assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002843115.1_ASM284311v1	NZ_CP025216	Streptococcus thermophilus strain DGCC 7710 chromosome, complete genome	1	636570-638716	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type II-A,Type II-B,Type II-C	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC,GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	36,36,36	0	0	NA	NA	NA:NA:NA	32,32,32	32	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|189aa|up_9|NZ_CP025216.1_621714_622281_+,NA|121aa|up_5|NZ_CP025216.1_628242_628605_+,NA	NA|189aa|up_9|NZ_CP025216.1_621714_622281_+	NA	NA|76aa|up_8|NZ_CP025216.1_623124_623352_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|131aa|up_7|NZ_CP025216.1_627096_627489_+	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|121aa|up_6|NZ_CP025216.1_627485_627848_+	TIGR02328, TIGR02328, conserved hypothetical protein	NA|121aa|up_5|NZ_CP025216.1_628242_628605_+	NA	NA|204aa|up_4|NZ_CP025216.1_629811_630423_+	pfam09911, DUF2140, Uncharacterized protein conserved in bacteria (DUF2140)	cas9|1122aa|up_3|NZ_CP025216.1_630678_634044_+	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9	cas1|304aa|up_2|NZ_CP025216.1_634220_635132_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|108aa|up_1|NZ_CP025216.1_635133_635457_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|351aa|up_0|NZ_CP025216.1_635453_636506_+	pfam16813, Cas_St_Csn2, CRISPR-associated protein Csn2 subfamily St	NA|272aa|down_0|NZ_CP025216.1_638757_639573_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|301aa|down_1|NZ_CP025216.1_639572_640475_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|711aa|down_2|NZ_CP025216.1_640838_642971_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|147aa|down_3|NZ_CP025216.1_642957_643398_+	PRK04351, PRK04351, SprT family protein	NA|88aa|down_4|NZ_CP025216.1_643463_643727_+	COG1983, PspC, Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]	NA|310aa|down_5|NZ_CP025216.1_643856_644786_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|264aa|down_6|NZ_CP025216.1_644785_645577_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|133aa|down_7|NZ_CP025216.1_645699_646098_+	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]	NA|147aa|down_8|NZ_CP025216.1_646110_646551_+	pfam12732, YtxH, YtxH-like protein	NA|99aa|down_9|NZ_CP025216.1_646571_646868_-	pfam11674, DUF3270, Protein of unknown function (DUF3270)
GCF_002843115.1_ASM284311v1	NZ_CP025216	Streptococcus thermophilus strain DGCC 7710 chromosome, complete genome	2	887984-888242	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type III-B,Type III-C,Type III-A,Type III-D	GATATAAACCTAATTACCTCGAGAGGGGACGGAAACCC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC,GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC	38,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	2,3,3	3	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|85aa|up_9|NZ_CP025216.1_875823_876078_+,NA|77aa|down_9|NZ_CP025216.1_900049_900280_+	NA|85aa|up_9|NZ_CP025216.1_875823_876078_+	NA	NA|255aa|up_8|NZ_CP025216.1_876873_877638_+	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|212aa|up_7|NZ_CP025216.1_877699_878335_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|89aa|up_6|NZ_CP025216.1_879303_879570_-	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|553aa|up_5|NZ_CP025216.1_881261_882920_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|183aa|up_4|NZ_CP025216.1_883852_884401_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|268aa|up_3|NZ_CP025216.1_884641_885445_+	PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	NA|316aa|up_2|NZ_CP025216.1_885463_886411_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	cas1|335aa|up_1|NZ_CP025216.1_886549_887554_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|110aa|up_0|NZ_CP025216.1_887553_887883_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|244aa|down_0|NZ_CP025216.1_888371_889103_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|759aa|down_1|NZ_CP025216.1_889083_891360_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|127aa|down_2|NZ_CP025216.1_891363_891744_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|221aa|down_3|NZ_CP025216.1_891743_892406_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|300aa|down_4|NZ_CP025216.1_892407_893307_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|358aa|down_5|NZ_CP025216.1_893309_894383_+	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|232aa|down_6|NZ_CP025216.1_895378_896074_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|210aa|down_7|NZ_CP025216.1_896163_896793_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|484aa|down_8|NZ_CP025216.1_897490_898942_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|77aa|down_9|NZ_CP025216.1_900049_900280_+	NA
GCF_002843115.1_ASM284311v1	NZ_CP025216	Streptococcus thermophilus strain DGCC 7710 chromosome, complete genome	3	957897-958659	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type I-E	GGATCACCCCCGCGTGTGCGGGAAAAAC,GGATCACCCCCGCGTGTGCGGGAAAAAC,GGATCACCCCCGCGTGTGCGGGAAAAAC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	12,12,12	12	TypeI-E	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|33aa|up_5|NZ_CP025216.1_944571_944670_-,NA	NA|349aa|up_9|NZ_CP025216.1_940479_941526_-	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|252aa|up_8|NZ_CP025216.1_941537_942293_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|323aa|up_7|NZ_CP025216.1_942289_943258_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|318aa|up_6|NZ_CP025216.1_943254_944208_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|33aa|up_5|NZ_CP025216.1_944571_944670_-	NA	NA|90aa|up_4|NZ_CP025216.1_944706_944976_-	pfam18033, SpuA_C, SpuA C-terminal	NA|585aa|up_3|NZ_CP025216.1_949446_951201_-	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|463aa|up_2|NZ_CP025216.1_951371_952760_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|333aa|up_1|NZ_CP025216.1_952917_953916_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|324aa|up_0|NZ_CP025216.1_953940_954912_-	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	DEDDh|302aa|down_0|NZ_CP025216.1_958679_959585_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|314aa|down_1|NZ_CP025216.1_959586_960528_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|213aa|down_2|NZ_CP025216.1_960531_961170_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|242aa|down_3|NZ_CP025216.1_961174_961900_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|356aa|down_4|NZ_CP025216.1_961913_962981_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|198aa|down_5|NZ_CP025216.1_962970_963564_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|556aa|down_6|NZ_CP025216.1_963573_965241_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|927aa|down_7|NZ_CP025216.1_965227_968008_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|648aa|down_8|NZ_CP025216.1_968304_970248_-	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|423aa|down_9|NZ_CP025216.1_970322_971591_-	PRK09357, pyrC, dihydroorotase; Validated
GCF_002843115.1_ASM284311v1	NZ_CP025216	Streptococcus thermophilus strain DGCC 7710 chromosome, complete genome	4	1371965-1372792	4,4,4	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type II-A,Type II-B,Type II-C	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	12,12,12	12	TypeII-A,TypeII-B,TypeII-C	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|66aa|up_7|NZ_CP025216.1_1365675_1365873_-,NA|148aa|up_4|NZ_CP025216.1_1368757_1369201_-,NA|80aa|up_0|NZ_CP025216.1_1371641_1371881_-,NA	NA|737aa|up_9|NZ_CP025216.1_1362653_1364864_+	cd13619, PBP2_GlnP, Glutamine-binding domain of ABC transporter, a member of the type 2 periplasmic binding fold protein superfamily	NA|247aa|up_8|NZ_CP025216.1_1364863_1365604_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|66aa|up_7|NZ_CP025216.1_1365675_1365873_-	NA	NA|438aa|up_6|NZ_CP025216.1_1366039_1367353_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|43aa|up_5|NZ_CP025216.1_1367446_1367575_-	pfam13253, DUF4044, Protein of unknown function (DUF4044)	NA|148aa|up_4|NZ_CP025216.1_1368757_1369201_-	NA	NA|128aa|up_3|NZ_CP025216.1_1369231_1369615_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|81aa|up_2|NZ_CP025216.1_1370303_1370546_+	COG2182, MalE, Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]	NA|297aa|up_1|NZ_CP025216.1_1370713_1371604_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|80aa|up_0|NZ_CP025216.1_1371641_1371881_-	NA	csn2|220aa|down_0|NZ_CP025216.1_1373113_1373773_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|115aa|down_1|NZ_CP025216.1_1373762_1374107_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NZ_CP025216.1_1374103_1374973_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1389aa|down_3|NZ_CP025216.1_1374972_1379139_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|216aa|down_4|NZ_CP025216.1_1379471_1380119_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|575aa|down_5|NZ_CP025216.1_1380230_1381955_-	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|651aa|down_6|NZ_CP025216.1_1382051_1384004_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|202aa|down_7|NZ_CP025216.1_1384004_1384610_-	cd07523, HAD_YsbA-like, uncharacterized family of the haloacid dehalogenase-like superfamily, similar to the uncharacterized Lactococcus lactis YsbA	NA|232aa|down_8|NZ_CP025216.1_1384650_1385346_-	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]	NA|125aa|down_9|NZ_CP025216.1_1385338_1385713_-	pfam03788, LrgA, LrgA family
GCF_002843115.1_ASM284311v1	NZ_CP025216	Streptococcus thermophilus strain DGCC 7710 chromosome, complete genome	5	1588217-1588308	5	CRISPRCasFinder	no	cas3	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Unclear	CTTTTCTTTACGATATCAATTTTAACATCTTT	32	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,cas9,cas1,cas2,csn2,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|87aa|up_3|NZ_CP025216.1_1583832_1584093_-,NA|143aa|down_7|NZ_CP025216.1_1594210_1594639_-	cas3|673aa|up_9|NZ_CP025216.1_1575282_1577301_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|368aa|up_8|NZ_CP025216.1_1577429_1578533_-	PRK00053, alr, alanine racemase; Reviewed	NA|120aa|up_7|NZ_CP025216.1_1578553_1578913_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|344aa|up_6|NZ_CP025216.1_1578916_1579948_-	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|344aa|up_5|NZ_CP025216.1_1580045_1581077_-	COG0722, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]	NA|850aa|up_4|NZ_CP025216.1_1581100_1583650_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|87aa|up_3|NZ_CP025216.1_1583832_1584093_-	NA	NA|316aa|up_2|NZ_CP025216.1_1584179_1585127_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|298aa|up_1|NZ_CP025216.1_1585192_1586086_-	pfam00480, ROK, ROK family	NA|634aa|up_0|NZ_CP025216.1_1586270_1588172_-	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component	NA|481aa|down_0|NZ_CP025216.1_1588420_1589863_+	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase	NA|322aa|down_1|NZ_CP025216.1_1589871_1590837_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|145aa|down_2|NZ_CP025216.1_1590926_1591361_-	PRK00202, nusB, transcription antitermination factor NusB	NA|130aa|down_3|NZ_CP025216.1_1591353_1591743_-	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|187aa|down_4|NZ_CP025216.1_1591813_1592374_-	PRK00529, PRK00529, elongation factor P; Validated	NA|152aa|down_5|NZ_CP025216.1_1592486_1592942_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|354aa|down_6|NZ_CP025216.1_1592960_1594022_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|143aa|down_7|NZ_CP025216.1_1594210_1594639_-	NA	NA|198aa|down_8|NZ_CP025216.1_1594683_1595277_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|130aa|down_9|NZ_CP025216.1_1595245_1595635_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
