assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002848745.1_ASM284874v1	NZ_CP023808	Enterococcus faecium strain Efaecium_ER04526.3A chromosome, complete genome	1	2375059-2375168	1	CRISPRCasFinder	no		cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	NA,NA	NA|720aa|up_9|NZ_CP023808.1_2363646_2365806_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP023808.1_2365855_2366821_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP023808.1_2366909_2368049_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP023808.1_2368357_2369071_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP023808.1_2369324_2370026_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP023808.1_2370259_2371792_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NZ_CP023808.1_2371982_2373185_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP023808.1_2373266_2373956_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP023808.1_2374061_2374430_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP023808.1_2374482_2374986_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP023808.1_2375395_2376085_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP023808.1_2376188_2376611_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP023808.1_2376953_2377622_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP023808.1_2377634_2378507_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP023808.1_2378597_2379617_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NZ_CP023808.1_2379789_2380677_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP023808.1_2380753_2381299_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP023808.1_2381399_2381570_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP023808.1_2381593_2381746_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP023808.1_2381907_2382552_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_002848745.1_ASM284874v1	NZ_CP023808	Enterococcus faecium strain Efaecium_ER04526.3A chromosome, complete genome	2	2786457-2786643	1	PILER-CR	no	RT	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	Unclear	TTTTCTCGTACATCTACCGTTC	22	3	3	2786479-2786513|2786536-2786564|2786587-2786621	NZ_CP023808.1_2786695-2786729|NZ_CP023808.1_2786644-2786672|NZ_CP023808.1_2786695-2786729	NA	3	3	Orphan	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	NA|258aa|up_8|NZ_CP023808.1_2779690_2780464_+,NA|105aa|up_6|NZ_CP023808.1_2781039_2781354_-,NA|116aa|up_4|NZ_CP023808.1_2783144_2783492_-,NA|101aa|up_3|NZ_CP023808.1_2783484_2783787_-,NA|204aa|up_1|NZ_CP023808.1_2785378_2785990_-,NA|63aa|up_0|NZ_CP023808.1_2786001_2786190_-,NA|73aa|down_0|NZ_CP023808.1_2788835_2789054_-,NA|109aa|down_2|NZ_CP023808.1_2791585_2791912_-	NA|82aa|up_9|NZ_CP023808.1_2779340_2779586_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|258aa|up_8|NZ_CP023808.1_2779690_2780464_+	NA	NA|83aa|up_7|NZ_CP023808.1_2780692_2780941_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|105aa|up_6|NZ_CP023808.1_2781039_2781354_-	NA	NA|425aa|up_5|NZ_CP023808.1_2781810_2783085_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|116aa|up_4|NZ_CP023808.1_2783144_2783492_-	NA	NA|101aa|up_3|NZ_CP023808.1_2783484_2783787_-	NA	NA|464aa|up_2|NZ_CP023808.1_2784002_2785394_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|204aa|up_1|NZ_CP023808.1_2785378_2785990_-	NA	NA|63aa|up_0|NZ_CP023808.1_2786001_2786190_-	NA	NA|73aa|down_0|NZ_CP023808.1_2788835_2789054_-	NA	NA|391aa|down_1|NZ_CP023808.1_2790082_2791255_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|109aa|down_2|NZ_CP023808.1_2791585_2791912_-	NA	NA|68aa|down_3|NZ_CP023808.1_2791919_2792123_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|217aa|down_4|NZ_CP023808.1_2792197_2792848_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|389aa|down_5|NZ_CP023808.1_2792902_2794069_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|131aa|down_6|NZ_CP023808.1_2794157_2794550_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|148aa|down_7|NZ_CP023808.1_2794565_2795009_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|156aa|down_8|NZ_CP023808.1_2795527_2795995_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|513aa|down_9|NZ_CP023808.1_2796114_2797653_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases
GCF_002848745.1_ASM284874v1	NZ_CP023809	Enterococcus faecium strain Efaecium_ER04526.3A plasmid pER04562.3A.1, complete sequence	1	430-557	1	CRISPRCasFinder	no	cas14j	cas14j,DEDDh	Unclear	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	TypeV	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	NA,NA|111aa|down_0|NZ_CP023809.1_1864_2197_+,NA|791aa|down_3|NZ_CP023809.1_5053_7426_+,NA|87aa|down_9|NZ_CP023809.1_13749_14010_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|111aa|down_0|NZ_CP023809.1_1864_2197_+	NA	NA|114aa|down_1|NZ_CP023809.1_2815_3157_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|417aa|down_2|NZ_CP023809.1_3393_4644_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|791aa|down_3|NZ_CP023809.1_5053_7426_+	NA	NA|487aa|down_4|NZ_CP023809.1_7486_8947_+	pfam13155, Toprim_2, Toprim-like	NA|735aa|down_5|NZ_CP023809.1_8957_11162_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|198aa|down_6|NZ_CP023809.1_11402_11996_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|300aa|down_7|NZ_CP023809.1_12008_12908_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|158aa|down_8|NZ_CP023809.1_12910_13384_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|87aa|down_9|NZ_CP023809.1_13749_14010_+	NA
