The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	27282	70036	4107548	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	232666	307010	4107548	transposase	uncultured_Mediterranean_phage(15.38%)	56	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268689.1|250561_250738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853374.1|250698_250839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	489373	607268	4107548	transposase,tRNA	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|489373_490324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490422_491373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494549_495362_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495398_495725_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495729_496290_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498552_499929_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502319_502709_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503170_504121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505166_506039_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509254_509710_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512643_513252_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514343_515558_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517509_518460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519893_521180_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|521675_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524263_525124_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526322_527207_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529120_530119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530230_531376_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536397_537264_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539089_539587_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539883_540834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542223_543174_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545497_546646_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|546690_547314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548455_549193_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|549272_550094_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553383_554418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558081_558987_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559030_560164_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560292_561243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561341_563411_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568081_568504_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568513_569914_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569956_570862_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570960_572502_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572536_573076_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573088_573559_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574055_574937_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575009_575330_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|576181_577132_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579266_581039_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583519_584470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584482_585418_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586313_587483_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587479_588769_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|589300_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592580_593144_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594190_594979_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|595154_596144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597900_598851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601878_602988_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602998_603517_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603546_604179_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|604906_606046_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	611682	675515	4107548	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611682_612699_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612970_613597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|613652_614780_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614785_620503_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622203_623139_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626613_627531_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629891_630113_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630443_631460_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631544_631796_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633717_635481_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638006_639431_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639430_640132_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641636_642587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642682_643654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643658_644339_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644476_644869_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644976_645993_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646232_647018_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647112_648522_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649353_650124_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650630_651581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658666_659617_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659613_660702_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660737_661601_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|662740_663130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|663133_663916_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663949_664735_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665010_666150_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666146_666938_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666934_667684_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667680_668553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668552_669554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669550_670714_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|670739_671423_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671376_672711_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672703_673798_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674564_675515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	694426	771735	4107548	transposase,tRNA,integrase,protease	Bacillus_phage(20.0%)	59	741563:741581	761451:761469
WP_023995489.1|694426_695377_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695475_696951_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698538_699426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699428_700370_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703758_705084_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705266_706724_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706687_707185_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|708239_708671_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708800_709469_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710197_711301_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|711406_712681_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712692_713718_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713719_715090_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|715090_716227_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718195_719317_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719313_720468_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720464_721595_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725538_726954_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726971_727682_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727678_729001_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729080_731042_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734988_735198_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735209_736889_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738034_738862_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738860_740747_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740743_741343_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741391_742291_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742499_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743572_744187_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744315_744912_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744908_745691_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747134_748262_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748603_749650_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|750160_752917_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752918_755870_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755885_757097_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|757093_757294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|757280_758231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758247_758742_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759546_760458_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760539_760824_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761607_762558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762976_765541_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765585_767439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|767771_769343_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|770611_770767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|770784_771735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	842536	907476	4107548	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|842536_843487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|843483_845316_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|845714_846374_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|846901_847582_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|847863_848580_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|848594_849896_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|852040_854929_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|855152_856505_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|856533_857055_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|857051_858506_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|858540_858789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|858894_859770_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|859795_860851_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|860863_861655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|861687_863058_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|864234_865185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|865237_865459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|865618_865831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|865950_867069_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|867165_867381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|867574_867826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|867938_868889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|868885_869269_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|869323_871138_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|871287_872115_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|872160_873141_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|873137_873350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|873346_874528_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|874691_875426_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|875427_878040_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|878175_880089_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|880704_881115_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|881212_882298_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|882396_883347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|883343_884318_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|884442_885354_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|885630_886023_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|886152_887103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|887132_887315_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|888087_889269_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|889484_890162_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|890158_890884_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|891009_891591_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|891961_894643_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|894645_895776_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|895768_896854_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|896940_897840_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|897836_899165_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|899179_899851_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|900038_901754_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|901755_902115_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|902306_902621_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|902663_903884_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|903880_904822_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|904818_905808_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|905842_906427_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|906525_907476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	926876	990134	4107548	transposase	Enterococcus_phage(20.0%)	54	NA	NA
WP_005012067.1|926876_927827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|927931_928981_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|929118_930135_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|931643_932216_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|932275_933007_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|933058_933976_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|934783_937963_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|937959_939342_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|939411_939663_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|939808_940423_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|940609_942670_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|942799_943651_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|943647_944274_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|944270_946025_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|946317_949023_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|949035_950697_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|950709_952500_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|952721_953897_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|953939_954890_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|954988_955939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|956037_956778_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|956972_959009_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|959026_960037_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|960154_961348_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|961377_962151_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|962147_963338_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|963363_964302_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|964298_966647_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|966801_967443_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|968772_968925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|968956_969505_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|969523_970009_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|970186_971125_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|971127_971445_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|971490_972435_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|974115_974766_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|974819_975155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|975151_976012_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|976028_976310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|976383_976647_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|976890_977841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|978139_978877_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|979312_979636_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|979670_980231_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|980351_981227_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|981239_982187_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|982288_982582_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|982608_984666_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|984680_985181_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_023995045.1|985254_986019_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_010930146.1|986882_987935_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|987987_988377_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|988385_989018_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|989117_990134_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	996118	1056180	4107548	holin,transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_015041211.1|996118_997546_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|998483_999500_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|999832_1000768_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1000817_1002698_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1002764_1003109_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1003252_1004389_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1004385_1005459_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1005616_1007053_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1007143_1007785_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1008120_1009137_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|1009475_1009730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|1009709_1010660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1013332_1014754_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1015017_1015734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1015818_1016136_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1016176_1016590_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1016591_1016951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1016993_1018538_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1018621_1019452_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1019486_1020641_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1020683_1021556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1021672_1023961_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1025167_1025632_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1025658_1026609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1026626_1026764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1026976_1027753_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1027797_1028655_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1028676_1029693_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1029827_1030868_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1031062_1033144_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1033379_1034873_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1035103_1035898_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1036118_1037477_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1037473_1038316_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1038334_1040221_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1040162_1040414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1040458_1041091_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1041109_1041712_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1041863_1042814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1043394_1044102_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1044460_1045447_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1045586_1046600_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1046596_1047547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1047564_1047705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1047659_1048118_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1048154_1049468_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1049485_1049857_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1049853_1051317_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1051457_1052186_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1052167_1055017_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1055229_1056180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	1246577	1315064	4107548	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1246577_1247528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1248296_1248935_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1249824_1250271_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1250352_1251054_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1251054_1251822_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1251818_1253057_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1253056_1253983_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1254085_1255201_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1255216_1256167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1256520_1257102_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1257098_1257932_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1258142_1259456_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1259632_1260514_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1260533_1261385_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1261437_1262526_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1262636_1263764_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1263998_1264610_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1264708_1265659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1265880_1266258_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1266405_1266903_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1266899_1267427_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1267560_1268376_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1268388_1269570_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1269617_1270511_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1270637_1271108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1271233_1272061_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1272089_1272866_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1272862_1273138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1273152_1273617_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1273628_1274330_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1274439_1274940_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1275022_1276201_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1277828_1278164_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1278351_1279800_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1279857_1280202_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1280308_1280848_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1280940_1281891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1281908_1282148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1282629_1283061_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1283242_1283647_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1284883_1285207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1285209_1286097_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1286129_1286555_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1286626_1286980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1287219_1287726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1287764_1289096_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1289155_1289971_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1289967_1290822_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1293884_1296428_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1297794_1299549_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1299545_1301666_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1301670_1303866_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1303862_1307204_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1310006_1310957_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1311022_1311202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1311318_1312074_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1312060_1313206_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1314113_1315064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	1375555	1431042	4107548	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1375555_1376506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1377707_1378154_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1378146_1379622_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1379618_1380374_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1380366_1381377_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1381366_1383043_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1383355_1383688_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1383701_1384097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1384106_1384433_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1384429_1384756_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1384682_1385096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1385700_1386051_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1386098_1386527_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1386534_1387908_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1388048_1388426_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1388688_1389996_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1390056_1390887_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1390883_1391372_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1391413_1392934_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1392977_1393454_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1394257_1396855_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1396884_1397706_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1398432_1399182_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1399365_1400244_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1400341_1401058_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1401072_1401633_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1401799_1402564_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1402583_1403441_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1403437_1404637_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1404676_1406011_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1406063_1408400_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1408525_1409089_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1409097_1410189_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1410260_1410716_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1410716_1411511_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1411507_1412689_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1412675_1413281_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1413277_1414051_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1414062_1414890_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1415051_1417415_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1417482_1418202_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1418325_1418751_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1418785_1419736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1419853_1420780_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1420845_1422003_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1421983_1422451_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1422598_1423549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1423565_1424000_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1423989_1424340_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1424536_1425691_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1425687_1426860_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1426907_1427801_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1427846_1428284_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1428343_1429033_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1429042_1429993_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1430091_1431042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	1626777	1683988	4107548	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1626777_1627728_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1631474_1632086_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1632308_1633769_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1633865_1635458_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1635811_1636069_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1636070_1637411_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1637506_1638196_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1638208_1639639_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1641363_1642185_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1642195_1643767_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1643795_1644773_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1644799_1645603_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1645599_1646394_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1646401_1647637_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1647650_1648064_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1648813_1649764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1650385_1652113_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1652224_1653583_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1653639_1653858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1653875_1654826_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1654866_1655937_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1655959_1656838_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1657009_1657981_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1658143_1658986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1659147_1659828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1659821_1660991_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1660987_1662019_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1662086_1663304_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1663338_1664871_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1664951_1665575_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1665605_1666217_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1666252_1666723_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1667154_1668159_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1668195_1669710_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1669713_1670673_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1670701_1671505_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1671506_1673141_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1673224_1674286_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1674484_1674754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1674757_1675282_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1675697_1676648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1676644_1677679_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1677787_1678426_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1678720_1678948_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1679070_1679784_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1680028_1680979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1681118_1681364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1681478_1682927_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1683037_1683988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	1774217	1826370	4107548	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1774217_1775168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1775185_1775338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1775334_1775688_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1775700_1776063_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1776104_1776530_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1776732_1777989_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1778187_1779168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1779317_1780559_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1780657_1781608_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1781616_1782312_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1785133_1785733_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1785743_1787909_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1787932_1789717_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1789716_1789806_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1790500_1790773_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1790772_1792839_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1792835_1793786_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1793884_1794835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1794950_1795283_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1795279_1795966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1795952_1796912_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1796944_1799314_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1799313_1799946_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1800047_1801388_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1801434_1802790_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1803080_1803317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1803504_1803822_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1804094_1804610_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1804880_1805636_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1805974_1806181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1806188_1806848_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1807142_1809347_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1809457_1810681_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1810803_1811778_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1811845_1813039_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1813053_1813854_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1813850_1815707_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1815703_1816309_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1816327_1817713_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1818438_1819665_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1819753_1820536_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1820634_1821585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1821611_1822385_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1822396_1823638_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1825419_1826370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	1870294	1938379	4107548	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1870294_1870783_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1870900_1871479_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1871584_1871953_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1872051_1873002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1873008_1874121_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1874807_1876010_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1876213_1878874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1878886_1882291_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1882958_1885184_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1885230_1885557_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1885607_1886216_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1886314_1887265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1887334_1888099_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1888095_1888632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1888798_1889650_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1889709_1890336_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1890332_1891283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1891381_1892494_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1892483_1893485_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1893590_1895102_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1895098_1896403_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1896514_1897075_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1897342_1897897_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1898352_1898568_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1898822_1901420_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1901416_1902604_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1903262_1903877_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1903965_1905087_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1905104_1906010_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1906902_1907853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1908034_1908787_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1908855_1909515_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1909511_1910240_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1910252_1912532_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1912556_1912760_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1912801_1913434_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1913569_1914487_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1914483_1915197_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1915434_1916205_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1916209_1916809_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1917053_1918544_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1918602_1918887_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1919452_1920379_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1920515_1921256_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1921422_1922799_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1922980_1923886_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1925537_1927340_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1927457_1928108_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1928206_1929157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1929178_1930399_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1930584_1931997_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1932060_1933128_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1933127_1934615_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_054604381.1|1934624_1935509_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1935727_1936426_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1936503_1937409_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1937428_1938379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	1974328	2029919	4107548	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1974328_1975279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1975337_1976111_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1976103_1977660_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1977656_1978607_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1979933_1980536_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1980775_1981477_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1981470_1982253_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1982437_1983388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1983486_1984224_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1984413_1985172_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1985218_1986208_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1986385_1987354_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1988893_1989862_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1989870_1990812_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1991285_1992296_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1992286_1993801_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1993797_1995144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1995146_1996181_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1996230_1997856_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1998408_1999359_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1999463_2000411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|2000464_2002279_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|2002271_2002946_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|2003075_2006150_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|2006163_2006463_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|2006777_2007401_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|2007644_2008514_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|2008491_2009436_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|2009521_2010448_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|2010560_2011340_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|2011330_2012527_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|2012557_2013508_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|2013729_2014419_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|2014483_2015239_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|2015290_2016283_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|2016292_2017246_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|2017361_2018324_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|2019725_2020154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2020150_2021101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|2021394_2022117_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|2022555_2023743_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|2023746_2024097_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|2025846_2026818_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|2026831_2027545_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|2027549_2028467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|2028573_2028870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|2028968_2029919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	2200467	2272065	4107548	transposase,tRNA	Faecalibacterium_phage(33.33%)	60	NA	NA
WP_010931070.1|2200467_2201418_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930677.1|2203298_2205011_-	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_010930678.1|2205467_2206286_+	membrane protein	NA	NA	NA	NA	NA
WP_003820212.1|2206383_2206560_+	Flp family type IVb pilin	NA	NA	NA	NA	NA
WP_003820213.1|2206629_2207154_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_010930679.1|2207114_2207558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930680.1|2207559_2208036_+	pilus assembly protein	NA	NA	NA	NA	NA
WP_010930681.1|2208032_2208974_+	Flp pilus assembly protein CpaB	NA	NA	NA	NA	NA
WP_010930682.1|2209029_2210379_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_010930683.1|2210375_2211725_+	pilus assembly protein CpaE	NA	NA	NA	NA	NA
WP_010930684.1|2213083_2214004_+	membrane protein	NA	NA	NA	NA	NA
WP_014486078.1|2214012_2214999_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_010930685.1|2214998_2215841_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930686.1|2216264_2218508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820229.1|2218529_2219921_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810189.1|2220000_2220696_+	DUF2968 domain-containing protein	NA	NA	NA	NA	NA
WP_010930687.1|2220795_2221263_+	DUF1178 family protein	NA	NA	NA	NA	NA
WP_010930688.1|2221320_2222025_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930689.1|2222171_2222741_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930690.1|2222737_2223148_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_003810194.1|2223267_2223825_-	elongation factor P	NA	NA	NA	NA	NA
WP_010930691.1|2223967_2225080_-	elongation factor P maturation arginine rhamnosyltransferase EarP	NA	NA	NA	NA	NA
WP_010930692.1|2225095_2226298_-	DUF2863 family protein	NA	NA	NA	NA	NA
WP_023853586.1|2226404_2227244_+	dioxygenase	NA	NA	NA	NA	NA
WP_003820240.1|2227352_2230058_-	aconitate hydratase AcnA	NA	NA	NA	NA	NA
WP_010930694.1|2230295_2230898_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930695.1|2231174_2233379_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010930696.1|2233541_2234276_+	haloacid dehalogenase type II	NA	NA	NA	NA	NA
WP_005012067.1|2234352_2235303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2235401_2236352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930697.1|2236433_2236982_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930698.1|2236984_2237323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930699.1|2237718_2240310_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_029443737.1|2240376_2241120_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_003810206.1|2241132_2241519_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003810207.1|2241525_2241816_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930701.1|2241951_2242251_+	YciI family protein	NA	NA	NA	NA	NA
WP_010930702.1|2242319_2243222_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010930703.1|2243225_2243996_+	anion permease	NA	NA	NA	NA	NA
WP_019248436.1|2244381_2244831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2244898_2245849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853556.1|2245835_2246066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926318.1|2246210_2247122_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|2247347_2248865_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|2250096_2251059_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|2251147_2251396_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_047122782.1|2257953_2258397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|2258461_2258734_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|2258730_2259678_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|2259859_2261254_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|2261276_2261672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|2261668_2262928_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|2263049_2264105_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|2264107_2264767_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|2264782_2267440_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|2267517_2268720_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|2268716_2269229_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|2269351_2269789_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2270065_2271016_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|2271114_2272065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	2277788	2347930	4107548	transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010929591.1|2277788_2278739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2279190_2280192_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2280364_2281222_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2281218_2282481_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2282581_2282956_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2283028_2284216_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2284300_2285071_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2285184_2285949_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2285899_2287201_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2287197_2288004_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2289748_2290720_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2290876_2291389_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2291547_2292522_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2293522_2294317_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2294342_2295149_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2295259_2295850_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2295860_2297039_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2297141_2297516_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2297768_2299100_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2299166_2302397_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2303887_2304634_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2304718_2305180_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2305217_2306276_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2306238_2308068_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2308107_2308680_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2310104_2310926_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2311244_2312567_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2312926_2313562_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2313521_2314472_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2315342_2316215_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2316292_2317432_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2317790_2319047_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2319052_2319580_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2319584_2320403_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2320402_2321125_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2321146_2321461_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2321478_2322627_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2322657_2323533_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2323529_2324849_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2324921_2326118_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2326128_2327616_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2330210_2331110_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2331247_2332213_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2332311_2333262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2333483_2334434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2334532_2335483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2335479_2335782_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2335941_2336346_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2336338_2337565_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2337561_2338008_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2338077_2338860_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2338901_2340407_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2340692_2341526_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2342963_2343785_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2343803_2344658_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2344661_2345633_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2346317_2346494_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2346979_2347930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	2351033	2409578	4107548	transposase	uncultured_Mediterranean_phage(16.67%)	57	NA	NA
WP_010930153.1|2351033_2352050_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2354029_2355043_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2355129_2356035_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2356191_2356536_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2356693_2357152_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2357165_2359382_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2359378_2360440_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2360468_2361443_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2361394_2362213_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2362225_2362834_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2363008_2363404_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2363422_2364862_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2364890_2365238_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2365256_2366207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2366859_2367810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2367893_2369711_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2369784_2370432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2370444_2371374_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2371543_2372008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2372255_2372936_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2372984_2374676_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2374691_2375243_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2375239_2375611_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2375723_2376560_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2376570_2377095_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2377192_2377372_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2377501_2378476_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2378606_2378963_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2378952_2379828_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2379926_2380811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2380832_2382128_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2383076_2383727_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2383814_2385335_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2385592_2387458_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2388503_2389454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2389471_2389612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2390426_2390786_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2390773_2392210_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2392206_2392860_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930773.1|2394152_2395427_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2395423_2396374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162300163.1|2396391_2396646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2396540_2397515_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2397511_2397655_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2399276_2399939_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2399941_2400118_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2400114_2401053_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2401144_2402635_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2402720_2402873_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2402886_2403126_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2403221_2403965_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2403973_2404498_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2404596_2405520_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2405516_2406278_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2406293_2407379_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2407578_2408529_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2408627_2409578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	2419818	2479088	4107548	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_010930787.1|2419818_2420718_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2420736_2422041_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2422006_2423113_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2423200_2423437_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2423575_2424646_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2424649_2426005_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2426031_2427189_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2427194_2427833_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2427834_2429130_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2429179_2430466_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2430481_2430988_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2430984_2432133_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2432160_2432586_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2432908_2435791_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2435883_2436639_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2437404_2438754_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2438852_2439803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2439901_2440852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2440925_2441399_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2441424_2442633_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2442629_2443403_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2443402_2444026_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2444191_2444452_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2444755_2445337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2445403_2445658_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2445644_2448269_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2448340_2449159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2449155_2449761_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2449798_2450932_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2452647_2453022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2453119_2454394_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2454397_2455975_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2456881_2458237_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2458233_2459868_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2459860_2460691_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2460708_2461653_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2461705_2463280_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2463327_2463687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2463679_2464000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2464115_2465048_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2465150_2466107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2466256_2467594_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2467598_2468855_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2469050_2470097_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2470154_2470523_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2470653_2471526_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2471602_2472505_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2473561_2474779_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2476052_2477003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2477203_2478013_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2478137_2479088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	2492281	2557102	4107548	transposase,tRNA,protease	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2492281_2493232_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2493802_2494015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2494032_2494764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2494798_2495440_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2495432_2496101_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2498313_2499090_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2499111_2500269_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2500265_2500697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2500693_2501491_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2501510_2501912_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2501978_2502950_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2503015_2504239_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2504466_2505417_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2505540_2507994_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2508182_2509487_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2509591_2510245_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2510247_2511558_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2511736_2512315_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2512426_2512627_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2512972_2513539_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2513622_2513826_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2514132_2514453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2514494_2514776_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2514850_2516107_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2516489_2516819_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2518389_2519211_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2519210_2520350_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2520356_2521253_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2521267_2523175_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2523534_2526147_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2526199_2528500_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2528496_2529705_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2529966_2530341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2530337_2531288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2531386_2533381_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2533440_2534406_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2534395_2537257_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2537259_2537766_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2537870_2539079_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2539080_2540019_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2540180_2540654_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2540650_2541601_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2541711_2542152_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2542280_2543510_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2543548_2544370_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2544423_2545575_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2545666_2546155_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2548705_2551255_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2551325_2553899_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2554164_2554365_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2554396_2554558_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2554615_2554954_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2555102_2556053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2556151_2557102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	2736427	2856690	4107548	transposase,protease	Agrobacterium_phage(16.67%)	97	NA	NA
WP_010931070.1|2736427_2737378_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2737374_2738325_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2738641_2739247_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2739300_2740614_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2740688_2741159_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2741158_2741947_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2741957_2743610_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2743697_2744648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2745809_2746316_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2746312_2747077_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2747092_2747377_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2747441_2748431_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2748602_2749532_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2749503_2750190_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2750223_2750769_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2750813_2752079_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2752075_2752978_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2754159_2755104_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2755198_2756716_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2756757_2758386_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2758493_2759375_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2762487_2762862_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2762886_2763225_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2763268_2764903_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2764941_2766288_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2766395_2767817_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2767886_2768471_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2768573_2769524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2769658_2770765_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2770775_2771873_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2772017_2773223_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2773229_2773751_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2773747_2774230_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2774235_2774487_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2774467_2774953_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2775088_2778550_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2778567_2779452_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2779461_2779893_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2780139_2780643_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2780720_2782121_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2782195_2783071_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2783067_2784075_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2784542_2784848_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2784938_2785529_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2785719_2786736_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2786927_2789264_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2789346_2789781_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2789879_2790830_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2790928_2791879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2791875_2792670_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2792701_2793406_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2793480_2794281_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2794277_2794685_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2794681_2795323_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2795315_2797316_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2798576_2799908_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2799904_2800855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2802561_2802828_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2803535_2803874_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2808427_2809030_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2809126_2810416_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2810473_2811205_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2811201_2812005_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2812001_2813090_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2813086_2814016_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2814164_2815310_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2815331_2816282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2816299_2816458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2816612_2820434_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2820590_2821259_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2821263_2822937_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2822955_2824275_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2824279_2826595_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2826650_2828819_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2828815_2833996_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2834094_2834409_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2834636_2834882_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2834976_2835495_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2835594_2836800_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2836915_2838313_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2838429_2839008_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2839080_2840472_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2840639_2841590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2841870_2842491_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2842487_2842901_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2842897_2843941_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2843996_2844185_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2844194_2844959_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2845049_2845706_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2845797_2846556_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2846581_2848183_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2848383_2849388_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2849488_2849752_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2849869_2850646_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2851236_2852187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2854570_2855683_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2855739_2856690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	2887075	2930766	4107548	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2887075_2888026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2888043_2888193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2888146_2889043_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2891320_2893546_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2893710_2894799_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2894755_2895409_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2895456_2896254_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2896785_2897736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2897816_2898965_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2899021_2899972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2900070_2900376_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2900404_2900839_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2900840_2902085_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2902081_2902792_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2902806_2903718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2904080_2904485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2904481_2904940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2904946_2905855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2905851_2906718_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2906704_2907532_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2907542_2908670_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2909747_2910986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2911027_2912290_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2912296_2913049_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2913100_2913286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2913561_2914026_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2914057_2914717_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2914861_2916970_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2916966_2917917_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2918020_2918641_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2918744_2919485_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2920619_2921744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2921789_2922158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2922399_2923350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2924385_2924928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2925125_2925296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2925313_2926264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2926260_2927169_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2927295_2928132_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2928644_2929754_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2929815_2930766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	3164278	3215740	4107548	transposase	Acidithiobacillus_phage(50.0%)	41	NA	NA
WP_005012808.1|3164278_3165229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3165673_3165985_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3165984_3166515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3166471_3166660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3166677_3167628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3167726_3168677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3168966_3169431_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3169445_3170951_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3171204_3172812_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3172867_3173773_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3174213_3175164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3175304_3176522_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3176515_3177127_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3177760_3178738_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3178881_3179628_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3179649_3180096_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3180883_3183115_+	BCCT family transporter	NA	NA	NA	NA	NA
WP_003813993.1|3183137_3183938_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3184219_3185452_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3185562_3186552_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3186582_3187971_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3189569_3190553_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3190749_3191766_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|3191962_3192787_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|3192864_3193788_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|3193958_3195110_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|3195113_3196145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930023.1|3196273_3197245_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|3197269_3199354_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|3199420_3200413_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|3200521_3201856_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|3201881_3203894_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|3203890_3205939_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|3206042_3206690_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|3206830_3207325_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|3207368_3208040_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|3208054_3209548_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|3209544_3212658_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|3212670_3213777_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|3213900_3214569_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3214789_3215740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	3256224	3325227	4107548	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3256224_3257175_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3257171_3258191_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3258200_3260909_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3261056_3261713_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3261811_3262762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3262909_3263803_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3264002_3265697_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3265731_3266658_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3266726_3267824_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3267842_3268706_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3268717_3269500_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_077107798.1|3269496_3270615_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3270611_3272144_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3272184_3273192_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3273336_3274059_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3274074_3275097_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3275413_3276148_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3276232_3277978_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3277974_3278727_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3278771_3279728_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3279816_3280383_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3280390_3281251_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3281280_3282009_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3282040_3282724_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3283561_3284476_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3284540_3285449_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3285539_3286964_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3286965_3288288_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3288284_3290423_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3290500_3295621_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3295721_3296030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3296099_3296657_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3296672_3298154_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3298208_3300062_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3300324_3301662_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3301696_3303694_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3303711_3305760_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3305890_3306757_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3307025_3307991_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3308105_3309254_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3309678_3309990_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3310023_3310284_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3310433_3311567_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3311637_3312774_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3312939_3313734_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3313796_3314240_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3314355_3315306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3315428_3315836_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3315908_3318104_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3318325_3319276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3319235_3319760_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3319891_3320863_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3320982_3323427_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3323442_3324033_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3324276_3325227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	3340673	3440786	4107548	tail,transposase,terminase,tRNA,protease	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3340673_3341624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3342355_3342733_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3342717_3343419_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3343562_3344255_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3344254_3345358_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3345467_3347840_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3347836_3349396_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3349420_3350218_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3350249_3351395_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3351499_3352942_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3352944_3354174_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3356311_3357262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3358391_3358949_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3358924_3359275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3359443_3360238_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3360234_3361284_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3361283_3361973_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3362059_3362557_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3362588_3363905_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3363921_3364896_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3364932_3365391_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3365390_3366071_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3366073_3366502_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3366554_3368285_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3368350_3368923_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3368903_3369590_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3369945_3370617_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3370945_3371167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3371166_3371448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3371444_3371960_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3371959_3372511_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3372489_3372732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3372736_3373549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3373548_3373812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3373852_3374050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3374030_3374447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3374451_3378408_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3378400_3378790_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3378786_3379320_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3379387_3379747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3379756_3382369_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3382394_3382685_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3382702_3383032_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3383041_3383560_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3383814_3384315_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3384322_3384745_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3384741_3385140_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3385136_3385532_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3385531_3385720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3385733_3386216_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3386278_3386530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3387204_3388155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3388583_3389186_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3389308_3389551_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3389556_3390612_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3390640_3392059_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3392061_3393339_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3393325_3393811_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3394450_3395401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3395418_3395640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3395657_3396347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3396339_3396591_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3397145_3397757_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3397828_3398035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3398286_3399237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3399335_3400409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3400576_3401371_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3401410_3401935_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3401927_3403670_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3403879_3404638_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3404640_3405348_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3405364_3406246_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3406256_3407015_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3406983_3407739_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3407808_3409227_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3409248_3409899_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3410032_3410368_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3410456_3411407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3411483_3413304_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3413308_3414382_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3414504_3415473_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3415546_3416458_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3416476_3417049_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3417129_3417678_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3417677_3419267_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3419336_3419576_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3419616_3420642_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3420707_3421889_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3421985_3422438_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3422447_3423788_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3424104_3425142_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3425523_3425883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3425966_3426908_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3426982_3427933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3428226_3429321_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3429411_3430284_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3430305_3431145_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3431220_3432738_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3432834_3433935_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3433951_3434374_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3434396_3434609_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3434655_3435576_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3435758_3436508_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3436510_3436840_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3437127_3438480_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3438491_3438875_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3438936_3439737_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3439835_3440786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	3601453	3656427	4107548	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3601453_3602404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3602520_3603588_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3603663_3606792_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3607299_3608265_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3608267_3608939_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3609095_3610055_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3610062_3610725_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3610721_3611672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3611793_3613047_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3613024_3613987_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3614118_3614613_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3614612_3615845_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3616590_3616872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3616858_3617845_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3617988_3618393_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3618534_3621921_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3621951_3623415_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019247315.1|3623423_3625052_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3625137_3625797_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3625826_3626267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3626777_3626981_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3627156_3628062_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3628160_3629111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3629209_3630160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3631941_3633135_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3633200_3634229_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3634255_3635428_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3635553_3636531_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3636541_3637513_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3637579_3638365_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3638357_3639590_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3639785_3640541_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3640651_3641170_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3642958_3644359_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3644458_3644803_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3644891_3645362_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3645772_3646171_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3646302_3647253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3649697_3650432_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3650841_3651021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3651211_3652525_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3652540_3654052_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3654048_3655254_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3655449_3656427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	3746240	3800434	4107548	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	52	NA	NA
WP_005013747.1|3746240_3747191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3747313_3748042_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3748138_3749317_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3749313_3750147_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3750183_3750924_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3751043_3752219_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3752215_3753169_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3753182_3753584_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3753576_3754182_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3754269_3754434_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3754550_3755399_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3755395_3756049_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3756065_3757349_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3757588_3759214_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3759307_3759709_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3759733_3760168_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3760169_3761819_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3761859_3763029_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3763031_3763895_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3767258_3767963_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3767956_3768751_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3768747_3769713_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3769716_3770637_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3770733_3771897_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3772119_3773010_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3773013_3773517_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3773559_3774558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3774554_3775505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3775593_3775881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3776072_3777023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3777082_3777643_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3779145_3780027_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3780140_3781343_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3781471_3783331_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3783408_3784218_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3784288_3785290_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3785321_3786182_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3786381_3787386_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3787382_3788969_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3788977_3789904_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3789926_3790553_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3790651_3791602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3791598_3792735_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3792788_3793565_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3793589_3794048_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3794187_3794829_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3794893_3796276_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|3796301_3797150_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3797308_3797920_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929718.1|3799044_3799206_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077069015.1|3799281_3799497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3799483_3800434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	3811050	3871939	4107548	transposase,tRNA,protease	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_010929591.1|3811050_3812001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3812731_3813712_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3813725_3814850_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3814857_3816612_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3816718_3817618_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3817682_3818666_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3818801_3819782_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3819798_3821190_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3821341_3821878_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3821808_3823194_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3823336_3823975_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3824061_3825951_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3825947_3826889_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3826994_3828044_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3828296_3828998_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3828994_3829693_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3829693_3831049_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3831045_3831537_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3831555_3832512_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3833922_3836025_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3836195_3837239_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3837282_3838026_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3839047_3839458_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3840407_3841205_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3841303_3842254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3842250_3843201_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3843287_3844238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3844352_3845354_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3845444_3846011_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3846329_3848243_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3848284_3849715_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3849827_3851240_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3851256_3851952_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3852170_3853121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3853145_3854045_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3854199_3854748_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3854786_3855506_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|3855676_3858520_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3859113_3861909_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3862366_3863299_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3863410_3864760_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3864791_3865517_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_033446325.1|3865567_3866350_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3866548_3867235_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3867234_3867879_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3867935_3868211_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3868236_3868533_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3868578_3869358_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3869363_3870404_+	cyclase	NA	NA	NA	NA	NA
WP_010929699.1|3870508_3870832_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_077069089.1|3870988_3871939_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP017885	Bordetella pertussis strain J081 chromosome, complete genome	4107548	4006616	4071528	4107548	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006616_4007102_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007190_4007328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007320_4008301_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008567_4009377_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009416_4010097_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4010090_4010549_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010560_4010923_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011005_4011689_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011744_4012053_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4012071_4012386_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012382_4014857_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014864_4016256_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016252_4016438_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016416_4017118_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017114_4017936_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017916_4019041_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019033_4020053_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020258_4021149_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021393_4022185_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022267_4022642_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022619_4024029_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024021_4025404_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025738_4027343_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027420_4028392_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028402_4029329_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029719_4030670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030839_4032066_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032265_4033132_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033124_4034087_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034187_4035138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035236_4036187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036285_4037236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037232_4038726_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038722_4041830_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041826_4044895_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044891_4046142_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046322_4047075_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047116_4047761_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047769_4048750_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048849_4049593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049675_4050023_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050120_4050963_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051007_4051895_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051921_4052110_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052207_4053665_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053651_4055178_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055196_4055664_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055663_4056686_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056806_4057547_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057601_4058702_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058703_4059894_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060013_4061030_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061348_4062020_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062016_4062925_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063136_4063784_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067644_4068712_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068722_4069532_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069621_4070395_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070395_4070560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070577_4071528_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
