assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002848665.1_ASM284866v1	NZ_CP023794	Enterococcus faecium strain Efaecium_ER04484.3A chromosome, complete genome	1	2375060-2375169	1	CRISPRCasFinder	no		cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	NA,NA	NA|720aa|up_9|NZ_CP023794.1_2363647_2365807_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP023794.1_2365856_2366822_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP023794.1_2366910_2368050_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP023794.1_2368358_2369072_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP023794.1_2369325_2370027_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP023794.1_2370260_2371793_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NZ_CP023794.1_2371983_2373186_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP023794.1_2373267_2373957_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP023794.1_2374062_2374431_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP023794.1_2374483_2374987_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP023794.1_2375396_2376086_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP023794.1_2376189_2376612_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP023794.1_2376954_2377623_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP023794.1_2377635_2378508_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP023794.1_2378598_2379618_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NZ_CP023794.1_2379790_2380678_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP023794.1_2380754_2381300_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP023794.1_2381400_2381571_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP023794.1_2381594_2381747_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP023794.1_2381908_2382553_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_002848665.1_ASM284866v1	NZ_CP023794	Enterococcus faecium strain Efaecium_ER04484.3A chromosome, complete genome	2	2784567-2784753	1	PILER-CR	no	RT	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	Unclear	TTTTCTCGTACATCTACCGTTC	22	3	3	2784589-2784623|2784646-2784674|2784697-2784731	NZ_CP023794.1_2784805-2784839|NZ_CP023794.1_2784754-2784782|NZ_CP023794.1_2784805-2784839	NA	3	3	Orphan	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	NA|258aa|up_8|NZ_CP023794.1_2777800_2778574_+,NA|105aa|up_6|NZ_CP023794.1_2779149_2779464_-,NA|116aa|up_4|NZ_CP023794.1_2781254_2781602_-,NA|101aa|up_3|NZ_CP023794.1_2781594_2781897_-,NA|204aa|up_1|NZ_CP023794.1_2783488_2784100_-,NA|63aa|up_0|NZ_CP023794.1_2784111_2784300_-,NA|73aa|down_0|NZ_CP023794.1_2786945_2787164_-,NA|109aa|down_2|NZ_CP023794.1_2789695_2790022_-	NA|82aa|up_9|NZ_CP023794.1_2777450_2777696_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|258aa|up_8|NZ_CP023794.1_2777800_2778574_+	NA	NA|83aa|up_7|NZ_CP023794.1_2778802_2779051_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|105aa|up_6|NZ_CP023794.1_2779149_2779464_-	NA	NA|425aa|up_5|NZ_CP023794.1_2779920_2781195_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|116aa|up_4|NZ_CP023794.1_2781254_2781602_-	NA	NA|101aa|up_3|NZ_CP023794.1_2781594_2781897_-	NA	NA|464aa|up_2|NZ_CP023794.1_2782112_2783504_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|204aa|up_1|NZ_CP023794.1_2783488_2784100_-	NA	NA|63aa|up_0|NZ_CP023794.1_2784111_2784300_-	NA	NA|73aa|down_0|NZ_CP023794.1_2786945_2787164_-	NA	NA|391aa|down_1|NZ_CP023794.1_2788192_2789365_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|109aa|down_2|NZ_CP023794.1_2789695_2790022_-	NA	NA|68aa|down_3|NZ_CP023794.1_2790029_2790233_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|217aa|down_4|NZ_CP023794.1_2790307_2790958_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|389aa|down_5|NZ_CP023794.1_2791012_2792179_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|131aa|down_6|NZ_CP023794.1_2792267_2792660_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|148aa|down_7|NZ_CP023794.1_2792675_2793119_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|156aa|down_8|NZ_CP023794.1_2793637_2794105_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|513aa|down_9|NZ_CP023794.1_2794224_2795763_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases
GCF_002848665.1_ASM284866v1	NZ_CP023795	Enterococcus faecium strain Efaecium_ER04484.3A plasmid pER04484.3A.1, complete sequence	1	430-557	1	CRISPRCasFinder	no	cas14j	cas14j,DEDDh	Unclear	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	TypeV	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	NA,NA|111aa|down_0|NZ_CP023795.1_1864_2197_+,NA|791aa|down_3|NZ_CP023795.1_5053_7426_+,NA|87aa|down_9|NZ_CP023795.1_13749_14010_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|111aa|down_0|NZ_CP023795.1_1864_2197_+	NA	NA|114aa|down_1|NZ_CP023795.1_2815_3157_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|417aa|down_2|NZ_CP023795.1_3393_4644_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|791aa|down_3|NZ_CP023795.1_5053_7426_+	NA	NA|487aa|down_4|NZ_CP023795.1_7486_8947_+	pfam13155, Toprim_2, Toprim-like	NA|735aa|down_5|NZ_CP023795.1_8957_11162_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|198aa|down_6|NZ_CP023795.1_11402_11996_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|300aa|down_7|NZ_CP023795.1_12008_12908_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|158aa|down_8|NZ_CP023795.1_12910_13384_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|87aa|down_9|NZ_CP023795.1_13749_14010_+	NA
