The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018867	Lactobacillus alimentarius DSM 20249 chromosome, complete genome	2333865	409268	414550	2333865		Staphylococcus_phage(50.0%)	6	NA	NA
WP_057739374.1|409268_409997_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	A0A2P9FI75	Pseudomonas_phage	28.3	5.0e-07
WP_101836857.1|410340_411372_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	34.6	3.7e-40
WP_057739375.1|411372_411972_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	36.8	7.9e-19
WP_057739376.1|411961_413164_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	47.2	8.3e-92
WP_057739377.1|413165_413636_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	44.3	1.2e-27
WP_083477952.1|413704_414550_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	25.0	3.9e-11
>prophage 2
NZ_CP018867	Lactobacillus alimentarius DSM 20249 chromosome, complete genome	2333865	804705	814706	2333865		Synechococcus_phage(33.33%)	10	NA	NA
WP_057740182.1|804705_806250_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.1	2.1e-71
WP_057740180.1|806227_806827_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	4.3e-25
WP_057740178.1|806823_807843_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FC27	Synechococcus_phage	41.6	2.0e-62
WP_057740176.1|807855_809262_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.7	5.4e-50
WP_057740174.1|809237_811457_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.5	7.2e-142
WP_057740172.1|811456_812131_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_057740170.1|812131_812377_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_057740167.1|812386_813094_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
WP_057740165.1|813097_814228_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_057740163.1|814220_814706_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	47.3	2.1e-22
>prophage 3
NZ_CP018867	Lactobacillus alimentarius DSM 20249 chromosome, complete genome	2333865	1782613	1790689	2333865	transposase	Enterococcus_phage(42.86%)	10	NA	NA
WP_101836852.1|1782613_1783513_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	34.2	3.0e-38
WP_101836851.1|1783509_1784043_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_057738117.1|1784120_1785146_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.5	9.4e-121
WP_057738115.1|1785161_1787327_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	59.7	1.2e-250
WP_057738113.1|1787313_1787688_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	35.8	1.2e-12
WP_057738111.1|1787693_1787924_-	glutaredoxin-like protein NrdH	NA	A0A249XUR7	Enterococcus_phage	47.3	4.7e-12
WP_057738109.1|1788201_1788828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057738107.1|1788886_1789093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738105.1|1789178_1789736_+	guanylate kinase	NA	A0A1W6JK60	Lactococcus_phage	28.6	2.2e-15
WP_057738102.1|1789948_1790689_+	C40 family peptidase	NA	A0A0A8WIF2	Clostridium_phage	41.3	1.3e-15
>prophage 4
NZ_CP018867	Lactobacillus alimentarius DSM 20249 chromosome, complete genome	2333865	2007149	2018083	2333865	transposase	Bacillus_phage(37.5%)	12	NA	NA
WP_057738972.1|2007149_2008667_+	AMP-binding protein	NA	Q75ZG1	Hepacivirus	29.9	4.6e-31
WP_057738971.1|2008663_2009641_+	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_057738970.1|2009767_2010181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738969.1|2010177_2010432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738968.1|2010504_2011011_+	helix-turn-helix transcriptional regulator	NA	X2CXD8	Lactobacillus_phage	36.1	2.9e-06
WP_057738967.1|2011243_2011972_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.4	6.4e-31
WP_057738966.1|2011971_2012781_-	ABC transporter permease subunit	NA	G3M9Y4	Bacillus_virus	26.7	1.3e-19
WP_057738965.1|2012784_2014287_-	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	23.9	4.9e-17
WP_101836855.1|2014483_2015383_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	34.2	3.9e-38
WP_101836880.1|2015379_2015913_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_057739023.1|2016005_2017394_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.8	1.1e-26
WP_057739022.1|2017390_2018083_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.2	2.9e-33
>prophage 1
NZ_CP018868	Lactobacillus alimentarius DSM 20249 plasmid pLDW-11, complete sequence	68058	10753	62342	68058	transposase	Staphylococcus_phage(35.71%)	50	NA	NA
WP_057738193.1|10753_12025_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.4	9.2e-41
WP_057738164.1|12307_13483_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	28.8	2.6e-26
WP_101836923.1|15476_16263_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_057738140.1|16250_16610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_056945266.1|16788_18039_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.5	7.9e-45
WP_057738138.1|18188_19247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738135.1|19343_19673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738133.1|19933_20689_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	98.8	4.3e-139
WP_014081540.1|20742_20994_-|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	95.2	6.0e-37
WP_101836925.1|21066_21186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738131.1|21203_21446_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_057738128.1|23049_24390_+	amino acid permease	NA	NA	NA	NA	NA
WP_057738125.1|24706_27421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101836926.1|27848_31016_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	22.9	1.5e-20
WP_057738192.1|31029_32652_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	50.5	4.3e-128
WP_057738191.1|32641_33874_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	32.7	6.6e-12
WP_083477899.1|33924_34104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738190.1|34020_34209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057738189.1|34305_35430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003679901.1|35433_35649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738188.1|35770_37906_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	47.0	2.0e-109
WP_003660151.1|37912_38323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738187.1|38337_39177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738186.1|39195_39585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738184.1|39596_41150_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_057738183.1|41165_41555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738182.1|41551_42037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738181.1|42037_42406_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_057738180.1|42392_43010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738179.1|43023_44178_-	CHAP domain-containing protein	NA	A0A1X9I9Q1	Staphylococcus_phage	38.1	1.3e-14
WP_057738178.1|44178_45597_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_057738176.1|45589_47605_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_016381866.1|47616_48276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738174.1|48244_48607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738172.1|48627_48963_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_020967646.1|48964_49579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082272744.1|49617_49926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057738170.1|50009_52070_-	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_057738168.1|52339_52549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041095822.1|52571_52850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010012556.1|52839_53520_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010620892.1|53516_53702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010014831.1|53748_54030_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_010014830.1|54256_55336_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_002825834.1|55942_56191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010010267.1|56204_57011_-	ParA family protein	NA	A0A1V0DZZ0	Clostridioides_phage	30.1	2.3e-21
WP_034528490.1|57107_57701_-	recombinase family protein	NA	M4QQC6	Vibrio_phage	42.4	4.6e-19
WP_057738166.1|58122_59328_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_057738193.1|59612_60884_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	31.4	9.2e-41
WP_057738164.1|61166_62342_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	28.8	2.6e-26
