The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	27282	78584	4106356	tRNA,transposase	Synechococcus_phage(25.0%)	49	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814398.1|35571_36762_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37011_37923_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37924_40063_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40059_40599_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40602_41331_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41317_42211_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42281_42677_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42686_43217_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43345_43645_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43662_44613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70128_70443_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71635_73543_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73704_74325_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74356_74938_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75026_75278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75279_76122_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76227_77637_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	107426	175251	4106356	tRNA,transposase	Bacillus_phage(22.22%)	56	NA	NA
WP_010929626.1|107426_108377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122169_123075_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123071_123905_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124741_125752_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125748_126138_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127031_128285_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128375_130076_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130502_131150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131148_132588_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132698_132983_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133010_133889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135155_136106_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815155.1|136524_138033_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138779_142742_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142794_143577_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143664_144888_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144871_145804_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145809_146622_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929647.1|147935_148907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149025_149808_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150574_151555_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151551_152280_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152304_152736_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152837_153713_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853237.1|153764_154964_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929652.1|155068_155530_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155635_157033_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157029_157707_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157762_159073_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159084_159783_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159946_160723_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160888_161911_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162139_162775_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_023995348.1|162780_164334_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	178633	236268	4106356	tRNA,transposase,protease	Klosneuvirus(14.29%)	47	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929699.1|206740_207064_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207168_208209_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208214_208994_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209361_209637_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210337_211024_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211222_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212055_212781_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214273_215206_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219052_221896_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224451_225402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225619_226315_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226331_227744_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227856_229287_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229328_231242_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231560_232127_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232217_233219_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233333_234284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234370_235321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235317_236268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	250682	303017	4106356	tRNA,transposase,protease	Bacillus_phage(25.0%)	46	NA	NA
WP_003814337.1|250682_251624_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251620_253510_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253596_254235_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254377_255763_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255693_256230_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256381_257773_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257789_258770_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258905_259889_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262721_263846_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263859_264840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265570_266521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267080_267626_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267751_269329_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269344_270499_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270512_270638_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270634_272386_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272382_274062_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274124_274673_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275815_276094_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277137_278088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278364_278526_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279192_279642_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279651_280263_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280421_281270_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281295_282678_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282742_283384_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283523_283982_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284006_284783_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284836_285973_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285969_286920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287018_287645_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287667_288594_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288602_290189_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290185_291190_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291389_292250_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292281_293283_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293353_294163_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294240_296100_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296228_297431_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297544_298426_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299928_300489_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300548_301499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301690_301978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302066_303017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	390852	448361	4106356	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390852_391803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391939_392857_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392853_393102_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393098_394304_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394376_395372_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395394_396615_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396611_397256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398986_399796_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400100_401054_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401152_402136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402062_402764_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402812_403583_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403579_404758_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404925_406632_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406628_407525_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407565_409155_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409204_410197_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410265_410865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411325_412306_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412381_413332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413420_414335_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414331_414991_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415080_416004_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416009_416465_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416461_417565_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417523_417793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417752_419372_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419368_420427_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420556_421051_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421143_422121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422316_423522_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423518_425030_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425045_426359_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426549_426729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427138_427873_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430317_431268_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431399_431798_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432208_432679_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432767_433112_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433211_434612_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436400_436919_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437029_437785_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437980_439213_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439205_439991_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440057_441029_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441039_442017_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442142_443315_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443341_444370_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444435_445629_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447410_448361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	589366	650557	4106356	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589366_590317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590792_591683_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591679_592501_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592700_593192_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593210_594284_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594330_595434_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595509_596130_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596150_596660_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596714_596966_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597029_598163_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598170_598557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598553_601073_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601501_601840_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601836_602343_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602404_603205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603315_604257_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604350_605886_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607565_609416_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609419_610253_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610252_611194_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611445_612417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612558_614847_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615153_616062_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616116_617082_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617156_618818_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618889_619600_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619748_620699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621397_621781_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621838_622441_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622458_622860_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622975_623887_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623883_624465_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625259_625994_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626034_627084_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627231_627810_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628196_629174_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629267_633662_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633862_634711_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634869_635682_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635737_636688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636786_637587_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637648_638032_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638043_639396_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639683_640013_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640015_640765_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640947_641868_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641914_642127_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642149_642572_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642588_643689_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643785_645303_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645378_646218_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646239_647112_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647202_648297_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648590_649541_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649615_650557_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	655881	702072	4106356	tail,tRNA,transposase,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655881_656907_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656947_657187_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657256_658846_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658845_659394_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659474_660047_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660065_660977_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661050_662019_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662141_663215_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663219_665040_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665116_666067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666155_666491_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666624_667275_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667296_668715_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668784_669540_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669508_670267_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670277_671159_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671175_671883_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671885_672644_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672853_674596_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674588_675113_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675152_675947_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676114_677188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677286_678237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678488_678695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678766_679378_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679932_680184_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680176_680866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681122_682073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682712_683198_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683184_684462_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684464_685883_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685911_686967_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686972_687215_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687337_687940_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688368_689319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689993_690245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690307_690790_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690803_690992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690991_691387_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691383_691782_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691778_692201_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692208_692709_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692963_693482_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693491_693821_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693838_694129_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694154_696767_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696776_697136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697203_697737_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697733_698123_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698115_702072_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	708238	762168	4106356	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708238_709969_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710021_710450_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710452_711133_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711132_711591_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711627_712602_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712618_713935_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713966_714464_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714550_715240_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715239_716289_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716285_717080_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717248_717599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717574_718132_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719261_720212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722349_723579_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723581_725024_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725128_726274_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726305_727103_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727127_728687_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728683_731056_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731165_732269_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732268_732961_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733104_733806_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733790_734168_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734899_735850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736009_736882_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737222_737441_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737480_738860_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738901_740299_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740338_741991_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741994_742879_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742878_743820_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743898_745518_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745684_746500_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746567_747137_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747137_748088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748742_749840_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749873_751139_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751296_752247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752490_753081_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753096_755541_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755660_756632_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756763_757288_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757247_758198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758419_760615_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760687_761095_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761217_762168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	884756	952732	4106356	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884756_885773_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885969_886953_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888551_889940_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889970_890960_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891070_892303_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892584_893385_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893407_895639_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896426_896873_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896894_897641_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897784_898762_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899395_900007_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900000_901218_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901358_902309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902305_903025_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903145_905305_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905395_905665_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905753_905960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905958_906486_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906504_907284_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907451_908468_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908540_909032_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909042_910758_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911921_912872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912868_914701_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915099_915759_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916286_916967_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917248_917965_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917979_919281_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921425_924314_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924537_925890_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925918_926440_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926436_927891_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927925_928174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928279_929155_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929180_930236_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930248_931040_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931072_932443_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933619_934570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934622_934844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935003_935216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935335_936454_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936550_936766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936959_937211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937323_938274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938270_938654_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938708_940523_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940672_941500_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941545_942526_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942522_942735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942731_943913_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944076_944811_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944812_947425_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947560_949474_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950089_950500_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950597_951683_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951781_952732_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	996261	1068778	4106356	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996261_997212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997316_998366_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998503_999520_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001028_1001601_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001660_1002392_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002443_1003361_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004168_1007348_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007344_1008727_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008796_1009048_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009193_1009808_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1009994_1012055_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012184_1013036_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013032_1013659_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013655_1015410_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015702_1018408_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018420_1020082_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020094_1021885_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022106_1023282_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023324_1024275_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024373_1025114_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025308_1027345_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027362_1028373_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028490_1029684_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029713_1030487_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030483_1031674_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031699_1032638_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032634_1034983_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035137_1035779_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037108_1037261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037292_1037841_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037859_1038345_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038522_1039461_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039463_1039781_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039826_1040771_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042451_1043102_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043155_1043491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043487_1044348_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044364_1044646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044719_1044983_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045226_1046177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046475_1047213_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047648_1047972_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048006_1048567_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048687_1049563_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049575_1050523_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050624_1050918_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050944_1053002_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053016_1053517_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053590_1055297_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056160_1057213_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057265_1057655_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057663_1058296_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058395_1059412_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060242_1061250_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061246_1062890_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062886_1063774_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063914_1064388_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064377_1065400_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065396_1066824_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067761_1068778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	1072531	1125459	4106356	holin,tRNA,transposase	uncultured_Mediterranean_phage(16.67%)	43	NA	NA
WP_010930155.1|1072531_1073668_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073664_1074738_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074895_1076332_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076422_1077064_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077400_1078417_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080459_1081410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809431.1|1084296_1085013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085097_1085415_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085455_1085869_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085870_1086230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086272_1087817_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087900_1088731_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088765_1089920_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089962_1090835_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090951_1093240_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094446_1094911_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094937_1095888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095905_1096043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096255_1097032_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097076_1097934_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097955_1098972_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099106_1100147_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100341_1102423_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102658_1104152_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104382_1105177_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105397_1106756_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106752_1107595_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107613_1109500_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109441_1109693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109737_1110370_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110388_1110991_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111142_1112093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112673_1113381_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113739_1114726_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114865_1115879_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115875_1116826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116938_1117397_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117433_1118747_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118764_1119136_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119132_1120596_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120736_1121465_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121446_1124296_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124508_1125459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	1152176	1218695	4106356	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152176_1153973_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153972_1154941_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155010_1155856_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155923_1156478_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156524_1157475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157573_1158206_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158370_1160653_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160807_1163504_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163629_1164118_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166528_1169399_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169444_1170659_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170888_1172316_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172413_1173505_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173517_1174276_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174363_1175266_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175262_1176213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176342_1177326_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177380_1178103_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179581_1180937_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181017_1183393_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183557_1185633_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185694_1186489_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186596_1187559_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187546_1188302_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188409_1190047_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190114_1190852_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190954_1191530_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191702_1192239_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192271_1192586_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192601_1193447_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193485_1194865_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194942_1195824_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195922_1196873_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196869_1197280_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197387_1198242_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198234_1199197_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199242_1200367_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200472_1201351_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201475_1202255_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202408_1203830_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204264_1205962_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206188_1207130_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207456_1208203_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208210_1209137_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209258_1210176_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210215_1211169_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211193_1211772_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213445_1214054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214131_1214485_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214568_1215558_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215760_1216711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216797_1217748_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217744_1218695_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	1291657	1337386	4106356	tRNA,transposase	Salmonella_phage(33.33%)	44	NA	NA
WP_005013747.1|1291657_1292608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293229_1294957_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295068_1296427_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296718_1297669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297709_1298780_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298802_1299681_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299852_1300824_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300986_1301829_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301990_1302671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302664_1303834_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303830_1304862_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304929_1306147_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306181_1307714_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307794_1308418_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308448_1309060_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309095_1309566_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1309997_1311002_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311038_1312553_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312556_1313516_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313544_1314348_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314349_1315984_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316067_1317129_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317327_1317597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317600_1318125_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318540_1319491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319487_1320522_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320630_1321269_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321563_1321791_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321913_1322627_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322871_1323822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323961_1324207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324321_1325770_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325880_1326831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1326827_1327277_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_003812834.1|1328756_1328954_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1328969_1329329_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1329403_1330426_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1330438_1332856_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1332873_1333203_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1333261_1333672_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1334171_1335263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1335446_1336043_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1336142_1336325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1336435_1337386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	1417063	1469215	4106356	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1417063_1418014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418180_1418534_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418546_1418909_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418950_1419376_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419578_1420835_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421033_1422014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422163_1423405_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423503_1424454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424462_1425158_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427978_1428578_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428588_1430754_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430777_1432562_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432561_1432651_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433345_1433618_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433617_1435684_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435680_1436631_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436729_1437680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437795_1438128_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438124_1438811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438797_1439757_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439789_1442159_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442158_1442791_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442892_1444233_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444279_1445635_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445925_1446162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446349_1446667_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446939_1447455_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447725_1448481_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448819_1449026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449033_1449693_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449987_1452192_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452302_1453526_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453648_1454623_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454690_1455884_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455898_1456699_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456695_1458552_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458548_1459154_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459172_1460558_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461283_1462510_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462598_1463381_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463479_1464430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464456_1465230_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465241_1466483_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468264_1469215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	1513140	1573052	4106356	tRNA,transposase	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1513140_1513629_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513746_1514325_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514430_1514799_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514897_1515848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515854_1516967_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517653_1518856_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1519059_1521720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1521732_1525137_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525804_1528030_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528076_1528403_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528453_1529062_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529160_1530111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852714.1|1530209_1531160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531229_1531994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1531990_1532527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532693_1533545_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533604_1534231_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534227_1535178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535276_1536389_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536378_1537380_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537485_1538997_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1538993_1540298_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540409_1540970_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541237_1541792_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542247_1542463_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542717_1545315_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545311_1546499_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547157_1547772_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547860_1548982_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1548999_1549905_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550797_1551748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551929_1552682_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552750_1553410_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553406_1554135_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554147_1556427_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556451_1556655_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556696_1557329_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557464_1558382_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558378_1559092_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559329_1560100_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560104_1560704_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560948_1562439_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562497_1562782_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563347_1564274_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564410_1565151_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565317_1566694_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566875_1567781_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569432_1571235_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571352_1572003_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572101_1573052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	1618224	1673815	4106356	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618224_1619175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619233_1620007_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1619999_1621556_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621552_1622503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623829_1624432_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624671_1625373_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625366_1626149_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626333_1627284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627382_1628120_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628309_1629068_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629114_1630104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630281_1631250_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632789_1633758_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633766_1634708_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635181_1636192_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636182_1637697_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637693_1639040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639042_1640077_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640126_1641752_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642304_1643255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643359_1644307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644360_1646175_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646167_1646842_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646971_1650046_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650059_1650359_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650673_1651297_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651540_1652410_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652387_1653332_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653417_1654344_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654456_1655236_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655226_1656423_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656453_1657404_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657625_1658315_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658379_1659135_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659186_1660179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660188_1661142_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661257_1662220_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663621_1664050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664046_1664997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665290_1666013_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666451_1667639_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667642_1667993_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669742_1670714_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670727_1671441_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671445_1672363_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672469_1672766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672864_1673815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	1831580	1890850	4106356	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831580_1832531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832655_1833465_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833665_1834616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835889_1837107_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838163_1839066_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839142_1840015_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840145_1840514_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840571_1841618_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841813_1843070_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843074_1844412_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844561_1845518_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845620_1846553_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846668_1846989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846981_1847341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847388_1848963_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849015_1849960_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849977_1850808_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850800_1852435_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852431_1853787_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854693_1856271_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856274_1857549_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857646_1858021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859736_1860870_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860907_1861513_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861509_1862328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862399_1865024_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865010_1865265_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865331_1865913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866216_1866477_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866642_1867266_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867265_1868039_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868035_1869244_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869269_1869743_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869816_1870767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870865_1871816_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871914_1873264_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874029_1874785_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874877_1877760_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878082_1878508_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878535_1879684_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879680_1880187_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880202_1881489_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881538_1882834_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882835_1883474_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883479_1884637_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884663_1886019_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886022_1887093_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887231_1887468_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887555_1888662_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888627_1889932_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889950_1890850_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	1901090	1944364	4106356	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1901090_1902041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902139_1903090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903289_1904375_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904390_1905152_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905148_1906072_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906170_1906695_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906703_1907447_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907542_1907782_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907795_1907948_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908033_1909524_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909615_1910554_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910550_1910727_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910729_1911392_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913013_1913157_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913153_1914128_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914294_1915245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915241_1916516_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916619_1917813_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917809_1918463_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918459_1919896_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919883_1920243_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921057_1921198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921215_1922166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922162_1924028_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924285_1925806_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925893_1926544_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927492_1928788_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928809_1929694_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929792_1930668_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930657_1931014_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931144_1932119_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932248_1932428_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932525_1933050_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933060_1933897_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934009_1934381_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934377_1934929_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934944_1936636_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936684_1937365_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937612_1938077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938246_1939176_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939188_1939836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939909_1941727_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941810_1942761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943413_1944364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	1974137	2038506	4106356	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974137_1975088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975309_1976260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976358_1977324_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977461_1978361_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980955_1982443_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982453_1983650_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983722_1985042_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985038_1985914_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985944_1987093_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987110_1987425_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987446_1988169_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988168_1988987_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1988991_1989519_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989524_1990781_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991139_1992279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992356_1993229_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994099_1995050_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995009_1995645_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996004_1997327_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997645_1998467_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999891_2000464_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000503_2002333_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002295_2003354_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003391_2003853_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003937_2004684_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006174_2009405_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009471_2010803_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011055_2011430_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011532_2012711_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012721_2013312_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013422_2014229_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014254_2015049_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016049_2017024_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017182_2017695_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017851_2018823_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020567_2021374_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2021370_2022672_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022622_2023387_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023500_2024271_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024355_2025543_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025615_2025990_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026090_2027353_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027349_2028207_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028379_2029381_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029832_2030783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032346_2033498_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033866_2034103_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034166_2034334_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034447_2036343_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036506_2037457_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037555_2038506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	2174090	2228359	4106356	tRNA,transposase	Klosneuvirus(15.38%)	47	NA	NA
WP_010930542.1|2174090_2176952_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176954_2177461_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177565_2178774_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178775_2179714_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179875_2180349_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180345_2181296_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181406_2181847_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181975_2183205_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183243_2184065_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184118_2185270_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185361_2185850_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188400_2190950_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191020_2193594_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193859_2194060_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194091_2194253_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194310_2194649_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194797_2195748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196522_2197191_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2197172_2199128_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199370_2200120_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200132_2200996_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2200999_2202415_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202548_2203277_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203415_2203616_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203791_2204190_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204213_2205614_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205732_2206485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2206773_2207451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207477_2208257_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208253_2209138_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209155_2209935_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209919_2210678_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2210815_2211451_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211718_2212735_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212832_2213873_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214007_2215300_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216659_2217043_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217060_2217648_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217685_2218636_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218734_2219685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219783_2220344_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220340_2220886_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_029444001.1|2221158_2222109_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222149_2223490_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223598_2224603_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224709_2227310_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2227408_2228359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	2576511	2643011	4106356	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576511_2577462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577831_2578404_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578406_2579417_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579409_2579910_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579920_2580262_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2580330_2581065_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581081_2581351_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581373_2582162_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582208_2583225_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583441_2584884_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585062_2586682_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586802_2588623_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588701_2590234_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2590267_2591914_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2591983_2593006_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593023_2594157_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594159_2594849_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594848_2595634_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595677_2596442_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596480_2597902_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597967_2598672_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598719_2599139_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599151_2599559_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599742_2600453_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600579_2600870_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600887_2601370_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605875_2607030_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607335_2608352_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608598_2609387_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609453_2610134_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610130_2610901_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2610999_2611950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612005_2612923_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612933_2614112_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614131_2615127_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616715_2617324_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617311_2618352_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618369_2619332_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619328_2620522_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620518_2621316_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621341_2622328_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622346_2624386_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624587_2625268_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625281_2626193_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626189_2626768_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626906_2627812_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627819_2631239_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631226_2633827_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634782_2635415_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635808_2636567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636563_2637766_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637953_2638904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639811_2640957_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640943_2641699_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641815_2641995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642060_2643011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	2671126	2708538	4106356	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2671126_2672077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2672175_2673126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2673218_2673758_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2673864_2674209_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2674266_2675715_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2675902_2676238_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2677865_2679044_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2679126_2679627_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2679736_2680438_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2680449_2680914_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2680928_2681204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2681200_2681977_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2682005_2682833_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2682958_2683429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2683555_2684449_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2684496_2685678_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2685690_2686506_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2686639_2687167_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2687163_2687661_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2687808_2688186_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2688407_2689358_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2689456_2690068_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2690302_2691430_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2691540_2692629_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2692681_2693533_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2693552_2694434_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2694610_2695924_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2696134_2696968_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2696964_2697546_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2697899_2698850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2698865_2699981_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2700083_2701010_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2701009_2702248_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2702244_2703012_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2703012_2703714_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2703795_2704242_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2705131_2705770_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2706538_2707489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2707587_2708538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	2807665	2862182	4106356	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807665_2808616_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808944_2809550_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809603_2810917_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2810991_2811462_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811461_2812250_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812260_2813913_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814000_2814951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816112_2816619_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816615_2817380_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817395_2817680_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817744_2818734_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818905_2819835_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819806_2820493_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820526_2821072_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821116_2822382_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822378_2823281_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824462_2825407_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825501_2827019_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827060_2828689_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828796_2829678_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832790_2833165_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833189_2833528_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833571_2835206_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835244_2836591_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836698_2838120_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838189_2838774_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838876_2839827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839961_2841068_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841078_2842176_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842320_2843526_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843532_2844054_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844050_2844533_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844538_2844790_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844770_2845256_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845391_2848853_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848870_2849755_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849764_2850196_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850442_2850946_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851023_2852424_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852498_2853374_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853370_2854378_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854845_2855151_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855241_2855832_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856022_2857039_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857230_2859567_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859649_2860084_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860182_2861133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861231_2862182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	2870207	2926993	4106356	transposase,protease	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2870207_2871158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872864_2873131_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873838_2874177_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878730_2879333_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879429_2880719_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880776_2881508_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881504_2882308_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882304_2883393_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883389_2884319_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884467_2885613_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885634_2886585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2886915_2890737_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890893_2891562_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891566_2893240_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893258_2894578_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894582_2896898_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896953_2899122_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899118_2904299_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904397_2904712_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904939_2905185_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905279_2905798_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905897_2907103_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907218_2908616_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908732_2909311_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909383_2910775_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910942_2911893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912173_2912794_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912790_2913204_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913200_2914244_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914299_2914488_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914497_2915262_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915352_2916009_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916100_2916859_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916884_2918486_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918686_2919691_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919791_2920055_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920172_2920949_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921539_2922490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924873_2925986_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926042_2926993_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	2967088	3001069	4106356	transposase	Bacillus_virus(50.0%)	34	NA	NA
WP_010930176.1|2967088_2968039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968119_2969268_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969324_2970275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970373_2970679_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970707_2971142_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971143_2972388_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972384_2973095_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973109_2974021_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974383_2974788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974784_2975243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975249_2976158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976154_2977021_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977007_2977835_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977845_2978973_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980050_2981289_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981330_2982593_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982599_2983352_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983403_2983589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983864_2984329_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984360_2985020_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985164_2987273_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987269_2988220_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988323_2988944_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989047_2989788_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990922_2992047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992092_2992461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992702_2993653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994688_2995231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995428_2995599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995616_2996567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996563_2997472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997598_2998435_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998947_3000057_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|3000118_3001069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	3400874	3464706	4106356	tRNA,transposase	Staphylococcus_phage(12.5%)	46	NA	NA
WP_005012067.1|3400874_3401825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402591_3403686_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403678_3405013_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404966_3405650_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405675_3406839_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406835_3407837_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407836_3408709_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408705_3409455_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409451_3410243_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410239_3411379_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411654_3412440_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412473_3413256_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413259_3413649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414788_3415652_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415687_3416776_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_019247959.1|3418075_3421054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421980_3422859_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424807_3425758_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425754_3426222_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426264_3427035_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427055_3427856_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427866_3429276_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429370_3430156_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430395_3431412_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431519_3431912_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432049_3432730_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432734_3433706_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433801_3434752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3436256_3436958_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3436957_3438382_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3439451_3440792_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3440907_3442671_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442782_3443661_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443773_3444589_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444592_3444844_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444928_3445945_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446275_3446497_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448857_3449775_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450272_3451481_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451560_3453132_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453249_3454185_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454373_3455318_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455885_3461603_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461608_3462736_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462791_3463418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463689_3464706_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	3469120	3587013	4106356	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_019247745.1|3469120_3469993_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470342_3471482_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471478_3472138_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472209_3472842_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472871_3473390_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473400_3474510_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474556_3475411_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475412_3476315_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477537_3478488_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480242_3481232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481407_3482196_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482192_3483224_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483242_3483806_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483861_3485382_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485645_3486350_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486357_3487086_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487200_3487575_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487617_3488907_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488903_3490073_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490069_3490909_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490968_3491904_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491916_3492867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492965_3493928_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493959_3494319_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494443_3495346_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495347_3497120_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497154_3497931_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499254_3500205_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3501056_3501377_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3501449_3502331_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3502447_3502690_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3502827_3503298_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3503310_3503850_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3503884_3505426_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3505524_3506430_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3506472_3507873_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3507882_3508305_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3508487_3509372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3509447_3510524_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3510830_3512933_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3512975_3515045_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3515143_3516094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516222_3517356_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517399_3518305_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518307_3520008_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520004_3520925_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520932_3521910_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521968_3523003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3524977_3525214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525340_3526204_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526292_3527114_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527193_3527931_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527927_3528920_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529072_3529696_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529740_3530889_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533212_3534163_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534503_3535454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535552_3536503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536799_3537297_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537339_3539115_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539122_3539989_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3539995_3540730_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541899_3542694_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3542983_3543574_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543607_3544936_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545010_3546156_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546267_3547266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547228_3547663_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549179_3550064_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550060_3551266_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551262_3552123_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552235_3554026_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554066_3554711_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554732_3555041_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555206_3556493_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557926_3558877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560828_3562043_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562148_3563138_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563134_3563743_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563755_3564385_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564381_3565002_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565033_3565825_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566676_3567132_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567150_3568077_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568130_3569417_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570347_3571220_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571216_3572167_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572265_3573216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3573320_3573551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3573677_3574067_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3574083_3576465_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3576457_3577834_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3577849_3578845_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3578863_3579856_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3580096_3580657_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3580661_3580988_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3581024_3581837_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3581847_3582930_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3583016_3584291_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3585013_3585964_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3586062_3587013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017924	Bordetella pertussis strain J173 chromosome, complete genome	4106356	3706387	3839313	4106356	integrase,tRNA,transposase	uncultured_Mediterranean_phage(10.34%)	114	3751030:3751047	3795670:3795687
WP_005013747.1|3706387_3707338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3707334_3707970_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3708099_3708999_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3709094_3709586_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3709632_3710598_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3711731_3712973_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3713086_3714103_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3714137_3714614_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3714756_3715665_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3715778_3716891_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3716991_3717477_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3717613_3718864_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3718965_3719478_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3719576_3720527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3720592_3721531_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3721553_3722180_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3722176_3722833_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3722829_3723432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3723438_3724026_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3724206_3724776_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3724846_3726166_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3726272_3726464_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3726715_3728005_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3728159_3729155_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3729239_3729914_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3729910_3730861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3731022_3732264_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3732260_3733205_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3733323_3734274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3734233_3735163_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3735216_3735552_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3735596_3736361_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3736384_3737125_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3737132_3738686_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3738720_3739698_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3739970_3740552_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3740603_3747506_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3747952_3748084_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3748349_3748556_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3749560_3750220_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3750247_3751393_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3751030:3751047	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3751533_3751869_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3751943_3752804_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3753067_3753769_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3753938_3754334_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3754443_3755394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3755404_3756046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3756212_3756455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3756553_3757504_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3757539_3758007_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3758240_3758618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3758614_3758797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3758800_3759787_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3759783_3760431_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3760488_3761016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3761052_3762237_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3762247_3762589_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3762701_3762902_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3762898_3763888_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3765374_3767345_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3767586_3767985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3767993_3768917_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3769374_3770325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3770555_3772247_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3772295_3772568_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3772564_3772936_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3773031_3773166_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3773571_3774981_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3774983_3776093_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3776187_3778641_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3778759_3779551_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3779670_3781098_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3781136_3782108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3782526_3783690_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3783777_3784623_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3786179_3787130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3787684_3788059_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3788133_3789192_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3789215_3790166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3793047_3794217_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3794317_3795925_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3795670:3795687	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3795971_3797993_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3798021_3798267_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3798280_3799471_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3799666_3800632_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3800654_3801794_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3802005_3802968_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3803091_3805116_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3805312_3807556_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3807834_3808293_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3809220_3811842_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3811905_3814533_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3814684_3815749_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3815748_3816519_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3816527_3817361_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3817373_3818153_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3818226_3819660_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3819687_3820446_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3820501_3822352_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3822445_3822922_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3822938_3823859_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3823965_3824466_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3824839_3825532_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3825840_3826791_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3826787_3830561_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3830897_3832787_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3832798_3833692_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3833795_3834593_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3834589_3835441_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3835502_3836183_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3836219_3836546_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3836546_3837506_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3837526_3838015_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3838296_3839313_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
