The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	27282	70036	4105355	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	77634	136108	4105355	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_077071156.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	164892	225403	4105355	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	233335	286923	4105355	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	390856	448365	4105355	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	589388	650579	4105355	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589388_590339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590814_591705_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591701_592523_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592722_593214_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593232_594306_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594352_595456_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595531_596152_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596172_596682_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596736_596988_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597051_598185_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598192_598579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598575_601095_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601523_601862_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601858_602365_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602426_603227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603337_604279_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604372_605908_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607587_609438_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609441_610275_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610274_611216_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611467_612439_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612580_614869_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615175_616084_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616138_617104_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617178_618840_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618911_619622_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619588_619753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619770_620721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621419_621803_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621860_622463_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622480_622882_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622997_623909_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623905_624487_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625281_626016_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626056_627106_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627253_627832_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628218_629196_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629289_633684_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633884_634733_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634891_635704_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635759_636710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636808_637609_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637670_638054_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638065_639418_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639705_640035_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640037_640787_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640969_641890_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641936_642149_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642171_642594_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642610_643711_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643807_645325_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645400_646240_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646261_647134_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647224_648319_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648612_649563_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649637_650579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	655903	702094	4105355	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655903_656929_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656969_657209_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657278_658868_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658867_659416_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659496_660069_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660087_660999_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661072_662041_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662163_663237_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663241_665062_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665138_666089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666177_666513_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666646_667297_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667318_668737_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668806_669562_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669530_670289_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670299_671181_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671197_671905_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671907_672666_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672875_674618_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674610_675135_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675174_675969_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676136_677210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677308_678259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678510_678717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678788_679400_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679954_680206_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680198_680888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680905_681127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681144_682095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682734_683220_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683206_684484_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684486_685905_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685933_686989_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686994_687237_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687359_687962_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688390_689341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690015_690267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690329_690812_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690825_691014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|691013_691409_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691405_691804_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691800_692223_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692230_692731_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692985_693504_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693513_693843_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693860_694151_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694176_696789_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696798_697158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697225_697759_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697755_698145_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698137_702094_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	708260	762190	4105355	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708260_709991_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710043_710472_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710474_711155_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711154_711613_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711649_712624_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712640_713957_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713988_714486_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714572_715262_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715261_716311_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716307_717102_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717270_717621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717596_718154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719283_720234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722371_723601_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723603_725046_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725150_726296_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726327_727125_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727149_728709_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728705_731078_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731187_732291_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732290_732983_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733126_733828_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733812_734190_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734921_735872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736031_736904_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737244_737463_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737502_738882_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738923_740321_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740360_742013_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742016_742901_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742900_743842_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743920_745540_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745706_746522_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746589_747159_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747159_748110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748764_749862_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749895_751161_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751318_752269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752512_753103_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753118_755563_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755682_756654_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756785_757310_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757269_758220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758441_760637_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760709_761117_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761239_762190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	884779	952755	4105355	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884779_885796_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885992_886976_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888574_889963_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889993_890983_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891093_892326_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892607_893408_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893430_895662_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896449_896896_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896917_897664_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897807_898785_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899418_900030_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900023_901241_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901381_902332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902328_903048_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903168_905328_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905418_905688_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905776_905983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905981_906509_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906527_907307_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907474_908491_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908563_909055_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909065_910781_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911944_912895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912891_914724_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915122_915782_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916309_916990_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917271_917988_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|918002_919304_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921448_924337_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924560_925913_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925941_926463_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926459_927914_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927948_928197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928302_929178_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929203_930259_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930271_931063_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931095_932466_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933642_934593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934645_934867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935026_935239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935358_936477_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936573_936789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936982_937234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937346_938297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938293_938677_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938731_940546_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940695_941523_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941568_942549_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942545_942758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942754_943936_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944099_944834_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944835_947448_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947583_949497_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950112_950523_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950620_951706_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951804_952755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	996284	1068801	4105355	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996284_997235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997339_998389_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998526_999543_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001051_1001624_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001683_1002415_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002466_1003384_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004191_1007371_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007367_1008750_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008819_1009071_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009216_1009831_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1010017_1012078_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012207_1013059_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013055_1013682_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013678_1015433_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015725_1018431_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018443_1020105_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020117_1021908_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022129_1023305_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023347_1024298_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024396_1025137_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025331_1027368_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027385_1028396_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028513_1029707_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029736_1030510_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030506_1031697_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031722_1032661_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032657_1035006_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035160_1035802_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037131_1037284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037315_1037864_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037882_1038368_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038545_1039484_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039486_1039804_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039849_1040794_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042474_1043125_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043178_1043514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043510_1044371_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044387_1044669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044742_1045006_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045249_1046200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046498_1047236_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047671_1047995_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048029_1048590_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048710_1049586_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049598_1050546_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050647_1050941_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050967_1053025_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053039_1053540_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053613_1055320_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056183_1057236_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057288_1057678_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057686_1058319_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058418_1059435_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060265_1061273_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061269_1062913_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062909_1063797_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063937_1064411_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064400_1065423_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065419_1066847_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067784_1068801_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	1072554	1134630	4105355	holin,tRNA,transposase	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1072554_1073691_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073687_1074761_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074918_1076355_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076445_1077087_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077422_1078439_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080481_1081432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082634_1084056_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084319_1085036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085120_1085438_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085478_1085892_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085893_1086253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086295_1087840_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087923_1088754_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088788_1089943_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089985_1090858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090974_1093263_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094469_1094934_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094960_1095911_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095928_1096066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096278_1097055_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097099_1097957_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097978_1098995_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099129_1100170_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100364_1102446_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102681_1104175_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104405_1105200_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105420_1106779_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106775_1107618_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107636_1109523_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109464_1109716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109760_1110393_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110411_1111014_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111165_1112116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112696_1113404_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113762_1114749_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114888_1115902_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115898_1116849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116866_1117007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116961_1117420_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117456_1118770_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118787_1119159_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119155_1120619_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120759_1121488_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121469_1124319_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124531_1125482_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125649_1126474_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126473_1127352_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128256_1129372_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129400_1130195_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130191_1132057_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132135_1132768_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132764_1133067_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133109_1134630_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	1152200	1218719	4105355	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1152200_1153997_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153996_1154965_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155034_1155880_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155947_1156502_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156548_1157499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157597_1158230_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158394_1160677_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160831_1163528_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163653_1164142_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166552_1169423_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169468_1170683_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170912_1172340_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172437_1173529_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173541_1174300_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174387_1175290_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175286_1176237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176366_1177350_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177404_1178127_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179605_1180961_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181041_1183417_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183581_1185657_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185718_1186513_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186620_1187583_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187570_1188326_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188433_1190071_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190138_1190876_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190978_1191554_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191726_1192263_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192295_1192610_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192625_1193471_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193509_1194889_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194966_1195848_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195946_1196897_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196893_1197304_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197411_1198266_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198258_1199221_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199266_1200391_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200496_1201375_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201499_1202279_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202432_1203854_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204288_1205986_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206212_1207154_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207480_1208227_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208234_1209161_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209282_1210200_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210239_1211193_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211217_1211796_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213469_1214078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214155_1214509_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214592_1215582_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1215578_1215767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215784_1216735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216821_1217772_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217768_1218719_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	1269647	1326857	4105355	transposase	Klosneuvirus(16.67%)	50	NA	NA
WP_010931070.1|1269647_1270598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274344_1274956_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275178_1276639_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276735_1278328_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278681_1278939_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278940_1280281_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280376_1281066_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281078_1282509_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284233_1285055_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285065_1286637_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286665_1287643_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287669_1288473_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288469_1289264_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289271_1290507_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290520_1290934_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291683_1292634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293255_1294983_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295094_1296453_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296509_1296728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296745_1297696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297736_1298807_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298829_1299708_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299879_1300851_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1301013_1301856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302017_1302698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302691_1303861_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303857_1304889_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304956_1306174_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306208_1307741_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307821_1308445_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308475_1309087_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309122_1309593_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248146.1|1309767_1310016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1310023_1311028_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311064_1312579_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312582_1313542_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313570_1314374_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314375_1316010_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316093_1317155_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317353_1317623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317626_1318151_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318566_1319517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319513_1320548_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320656_1321295_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321589_1321817_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321939_1322653_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322897_1323848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323987_1324233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324347_1325796_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325906_1326857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	1417090	1469243	4105355	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1417090_1418041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418058_1418211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418207_1418561_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418573_1418936_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418977_1419403_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419605_1420862_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421060_1422041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422190_1423432_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423530_1424481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424489_1425185_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1428006_1428606_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428616_1430782_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430805_1432590_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432589_1432679_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433373_1433646_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433645_1435712_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435708_1436659_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436757_1437708_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437823_1438156_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438152_1438839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438825_1439785_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439817_1442187_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442186_1442819_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442920_1444261_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444307_1445663_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445953_1446190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446377_1446695_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446967_1447483_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447753_1448509_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448847_1449054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449061_1449721_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1450015_1452220_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452330_1453554_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453676_1454651_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454718_1455912_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455926_1456727_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456723_1458580_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458576_1459182_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459200_1460586_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461311_1462538_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462626_1463409_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463507_1464458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464484_1465258_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465269_1466511_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468292_1469243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	1513168	1573081	4105355	tRNA,transposase	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1513168_1513657_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513774_1514353_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514458_1514827_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514925_1515876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515882_1516995_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517681_1518884_+	MFS transporter	NA	NA	NA	NA	NA
WP_005013747.1|1519062_1520013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930420.1|1520136_1522797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522809_1526214_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526881_1529107_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529153_1529480_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529530_1530139_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530237_1531188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531257_1532022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532018_1532555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532721_1533573_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533632_1534259_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534255_1535206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535304_1536417_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536406_1537408_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537513_1539025_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539021_1540326_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540437_1540998_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541265_1541820_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542275_1542491_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542745_1545343_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545339_1546527_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547186_1547801_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547889_1549011_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549028_1549934_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550826_1551777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551958_1552711_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552779_1553439_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553435_1554164_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554176_1556456_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556480_1556684_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556725_1557358_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557493_1558411_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558407_1559121_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559358_1560129_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560133_1560733_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560977_1562468_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562526_1562811_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563376_1564303_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564439_1565180_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565346_1566723_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566904_1567810_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569461_1571264_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571381_1572032_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572130_1573081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	1618253	1673844	4105355	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618253_1619204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619262_1620036_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620028_1621585_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621581_1622532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623858_1624461_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624700_1625402_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625395_1626178_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626362_1627313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627411_1628149_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628338_1629097_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629143_1630133_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630310_1631279_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632818_1633787_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633795_1634737_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635210_1636221_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636211_1637726_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637722_1639069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639071_1640106_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640155_1641781_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642333_1643284_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643388_1644336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644389_1646204_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646196_1646871_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1647000_1650075_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650088_1650388_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650702_1651326_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651569_1652439_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652416_1653361_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653446_1654373_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654485_1655265_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655255_1656452_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656482_1657433_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657654_1658344_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658408_1659164_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659215_1660208_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660217_1661171_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661286_1662249_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663650_1664079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664075_1665026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665319_1666042_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666480_1667668_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667671_1668022_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669771_1670743_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670756_1671470_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671474_1672392_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672498_1672795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672893_1673844_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	1831611	1890881	4105355	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831611_1832562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832686_1833496_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833696_1834647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835920_1837138_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838194_1839097_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839173_1840046_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840176_1840545_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840602_1841649_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841844_1843101_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843105_1844443_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844592_1845549_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845651_1846584_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846699_1847020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1847012_1847372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847419_1848994_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849046_1849991_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850008_1850839_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850831_1852466_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852462_1853818_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854724_1856302_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856305_1857580_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857677_1858052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859767_1860901_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860938_1861544_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861540_1862359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862430_1865055_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865041_1865296_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865362_1865944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866247_1866508_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866673_1867297_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867296_1868070_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868066_1869275_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869300_1869774_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869847_1870798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870896_1871847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871945_1873295_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874060_1874816_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874908_1877791_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878113_1878539_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878566_1879715_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879711_1880218_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880233_1881520_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881569_1882865_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882866_1883505_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883510_1884668_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884694_1886050_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886053_1887124_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887262_1887499_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887586_1888693_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888658_1889963_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889981_1890881_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	1901121	1945444	4105355	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901121_1902072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902170_1903121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903320_1904406_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904421_1905183_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905179_1906103_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906201_1906726_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906734_1907478_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907573_1907813_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907826_1907979_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908064_1909555_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909646_1910585_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910581_1910758_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910760_1911423_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913044_1913188_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913184_1914159_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914053_1914308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914325_1915276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915272_1916547_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916650_1917844_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917840_1918494_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918490_1919927_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919914_1920274_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921088_1921229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921246_1922197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923242_1925108_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925365_1926886_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926973_1927624_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928572_1929868_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929889_1930774_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930872_1931748_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931737_1932094_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932224_1933199_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933328_1933508_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933605_1934130_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934140_1934977_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935089_1935461_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935457_1936009_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936024_1937716_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937764_1938445_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938692_1939157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939326_1940256_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940268_1940916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940989_1942807_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942890_1943841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944493_1945444_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	1975223	2039592	4105355	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975223_1976174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976395_1977346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977444_1978410_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978547_1979447_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982041_1983529_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983539_1984736_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984808_1986128_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986124_1987000_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987030_1988179_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988196_1988511_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988532_1989255_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989254_1990073_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990077_1990605_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990610_1991867_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992225_1993365_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993442_1994315_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995185_1996136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996095_1996731_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997090_1998413_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998731_1999553_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000977_2001550_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001589_2003419_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003381_2004440_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004477_2004939_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005023_2005770_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007260_2010491_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010557_2011889_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012141_2012516_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012618_2013797_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013807_2014398_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014508_2015315_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015340_2016135_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017135_2018110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018268_2018781_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018937_2019909_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021653_2022460_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022456_2023758_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023708_2024473_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024586_2025357_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025441_2026629_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026701_2027076_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027176_2028439_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028435_2029293_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029465_2030467_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030918_2031869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033432_2034584_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034952_2035189_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035252_2035420_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035533_2037429_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037592_2038543_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038641_2039592_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	2171121	2228400	4105355	tRNA,transposase	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2171121_2172072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172170_2174165_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174224_2175190_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175179_2178041_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178043_2178550_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178654_2179863_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179864_2180803_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180964_2181438_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181434_2182385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182495_2182936_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183064_2184294_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184332_2185154_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185207_2186359_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186450_2186939_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189489_2192039_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192109_2194683_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194948_2195149_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195180_2195342_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195399_2195738_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195886_2196837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197611_2198280_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198261_2200217_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200459_2201209_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201221_2202085_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202088_2203504_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203637_2204366_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204504_2204705_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204880_2205279_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205302_2206703_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206821_2207574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207862_2208540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208566_2209346_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209342_2210227_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210244_2211024_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2211008_2211767_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211904_2212540_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212807_2213824_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213921_2214962_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215096_2216389_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217748_2218132_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218149_2218737_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218774_2219725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219823_2220384_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220380_2220926_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2221121_2222150_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222190_2223531_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223639_2224644_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224750_2227351_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2227449_2228400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	2268560	2332138	4105355	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_005012067.1|2268560_2269511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2269609_2270560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2270861_2271338_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2271961_2273599_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2273629_2274943_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2275076_2275394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2275494_2276817_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2276813_2277764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2278293_2279316_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2279344_2280175_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2280191_2281889_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2281953_2283030_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2283189_2284053_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2284083_2284653_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2284669_2285521_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2286578_2287460_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2287534_2288524_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2288586_2289537_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2289599_2290457_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2290516_2291005_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2292577_2293768_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2293764_2295351_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2295369_2296437_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2296541_2298086_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2298505_2300080_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2300196_2301204_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2301200_2302040_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2302044_2303682_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2303678_2304629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2304646_2304790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2304771_2306046_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2306075_2306366_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2306438_2307452_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2307471_2308734_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2308736_2309660_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2309656_2311150_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2311160_2312093_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2312274_2313600_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2313634_2314990_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2315050_2316571_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2316725_2317457_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2317554_2318865_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2318880_2319792_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2319782_2320376_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2320437_2320824_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2320835_2321306_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2321317_2321941_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2321961_2324709_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2331187_2332138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	2477079	2535323	4105355	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2477079_2478030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478509_2479166_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479180_2480848_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480850_2481480_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481691_2482786_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482930_2483743_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2483746_2485330_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2485500_2486631_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486817_2487894_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487975_2488626_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488640_2490044_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490327_2491146_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2491142_2491847_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492746_2493862_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493895_2494270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494292_2495450_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495462_2495696_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496330_2499300_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499314_2499524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499675_2500305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2500301_2502359_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502415_2503096_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503092_2503653_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503659_2504757_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504909_2505503_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505499_2506792_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506805_2507348_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507357_2508194_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508227_2509289_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509330_2510383_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510398_2510701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510842_2511793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511810_2511975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511971_2513666_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513662_2514748_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514795_2515695_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515705_2516350_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517371_2520614_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520624_2521779_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2522005_2522968_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523066_2524017_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524115_2525066_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525075_2525765_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525824_2526262_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526307_2527201_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527248_2528421_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528417_2529572_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2529768_2530119_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530108_2530543_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530559_2531510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531657_2532125_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532105_2533263_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533328_2534255_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534372_2535323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	2577601	2644101	4105355	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577601_2578552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578921_2579494_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579496_2580507_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580499_2581000_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2581010_2581352_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581420_2582155_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582171_2582441_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582463_2583252_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583298_2584315_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584531_2585974_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586152_2587772_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_077071158.1|2587892_2589713_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	67.4	5.6e-07
WP_010930330.1|2589791_2591324_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591357_2593004_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593073_2594096_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594113_2595247_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595249_2595939_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595938_2596724_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596767_2597532_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597570_2598992_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599057_2599762_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599809_2600229_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600241_2600649_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600832_2601543_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601669_2601960_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601977_2602460_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606965_2608120_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608425_2609442_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609688_2610477_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610543_2611224_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611220_2611991_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612089_2613040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613095_2614013_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614023_2615202_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615221_2616217_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617805_2618414_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618401_2619442_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619459_2620422_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620418_2621612_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621608_2622406_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622431_2623418_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623436_2625476_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625677_2626358_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626371_2627283_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627279_2627858_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627996_2628902_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628909_2632329_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632316_2634917_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635872_2636505_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636898_2637657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637653_2638856_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639043_2639994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640901_2642047_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642033_2642789_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642905_2643085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643150_2644101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	2672216	2709628	4105355	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672216_2673167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673265_2674216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674308_2674848_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674954_2675299_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675356_2676805_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676992_2677328_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678955_2680134_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680216_2680717_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680826_2681528_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2681539_2682004_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2682018_2682294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682290_2683067_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683095_2683923_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684048_2684519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684645_2685539_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685586_2686768_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686780_2687596_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2687729_2688257_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688253_2688751_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688898_2689276_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689497_2690448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690546_2691158_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691392_2692520_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692630_2693719_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693771_2694623_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694642_2695524_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695700_2697014_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697224_2698058_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698054_2698636_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698989_2699940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699955_2701071_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077071159.1|2701173_2702100_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702099_2703338_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703334_2704102_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704102_2704804_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704885_2705332_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2706221_2706860_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707628_2708579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708677_2709628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	2808755	2863272	4105355	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808755_2809706_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810034_2810640_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810693_2812007_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812081_2812552_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812551_2813340_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813350_2815003_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815090_2816041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817202_2817709_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817705_2818470_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818485_2818770_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818834_2819824_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819995_2820925_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820896_2821583_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821616_2822162_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822206_2823472_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823468_2824371_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825552_2826497_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826591_2828109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828150_2829779_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829886_2830768_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833880_2834255_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834279_2834618_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834661_2836296_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836334_2837681_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837788_2839210_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839279_2839864_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839966_2840917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841051_2842158_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842168_2843266_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843410_2844616_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844622_2845144_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845140_2845623_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845628_2845880_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845860_2846346_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846481_2849943_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849960_2850845_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850854_2851286_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851532_2852036_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852113_2853514_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853588_2854464_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854460_2855468_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855935_2856241_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856331_2856922_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857112_2858129_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858320_2860657_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860739_2861174_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861272_2862223_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862321_2863272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	2871297	2928083	4105355	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871297_2872248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873954_2874221_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874928_2875267_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879820_2880423_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880519_2881809_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881866_2882598_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882594_2883398_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883394_2884483_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884479_2885409_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885557_2886703_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886724_2887675_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887692_2887851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2888005_2891827_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891983_2892652_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892656_2894330_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894348_2895668_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895672_2897988_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898043_2900212_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900208_2905389_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905487_2905802_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906029_2906275_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906369_2906888_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906987_2908193_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908308_2909706_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909822_2910401_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910473_2911865_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912032_2912983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913263_2913884_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913880_2914294_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914290_2915334_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915389_2915578_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915587_2916352_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916442_2917099_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917190_2917949_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917974_2919576_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919776_2920781_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920881_2921145_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921262_2922039_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922629_2923580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925963_2927076_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927132_2928083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	2958469	3002160	4105355	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958469_2959420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959437_2959587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959540_2960437_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962714_2964940_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965104_2966193_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966149_2966803_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966850_2967648_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968179_2969130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969210_2970359_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970415_2971366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971464_2971770_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971798_2972233_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972234_2973479_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973475_2974186_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974200_2975112_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975474_2975879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975875_2976334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976340_2977249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977245_2978112_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978098_2978926_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978936_2980064_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981141_2982380_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982421_2983684_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983690_2984443_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984494_2984680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984955_2985420_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985451_2986111_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986255_2988364_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988360_2989311_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989414_2990035_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990138_2990879_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992013_2993138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993183_2993552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993793_2994744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995779_2996322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996519_2996690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996707_2997658_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997654_2998563_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998689_2999526_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000038_3001148_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001209_3002160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	3401967	3447039	4105355	tRNA,transposase	Staphylococcus_phage(20.0%)	37	NA	NA
WP_005012067.1|3401967_3402918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403684_3404779_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404771_3406106_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406059_3406743_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406768_3407932_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3407928_3408930_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408929_3409802_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409798_3410548_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410544_3411336_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411332_3412472_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412747_3413533_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413566_3414349_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414352_3414742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415881_3416745_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416780_3417869_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417865_3418816_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419169_3422148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423074_3423953_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425901_3426852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426848_3427316_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427358_3428129_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428149_3428950_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428960_3430370_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430464_3431250_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431489_3432506_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432613_3433006_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433143_3433824_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433828_3434800_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434895_3435846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3437350_3438052_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3438051_3439476_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3440545_3441886_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3442001_3443765_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443876_3444755_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444867_3445683_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445686_3445938_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446022_3447039_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	3464783	3517188	4105355	tRNA,transposase	Acinetobacter_phage(37.5%)	47	NA	NA
WP_010931363.1|3464783_3465800_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465895_3466606_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466602_3467592_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467687_3469319_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469321_3470059_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470214_3471087_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471436_3472576_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472572_3473232_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473303_3473936_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473965_3474484_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474494_3475604_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475650_3476505_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476506_3477409_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478631_3479582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481336_3482326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482501_3483290_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483286_3484318_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484336_3484900_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484955_3486476_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486739_3487444_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487451_3488180_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488294_3488669_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488711_3490001_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489997_3491167_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491163_3492003_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492062_3492998_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493010_3493961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494059_3495022_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495053_3495413_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495537_3496440_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496441_3498214_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498248_3499025_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500348_3501299_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3502150_3502471_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3502543_3503425_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3503541_3503784_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3503921_3504392_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3504404_3504944_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3504978_3506520_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3506618_3507524_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3507566_3508967_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3508976_3509399_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3509581_3510466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3510541_3511618_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3511924_3514027_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3514069_3516139_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3516237_3517188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP017883	Bordetella pertussis strain I385 chromosome, complete genome	4105355	3534306	3587058	4105355	tRNA,transposase	Catovirus(11.11%)	45	NA	NA
WP_010931400.1|3534306_3535257_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535597_3536548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536646_3537597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537893_3538391_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538433_3540209_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540216_3541083_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541089_3541824_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542993_3543788_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544077_3544668_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544701_3546030_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546104_3547250_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547361_3548360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548322_3548757_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550273_3551158_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551154_3552360_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552356_3553217_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553329_3555120_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555160_3555805_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3555826_3556135_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556300_3557587_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3559020_3559971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561922_3563137_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563242_3564232_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564228_3564837_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564849_3565479_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565475_3566096_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566127_3566919_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567770_3568226_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568244_3569171_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569224_3570511_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571441_3572314_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572310_3573261_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573359_3574310_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699695.1|3574414_3574645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247263.1|3574771_3575161_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3575177_3577559_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3577551_3578928_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3578943_3579939_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3579957_3580950_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3581190_3581751_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3581755_3582082_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3582118_3582931_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3582941_3584024_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3584110_3585385_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3586107_3587058_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
