The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025443	Listeria monocytogenes strain MF4545 chromosome, complete genome	3010323	121984	128509	3010323	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|121984_122437_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|122442_122778_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|122994_123423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003721742.1|123434_123851_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
WP_009930418.1|124128_124518_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003721744.1|124530_125043_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|125090_125393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009930419.1|125434_125839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989347.1|125825_127694_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_009911828.1|127690_128509_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
NZ_CP025443	Listeria monocytogenes strain MF4545 chromosome, complete genome	3010323	667388	745207	3010323	protease,capsid,portal,holin,head,terminase,transposase,integrase,tail	Listeria_phage(50.0%)	84	667338:667397	722435:723758
667338:667397	attL	AGTCAAGTCCATAATCCTGTGTAAAATACTATACAATGTTTTACCGGTCTCTCATTGATC	NA	NA	NA	NA
WP_002323245.1|667388_668561_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_003722819.1|668746_669013_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_003722820.1|669050_669494_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003722821.1|669524_670226_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_014601360.1|670311_671991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989532.1|672296_677045_+	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
WP_009932137.1|677140_677416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003722826.1|677477_678005_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_010989533.1|678363_680394_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_009931475.1|680395_680848_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003722829.1|680848_681910_+	PTS fructose transporter subunit EIIC	NA	NA	NA	NA	NA
WP_003722830.1|681924_682233_+	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA	NA
WP_009924577.1|682259_683528_+	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
WP_003722832.1|683617_684322_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_003770811.1|684426_684843_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_003722834.1|684856_685450_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014930665.1|685612_686764_-|integrase	site-specific integrase	integrase	A8ATX2	Listeria_phage	46.3	4.5e-87
WP_039187930.1|686785_687499_-	lipoprotein	NA	NA	NA	NA	NA
WP_031641923.1|687553_688054_-	hypothetical protein	NA	A0A1S7FYX8	Listeria_phage	31.1	7.1e-13
WP_039187933.1|688054_688405_-	helix-turn-helix domain-containing protein	NA	A0A059T669	Listeria_phage	47.6	7.9e-19
WP_031641921.1|688558_688756_+	helix-turn-helix transcriptional regulator	NA	A0A059T7X5	Listeria_phage	52.3	7.5e-11
WP_039187936.1|688778_689105_+	DUF771 domain-containing protein	NA	A0A2H4J474	uncultured_Caudovirales_phage	40.6	3.2e-14
WP_039188040.1|690317_690674_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_039188042.1|690670_691087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039188044.1|691273_691798_+	hypothetical protein	NA	A0A059T5F9	Listeria_phage	95.4	5.9e-95
WP_039188046.1|691806_692271_+	class I SAM-dependent methyltransferase	NA	A0A059T693	Listeria_phage	97.4	1.4e-87
WP_039194685.1|692267_692828_+	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	95.7	3.8e-100
WP_014601510.1|692886_693288_+	hypothetical protein	NA	A8ATD9	Listeria_phage	100.0	2.6e-74
WP_039194683.1|693284_693494_+	hypothetical protein	NA	A8ATE0	Listeria_phage	94.2	1.6e-30
WP_039194681.1|693597_693777_+	hypothetical protein	NA	A0A076G7F4	Listeria_phage	85.5	1.4e-19
WP_039194679.1|693773_694253_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	83.8	2.5e-68
WP_039187812.1|694273_694513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039187808.1|694503_694689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552279.1|694759_695278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552281.1|695274_695817_+|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	53.3	2.5e-48
WP_014930678.1|695832_696171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039187805.1|696435_696762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052198696.1|696758_697121_+	HNH endonuclease	NA	A0A075M5R4	Enterococcus_phage	45.2	1.2e-14
WP_012951321.1|697215_697743_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	46.7	6.1e-31
WP_068996415.1|697711_699463_+|terminase	terminase large subunit	terminase	A0A2H4JCI4	uncultured_Caudovirales_phage	50.5	6.9e-156
WP_023552290.1|699469_699670_+	DUF1056 family protein	NA	NA	NA	NA	NA
WP_068996416.1|699672_700908_+|portal	phage portal protein	portal	A0A2H4JAR2	uncultured_Caudovirales_phage	42.1	2.7e-82
WP_049955709.1|700904_701471_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1D6Z2A7	Staphylococcus_phage	52.7	2.7e-45
WP_068996417.1|701535_702705_+|capsid	phage major capsid protein	capsid	A0A060AI54	Enterococcus_phage	37.7	1.4e-43
WP_012951326.1|702753_703092_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JB77	uncultured_Caudovirales_phage	37.8	8.1e-13
WP_031669990.1|703061_703382_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_068996418.1|703375_703741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068996419.1|703743_704142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068996420.1|704162_704738_+|tail	phage tail protein	tail	M1PRQ7	Streptococcus_phage	42.9	7.1e-33
WP_068996421.1|704827_705175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068996422.1|705371_709571_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	33.0	1.6e-12
WP_068996423.1|709563_711807_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	30.1	2.9e-58
WP_068996424.1|711812_714104_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	37.7	8.3e-133
WP_077951459.1|714096_715158_+	hypothetical protein	NA	A8ATW1	Listeria_phage	68.6	1.0e-93
WP_003722523.1|715196_715562_+	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
WP_068996425.1|715574_715853_+|holin	holin	holin	R4IDW2	Listeria_phage	94.6	2.0e-41
WP_068996426.1|715856_716702_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	94.7	4.8e-139
WP_039390104.1|716973_717204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061106462.1|717331_719272_+	N-6 DNA methylase	NA	A0A1W6JNK1	Staphylococcus_phage	54.2	9.9e-188
WP_061106461.1|719403_720306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002323245.1|721270_722443_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_009912342.1|722879_723509_+	hypothetical protein	NA	A8ASL7	Listeria_phage	90.4	1.9e-100
WP_010989534.1|724148_724682_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
722435:723758	attR	GATCAATGAGAGACCGGTAAAACATTGTATAGTATTTTACACAGGATTATGGACTTGACTCCATATTATGAAATATGATAAAAAATTAAATAAGGAAAGAAATTTCATATAAAAAACAATTTATATTTTGAGTAGATATGTACTTTTTATGACGGTTAGAAAAAGGCATGCATAAACTGTGAATAACAACTTGGAATGTGTGTGATATTTTAGTTTAAAACACAATGTTACACAAATCGTGTAATAATAATTCTAAATAAGTCCTGTTTTTAGTCATTCATGACAAGAATCGGACATTTCATTACTTTTTTGGTTATACATGAACTGGACGTGTTAGAGTATTTGTAAGGAGGTTATATGGAAGATTCTAATAATTAGAATTAATCTTTAGTCAGTAACTTTTGTTAGTTCAAAATAAATTCAGACACAAAAGGAGCAAAAGACGATGAAAAATAAAACAACTAAAAAAATTATTTGTGGGGGTTTGGCTACTGTTCTTTTATCTAGTTCATTGGTTTTACCAACAACATCTTTAGCATCTACATCTAAACAAAAGGTTCAAGATTATCAACAAGAGGAAACTTTTTCAGACTCACCTTTAACAGAATTAGACAATCTTATTGCAGAAAAATATATAACTTTTGACAGTCCACTGAAACAATATAAAGTAAATCCGTCTATTGGTAGTGAAATGACAACAGAAAAAATAGAGGCCGTTAACAAACAAGTGGCTGAGACAAATAATTTACTTACTTTAGCTACAAATGACTCAAGTACCAATGTTATAGCTGTGACTCCTGAAGGTAAAGAGACAGTAGTTAAAAGAGGTTTGTTAAAAGGAGCGGGAGTGAATAAAGTTACATACCATTGGAATTACGCACGTATAAGATTGTCAAAAAATACAGTAAGAACAATGGGCGTTGGCTTAAGTATAGCTGGGATCTGGTTGCCGTTGAAAGTAGTATCAAAAGTTTGTGCTTCTCTCGGTGTAGGTACAGGTTTTGTTAAGCACGGAATTTGGTTTGATTATAATTATTTTTCTAACCTACTTCTTACTGGCTATGGGTGGCAGTGAATTTTACTTGGAGGAATTCTAAATGCGAGGAACACGTTGGTTTTATATAAGAGCTCTTATTGTAACAATTATAGCAATACCTAGTCTTTTTATATGGGATACTAGAACTGTAATACTTTTCATATTCTTGTACTTTGTTATTCAAGAAGTAATTTTCTTTATTATTGATAAAAAAGATCATAATAAGAATGATAAACTTAGTTAAGATTAAGAACTAGCAAAACTAATAATATTTATCTGAAATTGATT	NA	NA	NA	NA
WP_003732615.1|724745_725663_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_003722840.1|725928_727809_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	38.4	6.4e-107
WP_009930760.1|727904_728633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732614.1|728775_729426_+	transaldolase	NA	A0A0E3HJ81	Synechococcus_phage	27.6	3.4e-15
WP_009931059.1|729468_731289_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	28.4	2.2e-48
WP_003732612.1|731523_732915_+	amino acid permease	NA	NA	NA	NA	NA
WP_010989536.1|733004_733844_+	VOC family protein	NA	NA	NA	NA	NA
WP_003721764.1|733926_734211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101961275.1|734308_735259_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_003721766.1|735282_735924_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010989537.1|735966_738657_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_003721768.1|738702_739350_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003721769.1|739358_739895_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003733993.1|739881_740802_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_003721771.1|740991_741201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989538.1|741268_741976_+	serine/threonine protein phosphatase	NA	A0A249Y183	Enterococcus_phage	27.8	2.5e-19
WP_003721773.1|742019_742583_-	DUF420 domain-containing protein	NA	NA	NA	NA	NA
WP_009931746.1|742702_743119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009925179.1|743170_743806_+	endonuclease III domain-containing protein	NA	NA	NA	NA	NA
WP_010989540.1|743795_744692_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009931745.1|744922_745207_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP025443	Listeria monocytogenes strain MF4545 chromosome, complete genome	3010323	1171145	1178568	3010323		Hokovirus(33.33%)	8	NA	NA
WP_003721506.1|1171145_1171529_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_010989659.1|1171550_1172534_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_010989660.1|1172548_1173562_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_003721509.1|1173770_1175261_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_009931487.1|1175272_1176097_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	7.4e-68
WP_009931485.1|1176109_1176418_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_009931483.1|1176478_1176883_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_010989661.1|1177011_1178568_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 4
NZ_CP025443	Listeria monocytogenes strain MF4545 chromosome, complete genome	3010323	1295357	1376305	3010323	protease,capsid,portal,holin,terminase,tRNA,integrase,tail	Listeria_phage(81.03%)	96	1295240:1295256	1338602:1338618
1295240:1295256	attL	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_101961290.1|1295357_1296512_-|integrase	site-specific integrase	integrase	A8ATC7	Listeria_phage	94.8	2.0e-207
WP_039153595.1|1296646_1297081_-	hypothetical protein	NA	Q8W5Y2	Listeria_phage	81.2	6.5e-55
WP_039153592.1|1297096_1297666_-	DUF4352 domain-containing protein	NA	R4IBV3	Listeria_phage	92.3	9.8e-11
WP_039153589.1|1297716_1298169_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	90.7	1.1e-78
WP_039153587.1|1298185_1298509_-	helix-turn-helix transcriptional regulator	NA	A0A059T6G1	Listeria_phage	69.2	4.7e-34
WP_003730994.1|1299138_1299342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003730995.1|1299408_1299600_+	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	87.1	5.4e-22
WP_061105177.1|1299621_1299864_+	hypothetical protein	NA	A8ATD2	Listeria_phage	92.5	1.5e-40
WP_069011135.1|1299866_1300052_+	hypothetical protein	NA	A8ATD3	Listeria_phage	96.7	1.4e-27
WP_009931094.1|1300575_1300866_+	hypothetical protein	NA	A0A059T7V3	Listeria_phage	89.4	1.8e-40
WP_031659545.1|1300883_1301066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731843.1|1301255_1301471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101961291.1|1301549_1301978_+	pentapeptide repeat-containing protein	NA	A8ATE4	Listeria_phage	74.2	7.8e-45
WP_014601512.1|1302020_1302485_+	methyltransferase domain-containing protein	NA	A0A059T693	Listeria_phage	96.8	6.9e-87
WP_039194685.1|1302481_1303042_+	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	95.7	3.8e-100
WP_014601510.1|1303100_1303502_+	hypothetical protein	NA	A8ATD9	Listeria_phage	100.0	2.6e-74
WP_025283119.1|1303498_1303705_+	hypothetical protein	NA	A0A059T6C7	Listeria_phage	92.6	1.7e-29
WP_157824769.1|1303734_1303902_+	hypothetical protein	NA	A0A059T654	Listeria_phage	92.2	8.9e-21
WP_023548953.1|1303898_1304333_+	hypothetical protein	NA	A8ATS7	Listeria_phage	52.8	2.5e-38
WP_015987318.1|1304535_1304919_+	hypothetical protein	NA	A8ATE8	Listeria_phage	100.0	2.5e-66
WP_039153573.1|1304920_1305400_+	siphovirus Gp157 family protein	NA	R4IBM0	Listeria_phage	97.5	1.9e-76
WP_039153570.1|1305412_1306102_+	AAA family ATPase	NA	R4IDY8	Listeria_phage	91.7	6.8e-123
WP_072215795.1|1306180_1307422_+	DEAD/DEAH box helicase	NA	A8ATF1	Listeria_phage	95.8	1.5e-213
WP_039153564.1|1307444_1307927_+	DUF669 domain-containing protein	NA	A8ATF2	Listeria_phage	98.8	9.3e-87
WP_039153561.1|1307949_1310238_+	DNA primase	NA	A8ATF3	Listeria_phage	93.9	0.0e+00
WP_014601407.1|1310571_1310889_+	VRR-NUC domain-containing protein	NA	A8ATF4	Listeria_phage	95.1	9.2e-51
WP_003731659.1|1310890_1311103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046422201.1|1311692_1312232_+	DUF3310 domain-containing protein	NA	A8ATF5	Listeria_phage	74.9	1.2e-71
WP_025370581.1|1312228_1312498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731655.1|1312742_1312970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031668027.1|1312982_1313408_+	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	92.9	1.7e-68
WP_038406036.1|1313994_1314309_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	98.1	1.5e-56
WP_031646261.1|1314357_1314714_+	hypothetical protein	NA	A8AT94	Listeria_phage	98.0	2.6e-46
WP_023552366.1|1314710_1316354_+|terminase	terminase large subunit	terminase	A8AT95	Listeria_phage	98.7	0.0e+00
WP_023548926.1|1316365_1317496_+|portal	phage portal protein	portal	A8AT96	Listeria_phage	93.1	1.7e-203
WP_031669132.1|1317492_1318299_+|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	93.3	3.8e-133
WP_003731647.1|1318325_1319477_+|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	93.2	2.7e-201
WP_003731645.1|1319663_1319963_+	hypothetical protein	NA	A8ATA0	Listeria_phage	100.0	5.3e-48
WP_003731644.1|1319946_1320312_+	hypothetical protein	NA	A8ATA1	Listeria_phage	100.0	1.3e-64
WP_003731643.1|1320308_1320710_+	hypothetical protein	NA	A8ATA2	Listeria_phage	100.0	2.1e-68
WP_012581456.1|1320706_1321090_+	hypothetical protein	NA	A8ATA3	Listeria_phage	100.0	3.8e-67
WP_031672556.1|1321111_1321699_+|tail	phage tail protein	tail	A8ATA4	Listeria_phage	99.5	5.8e-107
WP_009917698.1|1321769_1322102_+	hypothetical protein	NA	A8ATA5	Listeria_phage	99.1	1.8e-52
WP_039153543.1|1322317_1327129_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	70.3	0.0e+00
WP_031644613.1|1327116_1328766_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	99.5	0.0e+00
WP_012951555.1|1328778_1331073_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	94.0	0.0e+00
WP_031644619.1|1331062_1332157_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	87.9	2.2e-184
WP_012951557.1|1332204_1332507_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	93.0	1.7e-38
WP_012951558.1|1332506_1332764_+|holin	phage holin	holin	A8ATB7	Listeria_phage	69.0	3.2e-25
WP_101961292.1|1332763_1333609_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	95.1	1.3e-139
WP_039390104.1|1333880_1334111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061106462.1|1334238_1336179_+	N-6 DNA methylase	NA	A0A1W6JNK1	Staphylococcus_phage	54.2	9.9e-188
WP_061106461.1|1336310_1337213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003769913.1|1337271_1337478_-	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	82.8	1.3e-16
WP_009933529.1|1338068_1338302_+	hypothetical protein	NA	R4IDW6	Listeria_phage	78.9	2.8e-28
WP_009933528.1|1338298_1338490_+	hypothetical protein	NA	R4IBI5	Listeria_phage	88.9	8.9e-25
WP_010989715.1|1338983_1340342_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
1338602:1338618	attR	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_010989716.1|1340383_1340977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009914084.1|1341130_1341538_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_009924169.1|1341702_1342302_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.0	5.8e-30
WP_003723543.1|1342333_1342594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989717.1|1342717_1344130_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
WP_003723545.1|1344154_1344418_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_003723546.1|1344585_1345062_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003723547.1|1345099_1345345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723548.1|1345341_1346547_-	MFS transporter	NA	NA	NA	NA	NA
WP_003723549.1|1346751_1347411_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723550.1|1347452_1347647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723551.1|1347713_1348562_-	YitT family protein	NA	NA	NA	NA	NA
WP_009931701.1|1349180_1349894_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_010989718.1|1349924_1351571_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_003723556.1|1351589_1353074_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_003723557.1|1353189_1353642_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_003723558.1|1353688_1354153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723559.1|1354341_1355262_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_009932313.1|1355281_1356529_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
WP_003723561.1|1356512_1357343_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
WP_003723562.1|1357478_1358618_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1358698_1359094_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1359244_1359460_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010989719.1|1359578_1360112_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1360129_1360795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1361056_1361995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1362109_1363393_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1363578_1364838_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723887.1|1364956_1365523_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723888.1|1365557_1366127_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1366228_1366771_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1366780_1367644_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1367640_1368426_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_010989720.1|1368559_1369420_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_009924617.1|1369691_1371770_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
WP_010989721.1|1371832_1373137_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009911635.1|1373419_1374322_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_014601431.1|1374342_1374882_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_010989722.1|1374895_1376305_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.7	4.9e-43
>prophage 5
NZ_CP025443	Listeria monocytogenes strain MF4545 chromosome, complete genome	3010323	1916378	1924664	3010323		Synechococcus_phage(33.33%)	8	NA	NA
WP_003722243.1|1916378_1916945_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_009933235.1|1916941_1917991_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.0e-61
WP_010989807.1|1918009_1919437_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	31.9	8.1e-54
WP_010989808.1|1919421_1921641_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	2.0e-160
WP_003733240.1|1921633_1922317_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1922320_1922566_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_010989809.1|1922577_1923291_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.3e-41
WP_003733238.1|1923371_1924664_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 6
NZ_CP025443	Listeria monocytogenes strain MF4545 chromosome, complete genome	3010323	2600236	2608080	3010323		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2600236_2601208_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2601215_2602184_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_010990001.1|2602185_2603061_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
WP_010990002.1|2603168_2604899_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.0	1.3e-175
WP_009930954.1|2604940_2606002_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_009924988.1|2606018_2607002_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
WP_003722610.1|2607120_2608080_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 1
NZ_CP025444	Listeria monocytogenes strain MF4545 plasmid pMF4545, complete sequence	25550	7578	16661	25550	transposase	Streptococcus_phage(33.33%)	9	NA	NA
WP_003728469.1|7578_10494_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.7	1.9e-174
WP_003728468.1|10497_11052_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	53.4	7.0e-38
WP_003728467.1|11331_11691_+	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	50.0	3.1e-26
WP_003728466.1|11690_13826_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	64.5	1.6e-247
WP_012952127.1|14317_14863_+	YdhK family protein	NA	NA	NA	NA	NA
WP_003728511.1|15238_15847_+	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	42.9	1.0e-21
WP_003728510.1|15836_16064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731679.1|16183_16462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728509.1|16424_16661_+	helix-turn-helix transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	53.4	6.7e-14
