The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025520	Escherichia coli strain DH5alpha chromosome, complete genome	4605446	6709	22347	4605446	plate,integrase,portal,transposase,tail	Shigella_phage(27.78%)	24	5671:5684	24959:24972
5671:5684	attL	ATTCATCTTATTTT	NA	NA	NA	NA
WP_077626120.1|6709_6883_-|integrase	integrase	integrase	O21927	Phage_21	76.0	6.8e-16
WP_085947771.1|6967_8129_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
WP_000939945.1|9078_9324_-	excisionase-like protein from lambdoid prophage 14	NA	NA	NA	NA	NA
WP_011443584.1|9360_9672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010723095.1|9788_10130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001005353.1|10067_10376_-	hypothetical protein	NA	I6PDF6	Cronobacter_phage	80.0	3.8e-09
WP_000848748.1|10550_11225_-	LexA family transcriptional repressor	NA	U5P0T5	Shigella_phage	100.0	1.2e-132
WP_000649480.1|11315_11516_+	transcriptional regulator	NA	U5P445	Shigella_phage	98.5	1.9e-30
WP_000515837.1|11559_12117_+	protein YmfL	NA	S5FXP0	Shigella_phage	95.7	7.4e-96
WP_001250269.1|12292_12472_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
WP_000104929.1|12461_13829_+	GntR family transcriptional regulator	NA	A0A1C9IIA1	Salmonella_phage	99.2	5.1e-223
WP_000605606.1|13840_14023_+	hypothetical protein	NA	S5FXQ9	Shigella_phage	100.0	1.7e-25
WP_001350502.1|14022_14496_+|portal	phage portal protein	portal	A0A1B5FP95	Escherichia_phage	100.0	3.6e-75
WP_001350503.1|14422_15214_+|plate	baseplate J/gp47 family protein	plate	M1FQW3	Enterobacteria_phage	97.3	4.7e-144
WP_000383574.1|15204_15789_+	YmfQ family protein	NA	O22003	Shigella_phage	98.5	2.0e-112
WP_000548498.1|16577_17180_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	83.5	9.2e-92
WP_010723096.1|17151_17565_-|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	53.6	7.1e-27
WP_000905001.1|17973_18528_+	site-specific DNA recombinase	NA	A0A1S6L009	Salmonella_phage	88.3	2.8e-87
WP_000557907.1|18634_19468_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_000943927.1|19701_19866_+	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	96.3	4.2e-23
WP_001295666.1|19968_20292_-	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	65.4	3.0e-41
WP_032082692.1|20827_20938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000373101.1|20990_21395_-	DUF1398 domain-containing protein	NA	NA	NA	NA	NA
WP_000332303.1|21615_22347_-	DNA-binding transcriptional repressor BluR	NA	Q9EYF2	Enterobacteria_phage	50.5	2.7e-53
24959:24972	attR	ATTCATCTTATTTT	NA	NA	NA	NA
>prophage 2
NZ_CP025520	Escherichia coli strain DH5alpha chromosome, complete genome	4605446	118638	147542	4605446	lysis,integrase,portal,terminase,tail,head	Enterobacteria_phage(97.22%)	39	114383:114398	156687:156702
114383:114398	attL	TCTACCACAATCCACT	NA	NA	NA	NA
WP_000627155.1|118638_119832_+|integrase	site-specific integrase	integrase	K7PGY1	Enterobacteria_phage	100.0	1.3e-235
WP_024168593.1|120067_120307_-	DUF4060 family protein	NA	M9P0E0	Enterobacteria_phage	100.0	1.1e-37
WP_000148438.1|121191_121344_-	DUF1317 family protein	NA	NA	NA	NA	NA
WP_000831730.1|121340_121769_-	hypothetical protein	NA	M9NYX4	Enterobacteria_phage	100.0	9.5e-75
WP_000187057.1|121765_122446_-	YqaJ viral recombinase family protein	NA	M9NZE1	Enterobacteria_phage	100.0	1.3e-131
WP_000059964.1|122442_123360_-	recombinase RecT	NA	M9NZA6	Enterobacteria_phage	100.0	1.1e-171
WP_000995354.1|123369_123651_-	host nuclease inhibitor GamL	NA	M9NZI3	Enterobacteria_phage	100.0	1.3e-48
WP_000005775.1|123658_124627_-	hypothetical protein	NA	M9P0E1	Enterobacteria_phage	100.0	1.8e-97
WP_000448252.1|124731_125568_-	zf-TFIIB domain-containing protein	NA	M9NYX5	Enterobacteria_phage	100.0	6.2e-155
WP_000607102.1|125578_125788_-	cell division protein FtsZ	NA	M9NZE2	Enterobacteria_phage	100.0	4.7e-35
WP_001281305.1|125944_126154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032180615.1|126309_126603_-	hypothetical protein	NA	M9P0E2	Enterobacteria_phage	99.0	2.0e-47
WP_000362427.1|127163_127373_+	hypothetical protein	NA	G8C7T7	Escherichia_phage	87.5	7.0e-23
WP_000432054.1|127403_128270_-	hypothetical protein	NA	M9NYX6	Enterobacteria_phage	100.0	3.5e-153
WP_000244936.1|128406_129171_-	helix-turn-helix transcriptional regulator	NA	M9NZE3	Enterobacteria_phage	100.0	1.9e-134
WP_000608751.1|129234_129456_+	helix-turn-helix domain-containing protein	NA	M9NZA8	Enterobacteria_phage	100.0	3.5e-33
WP_000555791.1|129486_130029_+	hypothetical protein	NA	M9NZI6	Enterobacteria_phage	100.0	1.6e-95
WP_000072106.1|130114_131023_+	replication protein	NA	K7PGZ0	Enterobacteria_phage	100.0	1.2e-159
WP_000838083.1|131019_131709_+	hypothetical protein	NA	M9NYX7	Enterobacteria_phage	100.0	8.8e-131
WP_000586532.1|132712_133168_+	hypothetical protein	NA	K7P7B8	Enterobacteria_phage	100.0	5.7e-86
WP_000106777.1|133167_133338_+	NinE family protein	NA	K7P7K0	Enterobacteria_phage	100.0	1.1e-23
WP_000063208.1|133334_134003_+	serine/threonine protein phosphatase	NA	M9P0E4	Enterobacteria_phage	100.0	2.3e-131
WP_001231139.1|133995_134637_+	protein ninG	NA	M9NYX8	Enterobacteria_phage	100.0	2.4e-114
WP_048813386.1|134633_134840_+	hypothetical protein	NA	M9NZE6	Enterobacteria_phage	100.0	2.4e-36
WP_085903671.1|134836_134953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001047620.1|134952_135762_+	antitermination protein	NA	M9NZB0	Enterobacteria_phage	100.0	2.3e-154
WP_000286101.1|136240_136465_+	hypothetical protein	NA	M9NZI9	Enterobacteria_phage	100.0	1.9e-34
WP_001070143.1|136442_136937_+	lysozyme	NA	M9P0E5	Enterobacteria_phage	100.0	1.3e-91
WP_012305470.1|136933_137392_+|lysis	lysis protein	lysis	M9NYX9	Enterobacteria_phage	100.0	2.2e-77
WP_001064347.1|137590_138109_+	Rha family transcriptional regulator	NA	Q38450	Enterobacteria_phage	100.0	2.9e-94
WP_001446081.1|138180_138777_-	hypothetical protein	NA	M9NZJ1	Enterobacteria_phage	100.0	9.7e-110
WP_000509882.1|139167_139896_+	hypothetical protein	NA	M9NZE9	Enterobacteria_phage	100.0	8.7e-121
WP_000453624.1|140143_140689_+|terminase	terminase small subunit	terminase	E4WL18	Enterobacteria_phage	100.0	1.2e-95
WP_001027236.1|140663_142586_+|terminase	phage terminase large subunit family protein	terminase	E4WL19	Enterobacteria_phage	100.0	0.0e+00
WP_000235412.1|142585_142792_+|head,tail	head-tail joining protein	head,tail	E4WL20	Enterobacteria_phage	100.0	5.8e-30
WP_000701345.1|142788_144381_+|portal	phage portal protein	portal	E4WL21	Enterobacteria_phage	100.0	1.3e-310
WP_000929806.1|144361_145705_+	S49 family peptidase	NA	E4WL22	Enterobacteria_phage	100.0	1.3e-215
WP_001018610.1|145714_146047_+|head	head decoration protein	head	E4WL24	Enterobacteria_phage	100.0	9.0e-57
WP_000118199.1|146114_147542_+	cyanase	NA	K7PGW9	Enterobacteria_phage	99.7	2.3e-181
156687:156702	attR	AGTGGATTGTGGTAGA	NA	NA	NA	NA
>prophage 3
NZ_CP025520	Escherichia coli strain DH5alpha chromosome, complete genome	4605446	252318	294335	4605446	tRNA,lysis,integrase,transposase,tail	Escherichia_phage(46.88%)	43	257015:257033	285039:285057
WP_010723085.1|252318_253335_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	100.0	4.4e-187
WP_000605090.1|253607_253865_+	DUF2534 family protein	NA	NA	NA	NA	NA
WP_001262123.1|253914_254865_-	universal stress protein UspE	NA	NA	NA	NA	NA
WP_046613418.1|255016_255769_-	FNR family transcription factor	NA	NA	NA	NA	NA
WP_010723085.1|255868_256885_+|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	100.0	4.4e-187
257015:257033	attL	GCTTATTCGCACCTTCCCT	NA	NA	NA	NA
WP_000945011.1|257162_257678_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.8	1.1e-24
WP_000062973.1|257688_259215_-	p-aminobenzoyl-glutamate transporter	NA	NA	NA	NA	NA
WP_000444929.1|260696_262007_-	M20 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_046613434.1|262182_263091_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001046829.1|263420_263984_+	DNA endonuclease SmrA	NA	NA	NA	NA	NA
WP_000628058.1|264004_265237_-	diguanylate cyclase DgcM	NA	A0A127AWB9	Bacillus_phage	39.5	3.1e-17
WP_000387388.1|265491_266475_+	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_000123737.1|266952_268326_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
WP_001157406.1|268454_269390_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
WP_000040852.1|269441_270677_-|integrase	site-specific integrase	integrase	A0A0U2JGI6	Escherichia_phage	98.8	5.5e-240
WP_000079604.1|270678_270894_-	excisionase XisR	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
WP_000276809.1|270972_271182_-	double-strand break reduction protein RcbA	NA	A0A0U2QL97	Escherichia_phage	98.4	6.1e-27
WP_001317028.1|271174_271369_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	NA	A0A0U2QQP4	Escherichia_phage	96.9	5.8e-32
WP_000166319.1|271425_272235_-	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	8.8e-106
WP_000105143.1|272227_274828_-	exodeoxyribonuclease VIII	NA	A0A0U2I1R6	Escherichia_phage	63.5	5.1e-248
WP_000632297.1|274929_275205_-	protein RacC	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
WP_001352098.1|275279_275450_-	conserved protein, Rac prophage	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
WP_000560225.1|275449_275671_-	killing protein KilR	NA	A0A0U2RTC4	Escherichia_phage	97.3	4.9e-35
WP_046613436.1|276112_276601_+	superinfection exclusion protein B	NA	NA	NA	NA	NA
WP_001169151.1|276597_276753_-	YdaF family protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
WP_000948459.1|277206_277683_-	DNA-binding transcriptional repressor RacR	NA	A0A2D1GNH0	Pseudomonas_phage	53.4	2.2e-11
WP_000712069.1|277806_278103_+	toxin YdaS	NA	A0A0R6PH31	Moraxella_phage	44.9	9.6e-10
WP_000693797.1|278125_278548_+	phage protein	NA	A0A0U2RXZ9	Escherichia_phage	95.0	1.5e-69
WP_000899748.1|278560_279418_+	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	84.5	8.3e-70
WP_000788970.1|279424_280171_+	ATP-binding protein	NA	V5UQI5	Shigella_phage	78.9	3.8e-111
WP_000450663.1|280193_280754_+	DUF1627 domain-containing protein	NA	A0A0U2SAW4	Escherichia_phage	88.1	1.9e-67
WP_001228696.1|280841_281027_+|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	98.2	2.8e-15
WP_001097895.1|281223_282681_+	Trk system potassium uptake protein TrkG	NA	NA	NA	NA	NA
WP_001350510.1|282818_283082_+	ParB N-terminal domain-containing protein	NA	A0A0R6PD10	Moraxella_phage	56.1	6.3e-21
WP_000091628.1|283062_283422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_046613426.1|285187_286168_-|transposase	IS5-like element ISKpn26 family transposase	transposase	A0A077SK28	Escherichia_phage	98.8	4.4e-184
285039:285057	attR	AGGGAAGGTGCGAATAAGC	NA	NA	NA	NA
WP_071885698.1|286490_289853_+	short-chain fatty acid transporter	NA	X2KTY7	Enterobacteria_phage	36.4	8.1e-12
WP_001698950.1|289852_290428_+|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	94.8	2.5e-102
WP_000086527.1|290525_291116_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000836770.1|291432_291666_-	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	87.0	5.4e-32
WP_120795384.1|291734_291848_-	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_001300461.1|292626_293061_-	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.8	1.8e-28
WP_000837921.1|293201_294335_-	porin OmpN	NA	Q1MVN1	Enterobacteria_phage	58.5	1.1e-117
>prophage 4
NZ_CP025520	Escherichia coli strain DH5alpha chromosome, complete genome	4605446	486892	506103	4605446	lysis,tail	Enterobacteria_phage(40.91%)	35	NA	NA
WP_000527743.1|486892_488353_-	mannitol dehydrogenase family protein	NA	H8ZJP8	Ostreococcus_tauri_virus	29.6	4.3e-42
WP_000347482.1|488441_489725_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_120795384.1|490329_490443_+	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000836768.1|490511_490745_+	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_000078177.1|491061_491652_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000885611.1|491749_492325_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	95.3	6.5e-103
WP_001027733.1|492324_493287_-|tail	tail fiber protein	tail	K7PHC9	Enterobacteria_phage	70.9	4.1e-41
WP_000453612.1|493237_493807_-	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.3	1.5e-91
WP_001368374.1|494195_494429_+	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	84.1	2.5e-21
WP_000373090.1|494486_494897_+	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	79.4	2.5e-56
WP_001019606.1|495048_495222_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA	NA
WP_001309517.1|495393_495549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_120795388.1|495627_495693_-	Qin prophage; protein YnfR	NA	NA	NA	NA	NA
WP_071524604.1|495695_495884_-	cold-shock protein	NA	NA	NA	NA	NA
WP_000066495.1|495894_496107_-	cold shock protein CspI	NA	A0A1W6JNX5	Morganella_phage	74.3	1.2e-22
WP_001071769.1|496469_496967_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	29.5	2.9e-06
WP_001092971.1|496963_497497_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	93.2	6.4e-97
WP_000189916.1|497493_497805_-	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	64.6	2.0e-26
WP_000839590.1|497809_498025_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	94.4	1.1e-31
WP_000066484.1|498778_498994_-	cold shock-like protein CspB	NA	A0A1W6JNX5	Morganella_phage	76.5	3.4e-25
WP_000087756.1|499294_499507_+	cold shock-like protein CspF	NA	NA	NA	NA	NA
WP_120795389.1|499561_499651_+	Qin prophage; protein YnfS	NA	NA	NA	NA	NA
WP_001047135.1|499928_500681_-	antitermination protein	NA	A0A192Y5X6	Salmonella_phage	92.8	7.1e-134
WP_001265198.1|500694_501744_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	57.3	1.3e-112
WP_012304870.1|501745_502024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000980994.1|502090_502342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813254.1|502558_502714_-	type I toxin-antitoxin system toxin HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
WP_000323025.1|502785_503073_-	type II toxin-antitoxin system mRNA interferase RelE	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	66.0	1.4e-29
WP_000534858.1|503072_503312_-	type II toxin-antitoxin system antitoxin RelB	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	54.4	1.6e-18
WP_001326990.1|503336_503642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001301033.1|503844_504177_+	protein FlxA	NA	NA	NA	NA	NA
WP_011443592.1|504613_504763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000920568.1|505059_505290_-	dicB transcriptional regulator DicC	NA	NA	NA	NA	NA
WP_000448564.1|505373_505781_+	DNA-binding transcriptional dual regulator DicA	NA	K7PM82	Enterobacteria_phage	54.7	4.4e-13
WP_000379575.1|505947_506103_+	DUF1391 family protein	NA	M4QQ57	Salicola_phage	53.2	3.0e-07
>prophage 5
NZ_CP025520	Escherichia coli strain DH5alpha chromosome, complete genome	4605446	1324245	1335455	4605446	integrase,tail	Enterobacteria_phage(50.0%)	17	1322220:1322236	1339130:1339146
1322220:1322236	attL	TATTGGTATCGACAACC	NA	NA	NA	NA
WP_000368140.1|1324245_1325178_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	99.0	2.5e-165
WP_000958671.1|1325489_1326647_+|integrase	prophage integrase IntS	integrase	A5VW56	Enterobacteria_phage	100.0	5.7e-223
WP_000915541.1|1326799_1327162_+	GtrA family protein	NA	U5P0S6	Shigella_phage	88.3	1.0e-53
WP_000703651.1|1327158_1328079_+	glycosyltransferase family 2 protein	NA	M1FQW5	Enterobacteria_phage	89.9	4.2e-160
WP_001030215.1|1328075_1329407_+	hypothetical protein	NA	U5P0I5	Shigella_phage	36.7	6.8e-63
WP_047792215.1|1329441_1329723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106835.1|1330021_1330462_-|tail	tail fiber assembly protein	tail	A0A0F7LDZ0	Escherichia_phage	70.1	9.5e-54
WP_011443597.1|1330488_1331007_-	hypothetical protein	NA	M1FN94	Enterobacteria_phage	68.8	4.6e-39
WP_000066913.1|1331056_1331332_-	phage N-6-adenine-methyltransferase	NA	Q8SBE9	Shigella_phage	100.0	2.6e-49
WP_001393497.1|1331331_1331826_-	PerC family transcriptional regulator	NA	A0A0P0ZCF0	Stx2-converting_phage	98.1	1.2e-86
WP_000128175.1|1331822_1332191_-	hypothetical protein	NA	U5P0A0	Shigella_phage	99.2	1.3e-69
WP_000135673.1|1332548_1332911_+	hypothetical protein	NA	Q8SBF8	Shigella_phage	99.2	1.9e-60
WP_000081278.1|1332976_1333801_+	YfdQ family protein	NA	K7PJQ6	Enterobacteria_phage	99.3	7.8e-150
WP_000008183.1|1333928_1334465_+	5'-deoxynucleotidase	NA	K7PKJ9	Enterobacteria_phage	98.9	3.7e-100
WP_001242717.1|1334455_1334818_+	phage protein	NA	K7PH61	Enterobacteria_phage	99.1	2.0e-65
WP_000206809.1|1334817_1335123_+	hypothetical protein	NA	U5P0J0	Shigella_phage	96.0	2.2e-49
WP_001163428.1|1335254_1335455_+	response regulator inhibitor TorI	NA	K7P7V0	Enterobacteria_phage	100.0	2.4e-33
1339130:1339146	attR	TATTGGTATCGACAACC	NA	NA	NA	NA
>prophage 6
NZ_CP025520	Escherichia coli strain DH5alpha chromosome, complete genome	4605446	1709243	1716382	4605446		Escherichia_phage(83.33%)	6	NA	NA
WP_001272928.1|1709243_1711805_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
WP_001141337.1|1711910_1712567_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	4.7e-49
WP_001300386.1|1712617_1713385_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
WP_000848004.1|1713580_1714489_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	4.3e-117
WP_001393459.1|1714485_1715652_+	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	60.6	1.1e-120
WP_001278994.1|1715743_1716382_+	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
>prophage 7
NZ_CP025520	Escherichia coli strain DH5alpha chromosome, complete genome	4605446	3745483	3785085	4605446	transposase	Streptococcus_phage(16.67%)	41	NA	NA
WP_000006255.1|3745483_3745981_+|transposase	REP-associated tyrosine transposase RayT	transposase	NA	NA	NA	NA
WP_001334802.1|3746204_3747944_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
WP_001333407.1|3747903_3748674_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
WP_001226164.1|3748744_3749800_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000554758.1|3749851_3750145_+	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA	NA
WP_001263489.1|3750147_3750546_+	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA	NA
WP_001059892.1|3750555_3751008_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001295202.1|3751313_3751580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001326471.1|3751512_3752049_+	peptide chain release factor H	NA	NA	NA	NA	NA
WP_001292994.1|3752105_3753563_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
WP_001291990.1|3753823_3754282_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000189532.1|3754373_3755618_+	esterase FrsA	NA	NA	NA	NA	NA
WP_001339197.1|3755990_3757199_-|transposase	IS4-like element ISVsa5 family transposase	transposase	Q9E8P4	Bluetongue_virus	100.0	3.0e-235
WP_001352368.1|3758172_3759381_-|transposase	IS4-like element ISVsa5 family transposase	transposase	A0A0F7LAS3	uncultured_marine_virus	100.0	1.8e-235
WP_001285288.1|3760134_3761238_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
WP_000893278.1|3761249_3762503_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
WP_000854672.1|3763074_3763416_-	type IV toxin-antitoxin system toxin YkfI	NA	NA	NA	NA	NA
WP_000070395.1|3763436_3763754_-	type IV toxin-antitoxin system antitoxin YafW	NA	NA	NA	NA	NA
WP_000691994.1|3763772_3763994_-	DUF987 domain-containing protein	NA	NA	NA	NA	NA
WP_000811693.1|3764002_3764479_-	RadC family protein	NA	NA	NA	NA	NA
WP_000211838.1|3764494_3764953_-	antirestriction protein	NA	A9J566	Pseudomonas_phage	32.8	2.0e-14
WP_000194654.1|3765050_3765290_-	DUF905 domain-containing protein	NA	NA	NA	NA	NA
WP_001547765.1|3765366_3765834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000824223.1|3765856_3766300_-	lipoprotein, inner membrane; degP regulator; CP4-6 prophage	NA	NA	NA	NA	NA
WP_001548158.1|3766299_3766527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000197389.1|3766930_3767752_-	DUF945 domain-containing protein	NA	A0A2C9CX26	Yersinia_phage	39.4	7.2e-47
WP_001065553.1|3767843_3768707_-	GTPase family protein	NA	NA	NA	NA	NA
WP_000770246.1|3769035_3769929_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001254938.1|3770349_3771501_+|transposase	IS30-like element IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.9	8.9e-43
WP_010723085.1|3773847_3774864_-|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	100.0	4.4e-187
WP_074442156.1|3775071_3775431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000044314.1|3775427_3776378_+	acetaldehyde dehydrogenase	NA	G9E526	Ostreococcus_lucimarinus_virus	35.2	8.7e-36
WP_001013499.1|3776374_3777388_+	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	31.1	1.2e-43
WP_000107627.1|3777965_3779177_+	3-(3-hydroxy-phenyl)propionate transporter	NA	NA	NA	NA	NA
WP_001096705.1|3779278_3779818_+	DUF2058 domain-containing protein	NA	NA	NA	NA	NA
WP_000419081.1|3780041_3780875_-	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000842106.1|3780968_3782078_-	S-(hydroxymethyl)glutathione dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	28.6	8.9e-32
WP_001141271.1|3782112_3782388_-	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA	NA
WP_000596084.1|3782575_3783349_-	YaiO family outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_000012218.1|3783350_3783794_-	transferase	NA	NA	NA	NA	NA
WP_085947917.1|3783812_3785085_+|transposase	IS3-like element IS2 family transposase	transposase	Q9ZXG3	Shigella_phage	99.3	1.4e-177
>prophage 8
NZ_CP025520	Escherichia coli strain DH5alpha chromosome, complete genome	4605446	3920922	3977253	4605446	lysis,tRNA,protease,transposase,terminase	Enterobacteria_phage(43.75%)	51	NA	NA
WP_001295836.1|3920922_3921546_-|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	protease	NA	NA	NA	NA
WP_001110573.1|3921516_3922203_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	2.9e-33
WP_000561872.1|3922199_3924614_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000014739.1|3925044_3929325_+	RHS repeat protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	32.1	1.7e-22
WP_000877768.1|3929364_3929733_+	immunity protein	NA	NA	NA	NA	NA
WP_001320180.1|3930423_3930684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001157938.1|3931915_3933010_-|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_000460145.1|3933078_3934005_-	HTH-type transcriptional activator AllS	NA	NA	NA	NA	NA
WP_000776377.1|3934234_3934717_+	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_000141275.1|3934794_3935610_+	HTH-type transcriptional repressor AllR	NA	NA	NA	NA	NA
WP_001096881.1|3935699_3937481_+	glyoxylate carboligase	NA	E4WLQ6	Ostreococcus_tauri_virus	27.0	3.5e-38
WP_000943544.1|3937493_3938270_+	hydroxypyruvate isomerase	NA	NA	NA	NA	NA
WP_000765839.1|3938369_3939248_+	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA	NA
WP_000401100.1|3939416_3940871_+	putative allantoin permease	NA	NA	NA	NA	NA
WP_000006900.1|3940930_3942292_+	allantoinase AllB	NA	NA	NA	NA	NA
WP_001302767.1|3942348_3943650_+	uracil/xanthine transporter	NA	NA	NA	NA	NA
WP_001333621.1|3943671_3944817_+	glycerate 3-kinase	NA	W6LM47	Streptococcus_phage	41.6	9.1e-48
WP_000540997.1|3945044_3945830_-	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA	NA
WP_001310618.1|3945840_3947076_-	allantoate deiminase	NA	NA	NA	NA	NA
WP_000703900.1|3947097_3948147_-	ureidoglycolate dehydrogenase	NA	NA	NA	NA	NA
WP_000580829.1|3948463_3950131_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA	NA
WP_000495367.1|3950140_3951400_+	DUF1116 domain-containing protein	NA	NA	NA	NA	NA
WP_000152519.1|3951410_3952226_+	DUF2877 domain-containing protein	NA	NA	NA	NA	NA
WP_000855379.1|3952222_3953116_+	carbamate kinase	NA	NA	NA	NA	NA
WP_000815571.1|3953310_3954378_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001295318.1|3954374_3954884_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA	NA
WP_000212247.1|3955001_3955724_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_000255997.1|3955726_3956221_-	peptidylprolyl isomerase B	NA	NA	NA	NA	NA
WP_000912385.1|3956394_3957780_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	34.5	6.7e-45
WP_001143542.1|3957815_3958337_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000190288.1|3958444_3958657_-	ribosome-associated protein YbcJ	NA	NA	NA	NA	NA
WP_000729160.1|3958658_3959525_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.5	1.7e-30
WP_000776555.1|3959995_3960538_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA	NA
WP_000988364.1|3960757_3961450_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA	NA
WP_001333622.1|3961480_3964084_+	fimbrial biogenesis usher protein	NA	NA	NA	NA	NA
WP_001350487.1|3964062_3965103_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA	NA
WP_001255230.1|3965113_3965629_+	fimbria assembly protein	NA	NA	NA	NA	NA
WP_000805428.1|3965631_3966264_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA	NA
WP_010723085.1|3967758_3968775_-|transposase	IS5-like element IS5 family transposase	transposase	Q38213	Escherichia_phage	100.0	4.4e-187
WP_000839596.1|3969017_3969233_+|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_001135281.1|3969232_3969730_+	lysozyme	NA	M1FJA0	Enterobacteria_phage	98.2	1.1e-90
WP_001228697.1|3969946_3970129_+|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	78.3	1.4e-16
WP_000738500.1|3970219_3970513_-	serum resistance lipoprotein Bor	NA	A0A2R2X2B2	Escherichia_phage	97.9	5.7e-47
WP_000079503.1|3970803_3971214_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	98.5	1.2e-71
WP_001031427.1|3971499_3971706_+	hypothetical protein	NA	A0A0K2FJ18	Enterobacteria_phage	100.0	5.8e-30
WP_001421937.1|3971870_3972065_-	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	100.0	8.7e-28
WP_000453566.1|3972453_3972999_+	DNA-packaging protein	NA	A0A0K2FIG2	Enterobacteria_phage	98.3	4.0e-94
WP_001027248.1|3972973_3973717_+|terminase	phage terminase large subunit family protein	terminase	K7PMH7	Enterobacteria_phage	93.1	4.1e-73
WP_026089880.1|3973771_3974398_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000386784.1|3975300_3976050_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_001201845.1|3976299_3977253_-|protease	omptin family outer membrane protease OmpT	protease	NA	NA	NA	NA
>prophage 9
NZ_CP025520	Escherichia coli strain DH5alpha chromosome, complete genome	4605446	4594272	4601325	4605446	transposase	Shigella_phage(50.0%)	9	NA	NA
WP_085947771.1|4594272_4595434_+|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	3.1e-51
WP_000939945.1|4596383_4596629_-	excisionase-like protein from lambdoid prophage 14	NA	NA	NA	NA	NA
WP_011443584.1|4596665_4596977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010723095.1|4597093_4597435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001005353.1|4597372_4597681_-	hypothetical protein	NA	I6PDF6	Cronobacter_phage	80.0	3.8e-09
WP_000848748.1|4597854_4598529_-	LexA family transcriptional repressor	NA	U5P0T5	Shigella_phage	100.0	1.2e-132
WP_000649480.1|4598619_4598820_+	transcriptional regulator	NA	U5P445	Shigella_phage	98.5	1.9e-30
WP_001250269.1|4599595_4599775_+	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
WP_000605606.1|4601142_4601325_+	hypothetical protein	NA	S5FXQ9	Shigella_phage	100.0	1.7e-25
