assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002844355.1_ASM284435v1	NZ_CP021640	Streptococcus pyogenes strain JS12 chromosome, complete genome	1	785431-785598	1	CRISPRCasFinder	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,DEDDh,csa3	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36	0	0	NA	NA	II-A	2	2	TypeII-A,TypeII-B,TypeII-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,DEDDh,csa3	NA|214aa|up_8|NZ_CP021640.1_774894_775536_+,NA	NA|452aa|up_9|NZ_CP021640.1_773415_774771_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_CP021640.1_774894_775536_+	NA	NA|377aa|up_7|NZ_CP021640.1_775598_776729_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_CP021640.1_776738_777491_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_CP021640.1_777490_778255_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_CP021640.1_778254_778887_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1368aa|up_3|NZ_CP021640.1_779365_783469_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP021640.1_783468_784338_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP021640.1_784334_784676_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP021640.1_784665_785328_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_CP021640.1_786241_788074_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|517aa|down_1|NZ_CP021640.1_788260_789811_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|146aa|down_2|NZ_CP021640.1_789996_790434_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_CP021640.1_790563_791583_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_CP021640.1_791789_792215_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_CP021640.1_792233_792725_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_CP021640.1_792741_793551_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_CP021640.1_793547_794375_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_CP021640.1_794510_796160_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_CP021640.1_796163_796952_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_002844355.1_ASM284435v1	NZ_CP021640	Streptococcus pyogenes strain JS12 chromosome, complete genome	2	1654126-1654375	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,DEDDh,csa3	Orphan	CTTGGTGGTCAGCCTCTAATTTTTGGTGCTTCGCTTCTAG	40	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,DEDDh,csa3	NA,NA|84aa|down_3|NZ_CP021640.1_1660177_1660429_-	NA|543aa|up_9|NZ_CP021640.1_1639477_1641106_+	cd08518, PBP2_NikA_DppA_OppA_like_19, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|326aa|up_8|NZ_CP021640.1_1641218_1642196_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|up_7|NZ_CP021640.1_1642192_1643014_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|up_6|NZ_CP021640.1_1643025_1643829_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|209aa|up_5|NZ_CP021640.1_1643812_1644439_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|67aa|up_4|NZ_CP021640.1_1644520_1644721_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|824aa|up_3|NZ_CP021640.1_1644889_1647361_-	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|307aa|up_2|NZ_CP021640.1_1647373_1648294_-	cd01017, AdcA, Metal binding protein AdcA	NA|401aa|up_1|NZ_CP021640.1_1648545_1649748_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|1165aa|up_0|NZ_CP021640.1_1649844_1653339_-	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|434aa|down_0|NZ_CP021640.1_1655021_1656323_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|389aa|down_1|NZ_CP021640.1_1656546_1657713_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|534aa|down_2|NZ_CP021640.1_1657900_1659502_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|84aa|down_3|NZ_CP021640.1_1660177_1660429_-	NA	NA|543aa|down_4|NZ_CP021640.1_1660506_1662135_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|463aa|down_5|NZ_CP021640.1_1662235_1663624_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|down_6|NZ_CP021640.1_1663620_1664274_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_7|NZ_CP021640.1_1664367_1665585_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|225aa|down_8|NZ_CP021640.1_1665597_1666272_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|423aa|down_9|NZ_CP021640.1_1666258_1667527_-	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
GCF_002844355.1_ASM284435v1	NZ_CP021640	Streptococcus pyogenes strain JS12 chromosome, complete genome	3	1655713-1655812	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,DEDDh,csa3	Orphan	TTCGCAATTTTATCTTTTACTGTCT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,RT,DEDDh,csa3	NA,NA|84aa|down_2|NZ_CP021640.1_1660177_1660429_-,NA|95aa|down_9|NZ_CP021640.1_1667950_1668235_-	NA|326aa|up_9|NZ_CP021640.1_1641218_1642196_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|274aa|up_8|NZ_CP021640.1_1642192_1643014_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|268aa|up_7|NZ_CP021640.1_1643025_1643829_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|209aa|up_6|NZ_CP021640.1_1643812_1644439_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|67aa|up_5|NZ_CP021640.1_1644520_1644721_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|824aa|up_4|NZ_CP021640.1_1644889_1647361_-	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|307aa|up_3|NZ_CP021640.1_1647373_1648294_-	cd01017, AdcA, Metal binding protein AdcA	NA|401aa|up_2|NZ_CP021640.1_1648545_1649748_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|1165aa|up_1|NZ_CP021640.1_1649844_1653339_-	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	NA|380aa|up_0|NZ_CP021640.1_1653673_1654813_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|389aa|down_0|NZ_CP021640.1_1656546_1657713_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|534aa|down_1|NZ_CP021640.1_1657900_1659502_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|84aa|down_2|NZ_CP021640.1_1660177_1660429_-	NA	NA|543aa|down_3|NZ_CP021640.1_1660506_1662135_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|463aa|down_4|NZ_CP021640.1_1662235_1663624_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|218aa|down_5|NZ_CP021640.1_1663620_1664274_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_6|NZ_CP021640.1_1664367_1665585_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|225aa|down_7|NZ_CP021640.1_1665597_1666272_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|423aa|down_8|NZ_CP021640.1_1666258_1667527_-	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane]	NA|95aa|down_9|NZ_CP021640.1_1667950_1668235_-	NA
