The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	3016037	120652	127177	3016037	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|120652_121105_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|121110_121446_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|121662_122091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003721742.1|122102_122519_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
WP_009930418.1|122796_123186_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003721744.1|123198_123711_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|123758_124061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009930419.1|124102_124507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989347.1|124493_126362_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_009911828.1|126358_127177_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	3016037	667388	745207	3016037	head,portal,transposase,tail,holin,integrase,capsid,protease,terminase	Listeria_phage(50.0%)	84	667334:667393	722266:723593
667334:667393	attL	TTTAAGTCAAGTCCATAATCCTGTGTAAAATACTATACAATGTTTTACCGGTCTCTCATT	NA	NA	NA	NA
WP_002323245.1|667388_668561_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_003722819.1|668746_669013_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_003722820.1|669050_669494_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003722821.1|669524_670226_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_014601360.1|670311_671991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989532.1|672296_677045_+	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
WP_009932137.1|677140_677416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003722826.1|677477_678005_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_010989533.1|678363_680394_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_009931475.1|680395_680848_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003722829.1|680848_681910_+	PTS fructose transporter subunit EIIC	NA	NA	NA	NA	NA
WP_003722830.1|681924_682233_+	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA	NA
WP_009924577.1|682259_683528_+	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
WP_003722832.1|683617_684322_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_003770811.1|684426_684843_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_003722834.1|684856_685450_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_014930665.1|685612_686764_-|integrase	site-specific integrase	integrase	A8ATX2	Listeria_phage	46.3	4.5e-87
WP_039187930.1|686785_687499_-	lipoprotein	NA	NA	NA	NA	NA
WP_031641923.1|687553_688054_-	hypothetical protein	NA	A0A1S7FYX8	Listeria_phage	31.1	7.1e-13
WP_039187933.1|688054_688405_-	helix-turn-helix domain-containing protein	NA	A0A059T669	Listeria_phage	47.6	7.9e-19
WP_031641921.1|688558_688756_+	helix-turn-helix transcriptional regulator	NA	A0A059T7X5	Listeria_phage	52.3	7.5e-11
WP_039187936.1|688778_689105_+	DUF771 domain-containing protein	NA	A0A2H4J474	uncultured_Caudovirales_phage	40.6	3.2e-14
WP_039188040.1|690317_690674_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_039188042.1|690670_691087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039188044.1|691273_691798_+	hypothetical protein	NA	A0A059T5F9	Listeria_phage	95.4	5.9e-95
WP_039188046.1|691806_692271_+	class I SAM-dependent methyltransferase	NA	A0A059T693	Listeria_phage	97.4	1.4e-87
WP_039194685.1|692267_692828_+	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	95.7	3.8e-100
WP_014601510.1|692886_693288_+	hypothetical protein	NA	A8ATD9	Listeria_phage	100.0	2.6e-74
WP_039194683.1|693284_693494_+	hypothetical protein	NA	A8ATE0	Listeria_phage	94.2	1.6e-30
WP_039194681.1|693597_693777_+	hypothetical protein	NA	A0A076G7F4	Listeria_phage	85.5	1.4e-19
WP_039194679.1|693773_694253_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	83.8	2.5e-68
WP_039187812.1|694273_694513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039187808.1|694503_694689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552279.1|694759_695278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552281.1|695274_695817_+|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	53.3	2.5e-48
WP_014930678.1|695832_696171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039187805.1|696435_696762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052198696.1|696758_697121_+	HNH endonuclease	NA	A0A075M5R4	Enterococcus_phage	45.2	1.2e-14
WP_012951321.1|697215_697743_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	46.7	6.1e-31
WP_068996415.1|697711_699463_+|terminase	terminase large subunit	terminase	A0A2H4JCI4	uncultured_Caudovirales_phage	50.5	6.9e-156
WP_023552290.1|699469_699670_+	DUF1056 family protein	NA	NA	NA	NA	NA
WP_068996416.1|699672_700908_+|portal	phage portal protein	portal	A0A2H4JAR2	uncultured_Caudovirales_phage	42.1	2.7e-82
WP_049955709.1|700904_701471_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1D6Z2A7	Staphylococcus_phage	52.7	2.7e-45
WP_068996417.1|701535_702705_+|capsid	phage major capsid protein	capsid	A0A060AI54	Enterococcus_phage	37.7	1.4e-43
WP_012951326.1|702753_703092_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JB77	uncultured_Caudovirales_phage	37.8	8.1e-13
WP_031669990.1|703061_703382_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_068996418.1|703375_703741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068996419.1|703743_704142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068996420.1|704162_704738_+|tail	phage tail protein	tail	M1PRQ7	Streptococcus_phage	42.9	7.1e-33
WP_068996421.1|704827_705175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_068996422.1|705371_709571_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	33.0	1.6e-12
WP_068996423.1|709563_711807_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	30.1	2.9e-58
WP_068996424.1|711812_714104_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	37.7	8.3e-133
WP_077951459.1|714096_715158_+	hypothetical protein	NA	A8ATW1	Listeria_phage	68.6	1.0e-93
WP_003722523.1|715196_715562_+	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
WP_068996425.1|715574_715853_+|holin	holin	holin	R4IDW2	Listeria_phage	94.6	2.0e-41
WP_068996426.1|715856_716702_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	94.7	4.8e-139
WP_039390104.1|716973_717204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061106462.1|717331_719272_+	N-6 DNA methylase	NA	A0A1W6JNK1	Staphylococcus_phage	54.2	9.9e-188
WP_061106461.1|719403_720306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009912342.1|721547_722177_+	hypothetical protein	NA	A8ASL7	Listeria_phage	90.4	1.9e-100
WP_002323245.1|722320_723493_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_010989534.1|724148_724682_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
722266:723593	attR	TTTAAGTCAAGTCCATAATCCTGTGTAAAATACTATACAATGTTTTACCGGTCTCTCATTGATCAAACTTAATATATTTTCTTGTAGAACTGAGCCATTCGTCATGAAGGTCCATAAGGACAGCTCCAATTAATCGATTGGCAGACGTTCGGTTGGGAAAAATCCGAATAATCTTTTCTCTTCTGCGGACTTCCTGGTTCAGTCGTTCAAGAAGGTTGGTGCTTTTTAGCCGATTATGACTATTTCCGATAACCGTGTATTGAAAGGCATCTTCGAAGCCATTATCCAATATTTCGCAGGCTTTTGTATATTTAGGCTGGTCGATATATTCACCGACTAAGGCATTCTTAGCTGTTCGAGCGAGTTCAATATCCGTAAACTTAAAGATCGCTTTTACTGCTTCTCTAAACGGTTTTGAATTCTTTTTTGGAATGGAACTGAAGATGTTTCTTAAAAAATGGACCTGGCATCTCTGCCAACTTGCGTTGGTAAATGACTTACGAATCGCAGACACTAGGCCTTTATGGGCATCAGAAATGATGAGTTCTGTCCCCTTTAGGCCGCGTTCTTTTAAGTATTCAAAGAAGATGGACCATGTGTCATCACTTTCTTCATTTTGAATCATGAAGCCAATGATTTCACGGTCGCCACCTTCTGTTATCCCGATCGCAATATGGCAGCTTTTAGAAAGCACTCGATGGTCCTCACGGACTTTTATGTAGAGAACATCAGTCATCAGATAAGGATAATTCGTACCTGAGAGTGAACGGTTCTGCCATTCGTTGACCATCGGGTCTAACTGCTCAGTCAGGCTAGAAACAAAAGATTTCGATACAGATTTTCCACATAGCTCTTCAACAATCTTTGAAACTTTACGTGTCGAAACGCCCGAAACATACATCTCAAGCATTGAAGCGAGCAGTGCCTTTTCATTTCGCTGATAACGCTCAAACACCGTCGGTGAAAATTCACCATCACGTGTTCTAGGCACTTTTAATTCGAGTGTACCCACACGAGTCGTAAAGTCTCGCTCATAATAGCCATTTCTTTGACTCTGACGACTTTCTGAACGTTCATAGTCATCGGCTTGAATATATTCTGTTCGTTGATTTTCCATCAATTGGTTGAAAACAGTGGTTAAAATATTTTTAGAAACATCATCTTTTACCGAATGTTCAATAATACTTTGAACCTCTTCGTTGTTCAGTGTAAAATGTACTTGGGTCATGTAACGTCCTCCTGGGTATGTTTTTGTGGTTAAAAACATTGTACCGTAAAAGGGCTGTTACATGGCCTTTTATCTTTTACACAATTATATGGACTTTATC	NA	NA	NA	NA
WP_003732615.1|724745_725663_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_003722840.1|725928_727809_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	38.4	6.4e-107
WP_009930760.1|727904_728633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732614.1|728775_729426_+	transaldolase	NA	A0A0E3HJ81	Synechococcus_phage	27.6	3.4e-15
WP_009931059.1|729468_731289_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	28.4	2.2e-48
WP_003732612.1|731523_732915_+	amino acid permease	NA	NA	NA	NA	NA
WP_010989536.1|733004_733844_+	VOC family protein	NA	NA	NA	NA	NA
WP_003721764.1|733926_734211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101961275.1|734308_735259_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_003721766.1|735282_735924_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010989537.1|735966_738657_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_003721768.1|738702_739350_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003721769.1|739358_739895_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003733993.1|739881_740802_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_003721771.1|740991_741201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989538.1|741268_741976_+	serine/threonine protein phosphatase	NA	A0A249Y183	Enterococcus_phage	27.8	2.5e-19
WP_003721773.1|742019_742583_-	DUF420 domain-containing protein	NA	NA	NA	NA	NA
WP_009931746.1|742702_743119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009925179.1|743170_743806_+	endonuclease III domain-containing protein	NA	NA	NA	NA	NA
WP_010989540.1|743795_744692_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009931745.1|744922_745207_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	3016037	1169814	1177237	3016037		Hokovirus(33.33%)	8	NA	NA
WP_003721506.1|1169814_1170198_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_010989659.1|1170219_1171203_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_010989660.1|1171217_1172231_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_003721509.1|1172439_1173930_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_009931487.1|1173941_1174766_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.6	7.4e-68
WP_009931485.1|1174778_1175087_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_009931483.1|1175147_1175552_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_010989661.1|1175680_1177237_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 4
NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	3016037	1293857	1375573	3016037	portal,transposase,tail,holin,integrase,capsid,tRNA,protease,terminase	Listeria_phage(73.68%)	98	1293740:1293756	1337870:1337886
1293740:1293756	attL	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_014601386.1|1293857_1295012_-|integrase	site-specific integrase	integrase	A8ATC7	Listeria_phage	94.8	1.3e-206
WP_014930257.1|1295141_1296005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014601388.1|1296056_1296509_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	86.0	1.0e-74
WP_014601389.1|1296525_1296849_-	helix-turn-helix transcriptional regulator	NA	Q8W5Y0	Listeria_phage	73.8	6.3e-39
WP_009931099.1|1297653_1297977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009929536.1|1297991_1298195_+	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	100.0	3.1e-28
WP_009931097.1|1298196_1298439_+	hypothetical protein	NA	A8ATD2	Listeria_phage	98.8	5.4e-43
WP_009931094.1|1299150_1299441_+	hypothetical protein	NA	A0A059T7V3	Listeria_phage	89.4	1.8e-40
WP_031659545.1|1299458_1299641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930119.1|1299834_1300110_+	hypothetical protein	NA	R4ICD2	Listeria_phage	94.3	3.4e-41
WP_009931089.1|1300106_1300550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930120.1|1300566_1300875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930121.1|1300871_1301435_+	DUF1642 domain-containing protein	NA	A8ATD8	Listeria_phage	61.5	1.6e-58
WP_157824771.1|1301606_1301780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009932944.1|1302006_1302636_+	hypothetical protein	NA	A0A191KBJ8	Streptococcus_virus	57.9	2.4e-66
WP_003722554.1|1302654_1302822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045131531.1|1302925_1303102_+	hypothetical protein	NA	A0A076G7F4	Listeria_phage	86.2	5.5e-21
WP_014930124.1|1303098_1303500_+	hypothetical protein	NA	A8ATD9	Listeria_phage	95.5	7.8e-71
WP_025283119.1|1303496_1303703_+	hypothetical protein	NA	A0A059T6C7	Listeria_phage	92.6	1.7e-29
WP_154079741.1|1303729_1303900_+	hypothetical protein	NA	A0A059T654	Listeria_phage	92.3	2.4e-21
WP_023548953.1|1303896_1304331_+	hypothetical protein	NA	A8ATS7	Listeria_phage	52.8	2.5e-38
WP_009933640.1|1304533_1304734_+	hypothetical protein	NA	A0A059T6A2	Listeria_phage	58.1	2.6e-11
WP_014930125.1|1304730_1305342_+	hypothetical protein	NA	B6D7K1	Listeria_phage	49.5	6.8e-50
WP_009933853.1|1305356_1305590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930126.1|1305586_1306357_+	DUF1351 domain-containing protein	NA	B6D7K2	Listeria_phage	27.4	3.3e-17
WP_014930127.1|1306359_1306995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014930128.1|1307067_1308756_+	hypothetical protein	NA	A8ATS1	Listeria_phage	43.6	1.6e-125
WP_014930129.1|1308758_1310564_+	primase	NA	A8ATS2	Listeria_phage	40.2	3.5e-126
WP_025283122.1|1310979_1311513_+	DUF3310 domain-containing protein	NA	A8ATF5	Listeria_phage	79.4	1.3e-76
WP_003731655.1|1311730_1311958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009917712.1|1311970_1312396_+	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	100.0	8.0e-74
WP_010991275.1|1312493_1313237_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_014930130.1|1313483_1313810_+	hypothetical protein	NA	A0A059T5G5	Listeria_phage	100.0	2.2e-55
WP_009931610.1|1313809_1314124_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	98.1	5.0e-57
WP_012951543.1|1314173_1314530_+	hypothetical protein	NA	A0A059T7Y1	Listeria_phage	98.0	2.0e-46
WP_012951544.1|1314526_1316170_+|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	99.3	0.0e+00
WP_009917707.1|1316179_1316569_-	DUF2513 domain-containing protein	NA	A0A1Q1PVT8	Staphylococcus_phage	39.8	3.7e-17
WP_012951545.1|1316619_1317750_+|portal	phage portal protein	portal	A0A059T6F0	Listeria_phage	99.5	2.8e-214
WP_101961279.1|1317746_1318463_+|protease	Clp protease ClpP	protease	A0A1S5SFF8	Streptococcus_phage	58.6	2.1e-66
WP_012951547.1|1318489_1319641_+|capsid	phage major capsid protein	capsid	A0A059T678	Listeria_phage	99.5	3.1e-213
WP_009934007.1|1319827_1320127_+	hypothetical protein	NA	A8ATA0	Listeria_phage	98.0	9.9e-47
WP_009934006.1|1320110_1320476_+	hypothetical protein	NA	A0A059T6F2	Listeria_phage	96.7	1.6e-62
WP_012951550.1|1320472_1320874_+	hypothetical protein	NA	A0A059T5F3	Listeria_phage	100.0	2.1e-68
WP_009931623.1|1320870_1321254_+	hypothetical protein	NA	A0A059T681	Listeria_phage	96.1	6.1e-65
WP_009931624.1|1321274_1321862_+|tail	phage tail protein	tail	A0A059T7Y4	Listeria_phage	100.0	4.0e-108
WP_014930131.1|1321932_1322265_+	hypothetical protein	NA	A0A059T7R2	Listeria_phage	97.3	1.1e-51
WP_014930132.1|1322480_1327412_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	96.5	0.0e+00
WP_014930258.1|1327399_1329049_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	98.7	0.0e+00
WP_014930259.1|1329064_1331359_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	94.4	0.0e+00
WP_031644619.1|1331348_1332443_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	87.9	2.2e-184
WP_012951557.1|1332490_1332793_+	hypothetical protein	NA	A0A059T5E6	Listeria_phage	93.0	1.7e-38
WP_012951558.1|1332792_1333050_+|holin	phage holin	holin	A8ATB7	Listeria_phage	69.0	3.2e-25
WP_014930134.1|1333049_1333892_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	81.6	9.5e-127
WP_012951560.1|1333995_1334994_+	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	44.8	3.9e-71
WP_003769913.1|1335208_1335415_-	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	82.8	1.3e-16
WP_002323245.1|1336124_1337297_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_101961280.1|1337351_1337570_+	hypothetical protein	NA	A8ATX0	Listeria_phage	82.8	1.8e-21
WP_009933528.1|1337566_1337758_+	hypothetical protein	NA	R4IBI5	Listeria_phage	88.9	8.9e-25
WP_010989715.1|1338251_1339610_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
1337870:1337886	attR	AATCCCTCTCAGGACGT	NA	NA	NA	NA
WP_010989716.1|1339651_1340245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009914084.1|1340398_1340806_-	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_009924169.1|1340970_1341570_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	41.0	5.8e-30
WP_003723543.1|1341601_1341862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010989717.1|1341985_1343398_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.8	8.3e-51
WP_003723545.1|1343422_1343686_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_003723546.1|1343853_1344330_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003723547.1|1344367_1344613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723548.1|1344609_1345815_-	MFS transporter	NA	NA	NA	NA	NA
WP_003723549.1|1346019_1346679_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723550.1|1346720_1346915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723551.1|1346981_1347830_-	YitT family protein	NA	NA	NA	NA	NA
WP_009931701.1|1348448_1349162_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_010989718.1|1349192_1350839_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_003723556.1|1350857_1352342_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_003723557.1|1352457_1352910_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_003723558.1|1352956_1353421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723559.1|1353609_1354530_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_009932313.1|1354549_1355797_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
WP_003723561.1|1355780_1356611_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
WP_003723562.1|1356746_1357886_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1357966_1358362_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1358512_1358728_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010989719.1|1358846_1359380_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1359397_1360063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1360324_1361263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1361377_1362661_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1362846_1364106_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723887.1|1364224_1364791_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723888.1|1364825_1365395_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1365496_1366039_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1366048_1366912_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1366908_1367694_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_010989720.1|1367827_1368688_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_009924617.1|1368959_1371038_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.7	1.4e-107
WP_010989721.1|1371100_1372405_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_009911635.1|1372687_1373590_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_014601431.1|1373610_1374150_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_010989722.1|1374163_1375573_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.7	4.9e-43
>prophage 5
NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	3016037	1506772	1517608	3016037	transposase	Streptococcus_phage(33.33%)	7	NA	NA
WP_003721911.1|1506772_1509004_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	43.4	2.5e-182
WP_003721912.1|1509080_1509827_+	pyruvate formate lyase-activating protein	NA	E5DI79	Enterobacter_phage	35.3	2.5e-06
WP_003721913.1|1509861_1510392_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003728466.1|1511360_1513496_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	64.5	1.6e-247
WP_003728467.1|1513495_1513855_-	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	50.0	3.1e-26
WP_003728468.1|1514134_1514689_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	53.4	7.0e-38
WP_003728469.1|1514692_1517608_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.7	1.9e-174
>prophage 6
NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	3016037	1922092	1930378	3016037		Synechococcus_phage(33.33%)	8	NA	NA
WP_003722243.1|1922092_1922659_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_009933235.1|1922655_1923705_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.0e-61
WP_010989807.1|1923723_1925151_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	31.9	8.1e-54
WP_010989808.1|1925135_1927355_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.2	2.0e-160
WP_003733240.1|1927347_1928031_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1928034_1928280_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_010989809.1|1928291_1929005_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	2.3e-41
WP_003733238.1|1929085_1930378_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 7
NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	3016037	2604618	2612462	3016037		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2604618_2605590_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2605597_2606566_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_010990001.1|2606567_2607443_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	3.2e-08
WP_010990002.1|2607550_2609281_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.0	1.3e-175
WP_009930954.1|2609322_2610384_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_009924988.1|2610400_2611384_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
WP_003722610.1|2611502_2612462_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
