assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002848425.1_ASM284842v1	NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	1	210279-210430	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,DEDDh	Unclear	CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA	NA|231aa|up_9|NZ_CP025442.1_197477_198170_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP025442.1_198166_199375_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP025442.1_200059_200368_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP025442.1_200487_200796_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP025442.1_201182_202556_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP025442.1_202606_203563_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP025442.1_203605_204319_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP025442.1_204589_205543_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP025442.1_205784_207374_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP025442.1_207704_209237_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP025442.1_211390_212260_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP025442.1_212331_212655_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP025442.1_212789_213251_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP025442.1_213301_213634_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP025442.1_213700_214375_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP025442.1_214451_215393_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP025442.1_215686_216310_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP025442.1_216399_216984_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP025442.1_217090_217651_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP025442.1_217765_221305_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_002848425.1_ASM284842v1	NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	2	504213-504797	1	CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|158aa|down_0|NZ_CP025442.1_505690_506164_+,NA|162aa|down_1|NZ_CP025442.1_506183_506669_+,NA|89aa|down_3|NZ_CP025442.1_507077_507344_+,NA|55aa|down_4|NZ_CP025442.1_507582_507747_+,NA|79aa|down_5|NZ_CP025442.1_507808_508045_-,NA|108aa|down_7|NZ_CP025442.1_510058_510382_+,NA|102aa|down_8|NZ_CP025442.1_510356_510662_+	NA|222aa|up_9|NZ_CP025442.1_489318_489984_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|252aa|up_8|NZ_CP025442.1_490004_490760_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_7|NZ_CP025442.1_490877_493037_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_6|NZ_CP025442.1_493033_494182_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_5|NZ_CP025442.1_494186_495134_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_4|NZ_CP025442.1_495289_496885_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_3|NZ_CP025442.1_497018_498302_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_2|NZ_CP025442.1_498302_499403_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_1|NZ_CP025442.1_499395_500946_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_0|NZ_CP025442.1_501765_503304_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|158aa|down_0|NZ_CP025442.1_505690_506164_+	NA	NA|162aa|down_1|NZ_CP025442.1_506183_506669_+	NA	NA|102aa|down_2|NZ_CP025442.1_506696_507002_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP025442.1_507077_507344_+	NA	NA|55aa|down_4|NZ_CP025442.1_507582_507747_+	NA	NA|79aa|down_5|NZ_CP025442.1_507808_508045_-	NA	NA|577aa|down_6|NZ_CP025442.1_508283_510014_+	pfam14280, DUF4365, Domain of unknown function (DUF4365)	NA|108aa|down_7|NZ_CP025442.1_510058_510382_+	NA	NA|102aa|down_8|NZ_CP025442.1_510356_510662_+	NA	NA|306aa|down_9|NZ_CP025442.1_510690_511608_+	pfam14253, AbiH, Bacteriophage abortive infection AbiH
GCF_002848425.1_ASM284842v1	NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	3	551092-551380	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,4,4	4	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA|133aa|up_5|NZ_CP025442.1_546081_546480_+,NA|193aa|down_0|NZ_CP025442.1_551639_552218_+	NA|217aa|up_9|NZ_CP025442.1_542144_542795_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP025442.1_542903_544964_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP025442.1_544967_545570_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP025442.1_545597_546065_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP025442.1_546081_546480_+	NA	NA|217aa|up_4|NZ_CP025442.1_546490_547141_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP025442.1_547137_548184_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP025442.1_548199_548493_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP025442.1_548507_549779_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP025442.1_549918_550854_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP025442.1_551639_552218_+	NA	NA|227aa|down_1|NZ_CP025442.1_552325_553006_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP025442.1_553030_553390_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP025442.1_553396_553855_-	pfam12802, MarR_2, MarR family	NA|606aa|down_4|NZ_CP025442.1_554236_556054_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP025442.1_556154_556586_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP025442.1_556632_558063_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP025442.1_558183_558999_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP025442.1_559279_559648_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP025442.1_559794_561210_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_002848425.1_ASM284842v1	NZ_CP025442	Listeria monocytogenes strain MF4562 chromosome, complete genome	4	2849874-2849984	3	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|74aa|down_2|NZ_CP025442.1_2850753_2850975_-,NA|52aa|down_4|NZ_CP025442.1_2852915_2853071_+,NA|214aa|down_6|NZ_CP025442.1_2854974_2855616_-	NA|330aa|up_9|NZ_CP025442.1_2841799_2842789_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP025442.1_2842810_2843407_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP025442.1_2843410_2843785_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP025442.1_2843890_2844742_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP025442.1_2844860_2845700_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP025442.1_2845820_2846663_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP025442.1_2846708_2846954_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP025442.1_2846968_2847565_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP025442.1_2847673_2847991_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP025442.1_2848020_2849760_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP025442.1_2850086_2850551_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP025442.1_2850568_2850751_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP025442.1_2850753_2850975_-	NA	NA|455aa|down_3|NZ_CP025442.1_2851109_2852474_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP025442.1_2852915_2853071_+	NA	NA|391aa|down_5|NZ_CP025442.1_2853531_2854704_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|214aa|down_6|NZ_CP025442.1_2854974_2855616_-	NA	NA|505aa|down_7|NZ_CP025442.1_2856313_2857828_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_8|NZ_CP025442.1_2857943_2858882_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_9|NZ_CP025442.1_2858924_2859872_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain
