assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002848645.1_ASM284864v1	NZ_CP023784	Enterococcus faecium strain Efaecium_ER04120.3A chromosome, complete genome	1	2376603-2376712	1	CRISPRCasFinder	no		cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	NA,NA	NA|720aa|up_9|NZ_CP023784.1_2365190_2367350_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP023784.1_2367399_2368365_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP023784.1_2368453_2369593_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP023784.1_2369901_2370615_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP023784.1_2370868_2371570_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP023784.1_2371803_2373336_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NZ_CP023784.1_2373526_2374729_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP023784.1_2374810_2375500_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP023784.1_2375605_2375974_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP023784.1_2376026_2376530_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP023784.1_2376939_2377629_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP023784.1_2377732_2378155_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP023784.1_2378497_2379166_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP023784.1_2379178_2380051_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP023784.1_2380141_2381161_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NZ_CP023784.1_2381333_2382221_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP023784.1_2382297_2382843_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP023784.1_2382943_2383114_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP023784.1_2383137_2383290_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP023784.1_2383451_2384096_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_002848645.1_ASM284864v1	NZ_CP023784	Enterococcus faecium strain Efaecium_ER04120.3A chromosome, complete genome	2	2786059-2786404	1,1	CRT,PILER-CR	no	RT	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	Unclear	TTTTCTCGTACATCTACNGTTC,TTTTCTCGTACATCTACCGTTC	22,22	0	0	NA	NA	NA:NA	6,3	6	Orphan	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	NA|258aa|up_8|NZ_CP023784.1_2779343_2780117_+,NA|105aa|up_6|NZ_CP023784.1_2780692_2781007_-,NA|116aa|up_4|NZ_CP023784.1_2782797_2783145_-,NA|101aa|up_3|NZ_CP023784.1_2783137_2783440_-,NA|204aa|up_1|NZ_CP023784.1_2785031_2785643_-,NA|63aa|up_0|NZ_CP023784.1_2785654_2785843_-,NA|73aa|down_0|NZ_CP023784.1_2788488_2788707_-,NA|109aa|down_2|NZ_CP023784.1_2789906_2790233_-	NA|82aa|up_9|NZ_CP023784.1_2778993_2779239_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|258aa|up_8|NZ_CP023784.1_2779343_2780117_+	NA	NA|83aa|up_7|NZ_CP023784.1_2780345_2780594_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|105aa|up_6|NZ_CP023784.1_2780692_2781007_-	NA	NA|425aa|up_5|NZ_CP023784.1_2781463_2782738_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|116aa|up_4|NZ_CP023784.1_2782797_2783145_-	NA	NA|101aa|up_3|NZ_CP023784.1_2783137_2783440_-	NA	NA|464aa|up_2|NZ_CP023784.1_2783655_2785047_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|204aa|up_1|NZ_CP023784.1_2785031_2785643_-	NA	NA|63aa|up_0|NZ_CP023784.1_2785654_2785843_-	NA	NA|73aa|down_0|NZ_CP023784.1_2788488_2788707_-	NA	NA|348aa|down_1|NZ_CP023784.1_2788708_2789752_-	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|109aa|down_2|NZ_CP023784.1_2789906_2790233_-	NA	NA|68aa|down_3|NZ_CP023784.1_2790240_2790444_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|217aa|down_4|NZ_CP023784.1_2790518_2791169_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|389aa|down_5|NZ_CP023784.1_2791223_2792390_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|131aa|down_6|NZ_CP023784.1_2792478_2792871_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|148aa|down_7|NZ_CP023784.1_2792886_2793330_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|156aa|down_8|NZ_CP023784.1_2793848_2794316_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|513aa|down_9|NZ_CP023784.1_2794435_2795974_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases
GCF_002848645.1_ASM284864v1	NZ_CP023785	Enterococcus faecium strain Efaecium_ER04120.3A plasmid pER04120.3A.1, complete sequence	1	430-557	1	CRISPRCasFinder	no	cas14j	cas14j,DEDDh	Unclear	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	TypeV	cas3,RT,DEDDh,cas2,DinG,csa3,cas14j	NA,NA|111aa|down_0|NZ_CP023785.1_1864_2197_+,NA|791aa|down_3|NZ_CP023785.1_5053_7426_+,NA|87aa|down_9|NZ_CP023785.1_13749_14010_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|111aa|down_0|NZ_CP023785.1_1864_2197_+	NA	NA|114aa|down_1|NZ_CP023785.1_2815_3157_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|417aa|down_2|NZ_CP023785.1_3393_4644_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|791aa|down_3|NZ_CP023785.1_5053_7426_+	NA	NA|487aa|down_4|NZ_CP023785.1_7486_8947_+	pfam13155, Toprim_2, Toprim-like	NA|735aa|down_5|NZ_CP023785.1_8957_11162_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|198aa|down_6|NZ_CP023785.1_11402_11996_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|300aa|down_7|NZ_CP023785.1_12008_12908_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|158aa|down_8|NZ_CP023785.1_12910_13384_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|87aa|down_9|NZ_CP023785.1_13749_14010_+	NA
