078118_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078453_1079470_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081512_1082463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1086509	1158529	4104273	holin,tRNA,transposase	Planktothrix_phage(18.18%)	56	NA	NA
WP_003819794.1|1086509_1086923_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086924_1087284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087326_1088871_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088954_1089785_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089819_1090974_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091016_1091889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092005_1094294_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095500_1095965_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095991_1096942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096959_1097097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097309_1098086_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098130_1098988_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099009_1100026_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100160_1101201_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101395_1103477_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103712_1105206_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105436_1106231_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106451_1107810_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107806_1108649_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108667_1110554_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110495_1110747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110791_1111424_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111442_1112045_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112196_1113147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113727_1114435_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114793_1115780_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115919_1116933_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116929_1117880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117992_1118451_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118487_1119801_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119818_1120190_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120186_1121650_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121790_1122519_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122500_1125350_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930184.1|1126679_1127504_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127503_1128382_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129286_1130402_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130430_1131225_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131221_1133087_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133165_1133798_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133794_1134097_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134139_1135660_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1135666_1136422_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136451_1137556_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137658_1139359_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139340_1140318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140327_1141608_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141600_1142296_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142329_1143157_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143438_1146669_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1147404_1151331_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153230_1155027_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155026_1155995_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156064_1156910_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156977_1157532_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157578_1158529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1176316	1242310	4104273	tRNA,transposase	Bacillus_phage(25.0%)	51	NA	NA
WP_005012067.1|1176316_1177267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177396_1178380_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178434_1179157_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180635_1181991_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182071_1184447_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184611_1186687_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186748_1187543_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187650_1188613_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188600_1189356_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189463_1191101_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191168_1191906_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192008_1192584_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192756_1193293_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193325_1193640_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193655_1194501_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194539_1195919_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195996_1196878_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196976_1197927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197923_1198334_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198441_1199296_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199288_1200251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200296_1201421_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201526_1202405_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202529_1203309_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203462_1204884_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205318_1207016_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207242_1208184_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208510_1209257_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209264_1210191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210312_1211230_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211269_1212223_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212247_1212826_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214499_1215108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215185_1215539_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215622_1216612_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216814_1217765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217851_1218802_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218798_1219749_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1220009_1221038_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221117_1222416_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1222412_1222994_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1223306_1227353_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227593_1235255_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235251_1236202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1237341_1237815_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1237954_1238575_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1238710_1239511_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1239565_1240657_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1240678_1241122_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1241150_1241783_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1241893_1242310_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 14
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1292712	1329477	4104273	transposase	Salmonella_phage(50.0%)	36	NA	NA
WP_005013747.1|1292712_1293663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294284_1296012_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296123_1297482_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1297774_1298725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298765_1299836_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299858_1300737_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300908_1301880_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302042_1302885_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303046_1303727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303720_1304890_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304886_1305918_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305985_1307203_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307237_1308770_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308850_1309474_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309504_1310116_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310151_1310622_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033456131.1|1310811_1311045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1311052_1312057_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312093_1313608_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313611_1314571_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314599_1315403_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315404_1317039_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317122_1318184_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318382_1318652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318655_1319180_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_041337087.1|1319595_1320546_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320542_1321577_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321685_1322324_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322618_1322846_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322968_1323682_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323926_1324877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325016_1325262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325376_1326825_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326935_1327886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1327882_1328332_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1328526_1329477_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1418119	1470272	4104273	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1418119_1419070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419236_1419590_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419602_1419965_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420006_1420432_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420634_1421891_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422089_1423070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423219_1424461_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424559_1425510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425518_1426214_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429035_1429635_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429645_1431811_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431834_1433619_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433618_1433708_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434402_1434675_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434674_1436741_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436737_1437688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437786_1438737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438852_1439185_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439181_1439868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439854_1440814_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440846_1443216_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443215_1443848_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443949_1445290_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445336_1446692_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446982_1447219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447406_1447724_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447996_1448512_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448782_1449538_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449876_1450083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450090_1450750_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451044_1453249_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453359_1454583_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454705_1455680_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455747_1456941_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456955_1457756_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457752_1459609_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459605_1460211_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460229_1461615_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462340_1463567_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463655_1464438_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464536_1465487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465513_1466287_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466298_1467540_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469321_1470272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1514197	1582282	4104273	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514197_1514686_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514803_1515382_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515487_1515856_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515954_1516905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516911_1518024_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518710_1519913_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520116_1522777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522789_1526194_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526861_1529087_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529133_1529460_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529510_1530119_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530217_1531168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531237_1532002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1531998_1532535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532701_1533553_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533612_1534239_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534235_1535186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535284_1536397_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536386_1537388_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537493_1539005_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539001_1540306_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540417_1540978_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541245_1541800_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542255_1542471_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542725_1545323_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545319_1546507_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547164_1547779_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547867_1548989_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549006_1549912_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550804_1551755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551936_1552689_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552757_1553417_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553413_1554142_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554154_1556434_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556458_1556662_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556703_1557336_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557471_1558389_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558385_1559099_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559336_1560107_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560111_1560711_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560955_1562446_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562504_1562789_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563354_1564281_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564417_1565158_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565324_1566701_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566882_1567788_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569439_1571242_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571359_1572010_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572108_1573059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573080_1574301_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574486_1575899_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575962_1577030_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577029_1578517_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578526_1579471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579630_1580329_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580406_1581312_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581331_1582282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1618231	1682068	4104273	transposase	Brazilian_cedratvirus(25.0%)	53	NA	NA
WP_005013747.1|1618231_1619182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619240_1620014_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620006_1621563_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621559_1622510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623836_1624439_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624678_1625380_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625373_1626156_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626340_1627291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627389_1628127_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628316_1629075_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629121_1630111_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630288_1631257_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632796_1633765_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633773_1634715_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635188_1636199_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636189_1637704_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637700_1639047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639049_1640084_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640133_1641759_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642311_1643262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643366_1644314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644367_1646182_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646174_1646849_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646978_1650053_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650066_1650366_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650680_1651304_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651547_1652417_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652394_1653339_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653424_1654351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654463_1655243_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655233_1656430_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656460_1657411_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657632_1658322_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658386_1659142_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659193_1660186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660195_1661149_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661264_1662227_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663628_1664057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664053_1665004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665297_1666020_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666458_1667646_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667649_1668000_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077069133.1|1669749_1670721_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670734_1671448_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671452_1672370_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672476_1672773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930509.1|1674979_1677913_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1677912_1678257_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1678253_1679882_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1679878_1680358_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_033446177.1|1680357_1680639_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1680635_1680962_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1681117_1682068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1831588	1890858	4104273	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831588_1832539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832663_1833473_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833673_1834624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835897_1837115_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838171_1839074_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839150_1840023_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840153_1840522_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840579_1841626_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841821_1843078_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843082_1844420_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844569_1845526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845628_1846561_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846676_1846997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846989_1847349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847396_1848971_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849023_1849968_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849985_1850816_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850808_1852443_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852439_1853795_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854701_1856279_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856282_1857557_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857654_1858029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859744_1860878_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860915_1861521_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861517_1862336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862407_1865032_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865018_1865273_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865339_1865921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866224_1866485_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866650_1867274_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867273_1868047_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868043_1869252_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869277_1869751_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869824_1870775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870873_1871824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871922_1873272_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874037_1874793_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874885_1877768_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878090_1878516_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878543_1879692_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879688_1880195_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880210_1881497_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881546_1882842_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882843_1883482_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883487_1884645_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884671_1886027_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886030_1887101_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887239_1887476_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887563_1888670_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888635_1889940_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889958_1890858_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1901098	1945421	4104273	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1901098_1902049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902147_1903098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903297_1904383_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904398_1905160_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905156_1906080_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906178_1906703_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906711_1907455_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907550_1907790_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907803_1907956_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908041_1909532_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909623_1910562_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910558_1910735_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910737_1911400_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913021_1913165_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913161_1914136_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914302_1915253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915249_1916524_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916627_1917821_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917817_1918471_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918467_1919904_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919891_1920251_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921065_1921206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921223_1922174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923219_1925085_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925342_1926863_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926950_1927601_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928549_1929845_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929866_1930751_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930849_1931725_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931714_1932071_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932201_1933176_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933305_1933485_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933582_1934107_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934117_1934954_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935066_1935438_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935434_1935986_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936001_1937693_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937741_1938422_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938669_1939134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939303_1940233_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940245_1940893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940966_1942784_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942867_1943818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944470_1945421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	1975194	2039563	4104273	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975194_1976145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976366_1977317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977415_1978381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978518_1979418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982012_1983500_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983510_1984707_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984779_1986099_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986095_1986971_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987001_1988150_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988167_1988482_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988503_1989226_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989225_1990044_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990048_1990576_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990581_1991838_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992196_1993336_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993413_1994286_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995156_1996107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996066_1996702_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997061_1998384_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998702_1999524_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000948_2001521_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001560_2003390_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003352_2004411_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004448_2004910_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004994_2005741_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007231_2010462_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010528_2011860_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012112_2012487_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012589_2013768_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013778_2014369_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014479_2015286_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015311_2016106_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017106_2018081_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018239_2018752_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018908_2019880_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021624_2022431_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022427_2023729_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023679_2024444_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024557_2025328_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025412_2026600_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026672_2027047_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027147_2028410_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028406_2029264_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029436_2030438_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030889_2031840_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033403_2034555_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034923_2035160_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035223_2035391_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035504_2037400_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037563_2038514_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038612_2039563_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	2171091	2228369	4104273	tRNA,transposase	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2171091_2172042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172140_2174135_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174194_2175160_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175149_2178011_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178013_2178520_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178624_2179833_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179834_2180773_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180934_2181408_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181404_2182355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182465_2182906_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183034_2184264_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184302_2185124_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185177_2186329_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186420_2186909_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189459_2192009_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192079_2194653_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194918_2195119_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195150_2195312_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195369_2195708_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195856_2196807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197580_2198249_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198230_2200186_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200428_2201178_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201190_2202054_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202057_2203473_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203606_2204335_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204473_2204674_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204849_2205248_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205271_2206672_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206790_2207543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207831_2208509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208535_2209315_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209311_2210196_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210213_2210993_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210977_2211736_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211873_2212509_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212776_2213793_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213890_2214931_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215065_2216358_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217717_2218101_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218118_2218706_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2218743_2219694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219792_2220353_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220349_2220895_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2221090_2222119_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222159_2223500_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223608_2224613_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224719_2227320_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2227418_2228369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	2476001	2534245	4104273	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2476001_2476952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477431_2478088_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478102_2479770_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479772_2480402_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480613_2481708_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481852_2482665_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2482668_2484252_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2484422_2485553_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485739_2486816_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486897_2487548_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487562_2488966_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489249_2490068_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2490064_2490769_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491668_2492784_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492817_2493192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493214_2494372_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494384_2494618_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495252_2498222_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498236_2498446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498597_2499227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2499223_2501281_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501337_2502018_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502014_2502575_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502581_2503679_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503831_2504425_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504421_2505714_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505727_2506270_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506279_2507116_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507149_2508211_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508252_2509305_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509320_2509623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509764_2510715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2510732_2510897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2510893_2512588_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512584_2513670_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513717_2514617_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514627_2515272_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516293_2519536_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519546_2520701_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520927_2521890_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2521988_2522939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523037_2523988_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2523997_2524687_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2524746_2525184_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2525229_2526123_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2526170_2527343_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2527339_2528494_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2528690_2529041_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529030_2529465_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2529481_2530432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2530579_2531047_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531027_2532185_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2532250_2533177_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2533294_2534245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	2576522	2643022	4104273	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576522_2577473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577842_2578415_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578417_2579428_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579420_2579921_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579931_2580273_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2580341_2581076_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581092_2581362_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581384_2582173_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582219_2583236_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583452_2584895_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585073_2586693_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586813_2588634_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588712_2590245_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2590278_2591925_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2591994_2593017_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593034_2594168_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594170_2594860_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594859_2595645_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595688_2596453_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596491_2597913_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597978_2598683_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598730_2599150_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599162_2599570_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599753_2600464_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600590_2600881_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600898_2601381_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605886_2607041_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607346_2608363_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608609_2609398_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609464_2610145_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610141_2610912_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611010_2611961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612016_2612934_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612944_2614123_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614142_2615138_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616726_2617335_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617322_2618363_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618380_2619343_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619339_2620533_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620529_2621327_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621352_2622339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622357_2624397_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624598_2625279_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625292_2626204_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626200_2626779_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626917_2627823_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627830_2631250_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631237_2633838_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634793_2635426_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635819_2636578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636574_2637777_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637964_2638915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639822_2640968_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640954_2641710_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641826_2642006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642071_2643022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	2806626	2861143	4104273	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2806626_2807577_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807905_2808511_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808564_2809878_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809952_2810423_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810422_2811211_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811221_2812874_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812961_2813912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815073_2815580_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815576_2816341_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816356_2816641_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816705_2817695_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817866_2818796_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818767_2819454_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819487_2820033_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820077_2821343_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821339_2822242_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823423_2824368_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824462_2825980_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826021_2827650_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827757_2828639_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831751_2832126_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832150_2832489_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832532_2834167_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834205_2835552_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835659_2837081_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837150_2837735_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837837_2838788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838922_2840029_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840039_2841137_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841281_2842487_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842493_2843015_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843011_2843494_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843499_2843751_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843731_2844217_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844352_2847814_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847831_2848716_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848725_2849157_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849403_2849907_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849984_2851385_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851459_2852335_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852331_2853339_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853806_2854112_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854202_2854793_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854983_2856000_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856191_2858528_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858610_2859045_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859143_2860094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860192_2861143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	2869168	2925953	4104273	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2869168_2870119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871825_2872092_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872799_2873138_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877690_2878293_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878389_2879679_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879736_2880468_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880464_2881268_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881264_2882353_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882349_2883279_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883427_2884573_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884594_2885545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885875_2889697_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889853_2890522_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890526_2892200_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892218_2893538_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893542_2895858_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895913_2898082_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898078_2903259_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903357_2903672_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903899_2904145_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904239_2904758_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904857_2906063_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906178_2907576_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907692_2908271_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908343_2909735_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909902_2910853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911133_2911754_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911750_2912164_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912160_2913204_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913259_2913448_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913457_2914222_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914312_2914969_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915060_2915819_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915844_2917446_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917646_2918651_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918751_2919015_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919132_2919909_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920499_2921450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923833_2924946_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925002_2925953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	2956339	3000030	4104273	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2956339_2957290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957410_2958307_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960584_2962810_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962974_2964063_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964019_2964673_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964720_2965518_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966049_2967000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967080_2968229_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968285_2969236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969334_2969640_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969668_2970103_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970104_2971349_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971345_2972056_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972070_2972982_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973344_2973749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973745_2974204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974210_2975119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975115_2975982_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975968_2976796_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976806_2977934_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979011_2980250_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980291_2981554_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981560_2982313_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982364_2982550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982825_2983290_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983321_2983981_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984125_2986234_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986230_2987181_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987284_2987905_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988008_2988749_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989883_2991008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991053_2991422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991663_2992614_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993649_2994192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994389_2994560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994577_2995528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995524_2996433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996559_2997396_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997908_2999018_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999079_3000030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	3184447	3246681	4104273	protease,transposase	Xanthomonas_phage(33.33%)	51	NA	NA
WP_005012067.1|3184447_3185398_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3185406_3185955_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
WP_003814557.1|3185951_3186560_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852720.1|3186742_3187201_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3187219_3188479_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3188531_3189344_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3189458_3190013_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_023998380.1|3190022_3191012_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3191191_3191911_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3191927_3194663_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3194842_3195829_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_003814566.1|3195870_3196365_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3196476_3197400_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3197628_3198813_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3199001_3200228_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3200232_3201054_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3201066_3202017_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3202013_3203420_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3203416_3204490_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3204486_3205680_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3205676_3207209_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3207205_3208375_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3208364_3211202_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3211198_3212929_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3212925_3213204_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3213203_3214298_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3214306_3214735_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3215537_3217346_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3217385_3218465_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3218461_3219655_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3219804_3220083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995307.1|3220412_3220778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3227529_3228006_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3228158_3229271_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3229338_3229899_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3229922_3230255_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3230238_3231927_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3232046_3232835_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3233542_3234493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3234937_3235249_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3235248_3235779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3235941_3236892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3237181_3237646_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3237660_3239166_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3239419_3241027_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3241082_3241988_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3242428_3243379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3243460_3244042_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3244466_3244772_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3244785_3246120_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3246141_3246681_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 28
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	3265104	3317023	4104273	holin,tRNA,transposase	Tupanvirus(16.67%)	40	NA	NA
WP_010931277.1|3265104_3265440_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3265439_3266282_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3266380_3267331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3267395_3268367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3268430_3269450_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3269451_3270825_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3271102_3271783_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|3271858_3273922_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|3273918_3275013_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3275027_3276287_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|3276306_3277995_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|3278269_3279022_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3279160_3280111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3280423_3281902_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3281908_3283018_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3283029_3283710_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3283731_3284487_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3284622_3285507_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3285594_3286176_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3286436_3286736_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3286887_3287367_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3288086_3289523_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3289519_3290023_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3290038_3290989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3291516_3292290_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3292422_3293433_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3293584_3295240_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3295294_3295636_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3295649_3297089_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3297221_3298037_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3298230_3299181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3300568_3301516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3301742_3302483_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3302568_3303519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3304960_3306532_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3306864_3308718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3308762_3311327_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3311745_3312696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3315561_3316056_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3316072_3317023_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	3398787	3443859	4104273	tRNA,transposase	Staphylococcus_phage(20.0%)	37	NA	NA
WP_005012067.1|3398787_3399738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3400504_3401599_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3401591_3402926_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3402879_3403563_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3403588_3404752_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3404748_3405750_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3405749_3406622_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3406618_3407368_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3407364_3408156_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3408152_3409292_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3409567_3410353_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3410386_3411169_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3411172_3411562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3412701_3413565_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3413600_3414689_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3414685_3415636_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3415989_3418968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3419894_3420773_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3422721_3423672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3423668_3424136_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3424178_3424949_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3424969_3425770_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3425780_3427190_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3427284_3428070_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_023994644.1|3428309_3429326_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3429433_3429826_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3429963_3430644_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3430648_3431620_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3431715_3432666_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3434170_3434872_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3434871_3436296_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3437365_3438706_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3438821_3440585_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3440696_3441575_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3441687_3442503_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3442506_3442758_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3442842_3443859_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	3461603	3514008	4104273	tRNA,transposase	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3461603_3462620_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3462715_3463426_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3463422_3464412_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3464507_3466139_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3466141_3466879_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3467034_3467907_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3468256_3469396_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3469392_3470052_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3470123_3470756_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3470785_3471304_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3471314_3472424_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3472470_3473325_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3473326_3474229_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929969.1|3475451_3476402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3478156_3479146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3479321_3480110_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3480106_3481138_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3481156_3481720_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3481775_3483296_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3483559_3484264_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3484271_3485000_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3485114_3485489_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3485531_3486821_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3486817_3487987_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3487983_3488823_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3488882_3489818_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3489830_3490781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3490879_3491842_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3491873_3492233_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3492357_3493260_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3493261_3495034_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3495068_3495845_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3497168_3498119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3498970_3499291_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3499363_3500245_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3500361_3500604_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3500741_3501212_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3501224_3501764_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3501798_3503340_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3503438_3504344_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3504386_3505787_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3505796_3506219_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3506401_3507286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3507361_3508438_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3508744_3510847_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3510889_3512959_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3513057_3514008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	3531126	3583878	4104273	tRNA,transposase	Catovirus(11.11%)	45	NA	NA
WP_010931400.1|3531126_3532077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3532417_3533368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3533466_3534417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3534713_3535211_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3535253_3537029_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3537036_3537903_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3537909_3538644_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3539813_3540608_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3540897_3541488_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3541521_3542850_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3542924_3544070_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3544181_3545180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3545142_3545577_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3547093_3547978_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3547974_3549180_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3549176_3550037_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3550149_3551940_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3551980_3552625_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3552646_3552955_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3553120_3554407_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3555840_3556791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3558742_3559957_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3560062_3561052_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3561048_3561657_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3561669_3562299_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3562295_3562916_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3562947_3563739_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3564590_3565046_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3565064_3565991_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3566044_3567331_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3568261_3569134_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3569130_3570081_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3570179_3571130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3571234_3571465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3571591_3571981_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3571997_3574379_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3574371_3575748_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3575763_3576759_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3576777_3577770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3578010_3578571_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3578575_3578902_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3578938_3579751_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3579761_3580844_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3580930_3582205_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3582927_3583878_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP017925	Bordetella pertussis strain J203 chromosome, complete genome	4104273	4003341	4068253	4104273	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4003341_4003827_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003915_4004053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4004045_4005026_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4005292_4006102_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006141_4006822_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006815_4007274_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4007285_4007648_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007730_4008414_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4008469_4008778_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008796_4009111_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009107_4011582_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011589_4012981_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4012977_4013163_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013141_4013843_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013839_4014661_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014641_4015766_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015758_4016778_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4016983_4017874_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018118_4018910_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4018992_4019367_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4019344_4020754_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020746_4022129_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4022463_4024068_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4024145_4025117_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025127_4026054_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4026444_4027395_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027564_4028791_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028990_4029857_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029849_4030812_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030912_4031863_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031961_4032912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4033010_4033961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033957_4035451_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035447_4038555_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038551_4041620_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041616_4042867_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4043047_4043800_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4043841_4044486_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4044494_4045475_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045574_4046318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4046400_4046748_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046845_4047688_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047732_4048620_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048646_4048835_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048932_4050390_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050376_4051903_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051921_4052389_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4052388_4053411_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053531_4054272_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4054326_4055427_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055428_4056619_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056738_4057755_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058073_4058745_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058741_4059650_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059861_4060509_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4064369_4065437_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065447_4066257_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4066346_4067120_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4067302_4068253_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
