assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002848385.1_ASM284838v1	NZ_CP025425	Enterococcus faecium strain SC4 chromosome, complete genome	1	2327691-2327800	1	CRISPRCasFinder	no		cas3,DEDDh,cas2,cas14j,DinG,csa3,RT	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas2,cas14j,DinG,csa3,RT,c2c10_CAS-V-U3	NA,NA	NA|75aa|up_9|NZ_CP025425.1_2315894_2316119_+	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|720aa|up_8|NZ_CP025425.1_2316277_2318437_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_7|NZ_CP025425.1_2318486_2319452_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_6|NZ_CP025425.1_2319540_2320680_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|234aa|up_5|NZ_CP025425.1_2321956_2322658_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP025425.1_2322891_2324424_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NZ_CP025425.1_2324614_2325817_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP025425.1_2325898_2326588_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP025425.1_2326693_2327062_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP025425.1_2327114_2327618_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP025425.1_2328027_2328717_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP025425.1_2328820_2329243_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP025425.1_2329585_2330254_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP025425.1_2330266_2331139_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP025425.1_2331229_2332249_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NZ_CP025425.1_2332421_2333309_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP025425.1_2333385_2333931_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP025425.1_2334031_2334202_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP025425.1_2334225_2334378_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP025425.1_2334539_2335184_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_002848385.1_ASM284838v1	NZ_CP025426	Enterococcus faecium strain SC4 plasmid p1, complete sequence	1	221150-221278	1	CRISPRCasFinder	no	cas14j	DEDDh,cas14j,RT	Unclear	GGTATGATTTTCATACCCTCTTGA	24	0	0	NA	NA	NA	2	2	TypeV	cas3,DEDDh,cas2,cas14j,DinG,csa3,RT,c2c10_CAS-V-U3	NA|275aa|up_8|NZ_CP025426.1_211788_212613_-,NA|70aa|up_4|NZ_CP025426.1_216137_216347_-,NA|80aa|up_3|NZ_CP025426.1_216413_216653_-,NA|111aa|up_0|NZ_CP025426.1_219509_219842_-,NA|65aa|down_0|NZ_CP025426.1_223057_223252_+,NA|312aa|down_5|NZ_CP025426.1_227017_227953_+	NA|704aa|up_9|NZ_CP025426.1_209388_211500_-	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|275aa|up_8|NZ_CP025426.1_211788_212613_-	NA	NA|252aa|up_7|NZ_CP025426.1_212609_213365_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|659aa|up_6|NZ_CP025426.1_213377_215354_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|224aa|up_5|NZ_CP025426.1_215406_216078_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|70aa|up_4|NZ_CP025426.1_216137_216347_-	NA	NA|80aa|up_3|NZ_CP025426.1_216413_216653_-	NA	NA|417aa|up_2|NZ_CP025426.1_217062_218313_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|114aa|up_1|NZ_CP025426.1_218549_218891_-	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|111aa|up_0|NZ_CP025426.1_219509_219842_-	NA	NA|65aa|down_0|NZ_CP025426.1_223057_223252_+	NA	cas14j|383aa|down_1|NZ_CP025426.1_223958_225107_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|135aa|down_2|NZ_CP025426.1_225123_225528_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|85aa|down_3|NZ_CP025426.1_225886_226141_+	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|106aa|down_4|NZ_CP025426.1_226141_226459_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|312aa|down_5|NZ_CP025426.1_227017_227953_+	NA	NA|285aa|down_6|NZ_CP025426.1_229036_229891_+	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain	NA|750aa|down_7|NZ_CP025426.1_229987_232237_+	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism]	NA|392aa|down_8|NZ_CP025426.1_232239_233415_+	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily	NA|88aa|down_9|NZ_CP025426.1_234559_234823_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system
