assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002850275.3_ASM285027v3	NZ_CP025541	Klebsiella pneumoniae strain 2N3 chromosome, complete genome	1	901505-901590	1	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Orphan	AATAAAAACCATAAAAACCACAGT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|160aa|up_9|NZ_CP025541.3_890479_890959_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|283aa|up_8|NZ_CP025541.3_891210_892059_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|up_7|NZ_CP025541.3_892063_892441_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_6|NZ_CP025541.3_892443_893265_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_5|NZ_CP025541.3_893261_894251_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_4|NZ_CP025541.3_894256_895543_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|783aa|up_3|NZ_CP025541.3_895597_897946_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|276aa|up_2|NZ_CP025541.3_898189_899017_+	PRK09430, djlA, co-chaperone DjlA	NA|233aa|up_1|NZ_CP025541.3_899049_899748_-	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|542aa|up_0|NZ_CP025541.3_899737_901363_-	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|455aa|down_0|NZ_CP025541.3_901687_903052_+	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|180aa|down_1|NZ_CP025541.3_903231_903771_+	TIGR03124, citrate_citX, holo-ACP synthase CitX	NA|220aa|down_2|NZ_CP025541.3_903845_904505_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|down_3|NZ_CP025541.3_904517_907424_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|786aa|down_4|NZ_CP025541.3_907611_909969_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|down_5|NZ_CP025541.3_910144_910840_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_6|NZ_CP025541.3_910977_912480_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|570aa|down_7|NZ_CP025541.3_912490_914200_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|282aa|down_8|NZ_CP025541.3_914537_915383_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|256aa|down_9|NZ_CP025541.3_915511_916279_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
GCF_002850275.3_ASM285027v3	NZ_CP025541	Klebsiella pneumoniae strain 2N3 chromosome, complete genome	2	1769461-1769538	2	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Orphan	AAGGCGTCAGCCGCCACCCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA|71aa|down_7|NZ_CP025541.3_1776141_1776354_-,NA|87aa|down_8|NZ_CP025541.3_1776528_1776789_-	NA|362aa|up_9|NZ_CP025541.3_1753243_1754329_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|NZ_CP025541.3_1754862_1755294_+	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|896aa|up_7|NZ_CP025541.3_1755345_1758033_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|428aa|up_6|NZ_CP025541.3_1759585_1760869_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|406aa|up_5|NZ_CP025541.3_1761125_1762343_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|319aa|up_4|NZ_CP025541.3_1762339_1763296_+	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|242aa|up_3|NZ_CP025541.3_1763357_1764083_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|563aa|up_2|NZ_CP025541.3_1764225_1765914_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|509aa|up_1|NZ_CP025541.3_1765910_1767437_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|461aa|up_0|NZ_CP025541.3_1767535_1768918_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|159aa|down_0|NZ_CP025541.3_1769692_1770169_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_1|NZ_CP025541.3_1770239_1771529_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_2|NZ_CP025541.3_1771742_1772783_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|down_3|NZ_CP025541.3_1772779_1773937_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_4|NZ_CP025541.3_1773920_1774676_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|241aa|down_5|NZ_CP025541.3_1774668_1775391_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|241aa|down_6|NZ_CP025541.3_1775332_1776055_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|71aa|down_7|NZ_CP025541.3_1776141_1776354_-	NA	NA|87aa|down_8|NZ_CP025541.3_1776528_1776789_-	NA	NA|674aa|down_9|NZ_CP025541.3_1776765_1778787_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB
GCF_002850275.3_ASM285027v3	NZ_CP025541	Klebsiella pneumoniae strain 2N3 chromosome, complete genome	3	3092264-3093755	3,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC,TGGAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC	28,28,30,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	24,24,21,21	24	TypeI-E	DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA|372aa|up_0|NZ_CP025541.3_3090909_3092025_-,NA|60aa|down_8|NZ_CP025541.3_3102150_3102330_-	NA|77aa|up_9|NZ_CP025541.3_3083011_3083242_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NZ_CP025541.3_3083238_3083976_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NZ_CP025541.3_3084025_3084685_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NZ_CP025541.3_3084681_3085305_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|446aa|up_5|NZ_CP025541.3_3085388_3086726_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NZ_CP025541.3_3086739_3088524_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|251aa|up_3|NZ_CP025541.3_3088526_3089279_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NZ_CP025541.3_3089783_3090155_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NZ_CP025541.3_3090215_3090899_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NZ_CP025541.3_3090909_3092025_-	NA	cas2|96aa|down_0|NZ_CP025541.3_3093802_3094090_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NZ_CP025541.3_3094067_3094943_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|down_2|NZ_CP025541.3_3094942_3095659_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NZ_CP025541.3_3095671_3096706_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP025541.3_3096735_3097383_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NZ_CP025541.3_3097375_3097942_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP025541.3_3097953_3099477_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|down_7|NZ_CP025541.3_3099480_3102096_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|60aa|down_8|NZ_CP025541.3_3102150_3102330_-	NA	NA|357aa|down_9|NZ_CP025541.3_3103093_3104164_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
GCF_002850275.3_ASM285027v3	NZ_CP025541	Klebsiella pneumoniae strain 2N3 chromosome, complete genome	4	3102509-3102841	4,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	GAAACACCCCCACGCATGTGGGGAAGAC,GAAACACCCCCACGCATGTGGGGAAGAC,GAAACACCCCCACGCATGTGGGGAAGAC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	5,5,5	5	TypeI-E	DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA|372aa|up_9|NZ_CP025541.3_3090909_3092025_-,NA|60aa|up_0|NZ_CP025541.3_3102150_3102330_-,NA|79aa|down_3|NZ_CP025541.3_3107107_3107344_-	NA|372aa|up_9|NZ_CP025541.3_3090909_3092025_-	NA	cas2|96aa|up_8|NZ_CP025541.3_3093802_3094090_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_7|NZ_CP025541.3_3094067_3094943_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|239aa|up_6|NZ_CP025541.3_3094942_3095659_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|up_5|NZ_CP025541.3_3095671_3096706_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_4|NZ_CP025541.3_3096735_3097383_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_3|NZ_CP025541.3_3097375_3097942_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_2|NZ_CP025541.3_3097953_3099477_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|up_1|NZ_CP025541.3_3099480_3102096_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|60aa|up_0|NZ_CP025541.3_3102150_3102330_-	NA	NA|357aa|down_0|NZ_CP025541.3_3103093_3104164_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NZ_CP025541.3_3104156_3105926_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NZ_CP025541.3_3106000_3107089_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|79aa|down_3|NZ_CP025541.3_3107107_3107344_-	NA	NA|360aa|down_4|NZ_CP025541.3_3107391_3108471_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_5|NZ_CP025541.3_3108717_3110868_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|386aa|down_6|NZ_CP025541.3_3110910_3112068_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_7|NZ_CP025541.3_3112363_3113563_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_8|NZ_CP025541.3_3113679_3114114_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_9|NZ_CP025541.3_3114679_3115912_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM
GCF_002850275.3_ASM285027v3	NZ_CP025541	Klebsiella pneumoniae strain 2N3 chromosome, complete genome	5	4732857-4733142	4	PILER-CR	no		DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Orphan	CTGACCGATAAGCCGCGTTCTTTTGGTATAGCGTCGTGGACAGTCATTCATCCTT	55	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,cas3,RT,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA|75aa|down_4|NZ_CP025541.3_4737925_4738150_-	NA|102aa|up_9|NZ_CP025541.3_4726361_4726667_+	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]	NA|133aa|up_8|NZ_CP025541.3_4726669_4727068_+	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|99aa|up_7|NZ_CP025541.3_4727064_4727361_+	pfam13997, YqjK, YqjK-like protein	NA|131aa|up_6|NZ_CP025541.3_4727705_4728098_+	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|329aa|up_5|NZ_CP025541.3_4728178_4729165_+	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|123aa|up_4|NZ_CP025541.3_4729291_4729660_+	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|299aa|up_3|NZ_CP025541.3_4729701_4730598_-	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|234aa|up_2|NZ_CP025541.3_4730702_4731404_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|137aa|up_1|NZ_CP025541.3_4731669_4732080_-	COG3678, CpxP, P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]	NA|155aa|up_0|NZ_CP025541.3_4732385_4732850_+	pfam12869, tRNA_anti-like, tRNA_anti-like	NA|382aa|down_0|NZ_CP025541.3_4733609_4734755_-	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|297aa|down_1|NZ_CP025541.3_4734819_4735710_-	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|257aa|down_2|NZ_CP025541.3_4735736_4736507_-	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|444aa|down_3|NZ_CP025541.3_4736533_4737865_-	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|75aa|down_4|NZ_CP025541.3_4737925_4738150_-	NA	NA|524aa|down_5|NZ_CP025541.3_4738257_4739829_+	TIGR03248, galactar-dH20, galactarate dehydratase	NA|288aa|down_6|NZ_CP025541.3_4740041_4740905_-	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|703aa|down_7|NZ_CP025541.3_4740968_4743077_+	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|129aa|down_8|NZ_CP025541.3_4743034_4743421_+	PRK12497, PRK12497, YraN family protein	NA|197aa|down_9|NZ_CP025541.3_4743446_4744037_+	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional
