assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838565.1_ASM283856v1	NZ_CP021556	Bifidobacterium breve strain 139W423 chromosome, complete genome	1	152221-152557	1	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	DEDDh,cas3,c2c9_V-U4,WYL	NA,NA|66aa|down_5|NZ_CP021556.1_160685_160883_+	NA|312aa|up_9|NZ_CP021556.1_138947_139883_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NZ_CP021556.1_139945_141013_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NZ_CP021556.1_141180_142467_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NZ_CP021556.1_142490_144074_+	cd01031, EriC, ClC chloride channel EriC	NA|355aa|up_5|NZ_CP021556.1_144261_145326_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|363aa|up_4|NZ_CP021556.1_144632_145721_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NZ_CP021556.1_145994_147080_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_2|NZ_CP021556.1_147506_149033_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP021556.1_149237_150872_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP021556.1_150941_151994_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP021556.1_152979_154347_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021556.1_154740_155793_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP021556.1_156220_157273_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|605aa|down_3|NZ_CP021556.1_157458_159273_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_4|NZ_CP021556.1_159544_160576_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|66aa|down_5|NZ_CP021556.1_160685_160883_+	NA	NA|1469aa|down_6|NZ_CP021556.1_161482_165889_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|612aa|down_7|NZ_CP021556.1_165993_167829_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_8|NZ_CP021556.1_168085_169045_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|739aa|down_9|NZ_CP021556.1_169348_171565_-	PRK14507, PRK14507, malto-oligosyltrehalose synthase
GCF_002838565.1_ASM283856v1	NZ_CP021556	Bifidobacterium breve strain 139W423 chromosome, complete genome	2	748428-748501	2	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL	Orphan	TGGGGACTGCTCAATCTACCGAC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,WYL	NA,NA|77aa|down_5|NZ_CP021556.1_755620_755851_-	NA|914aa|up_9|NZ_CP021556.1_734741_737483_+	pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59	NA|528aa|up_8|NZ_CP021556.1_737516_739100_+	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|481aa|up_7|NZ_CP021556.1_739164_740607_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|174aa|up_6|NZ_CP021556.1_740659_741181_-	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|416aa|up_5|NZ_CP021556.1_741254_742502_-	PRK15072, PRK15072, D-galactonate dehydratase family protein	NA|465aa|up_4|NZ_CP021556.1_742600_743995_-	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]	NA|476aa|up_3|NZ_CP021556.1_744030_745458_-	PRK02925, PRK02925, glucuronate isomerase; Reviewed	NA|131aa|up_2|NZ_CP021556.1_745488_745881_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|338aa|up_1|NZ_CP021556.1_746110_747124_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|334aa|up_0|NZ_CP021556.1_747268_748270_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|476aa|down_0|NZ_CP021556.1_748564_749992_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter	NA|453aa|down_1|NZ_CP021556.1_750179_751538_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|429aa|down_2|NZ_CP021556.1_751577_752864_+	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|701aa|down_3|NZ_CP021556.1_753050_755153_+	PRK05667, dnaG, DNA primase; Validated	NA|141aa|down_4|NZ_CP021556.1_755201_755624_-	pfam13470, PIN_3, PIN domain	NA|77aa|down_5|NZ_CP021556.1_755620_755851_-	NA	NA|292aa|down_6|NZ_CP021556.1_756061_756937_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|213aa|down_7|NZ_CP021556.1_756963_757602_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|508aa|down_8|NZ_CP021556.1_757659_759183_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|393aa|down_9|NZ_CP021556.1_759263_760442_+	cd01117, YbiR_permease, Putative anion permease YbiR
GCF_002838565.1_ASM283856v1	NZ_CP021556	Bifidobacterium breve strain 139W423 chromosome, complete genome	3	1784958-1785733	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas3,c2c9_V-U4,WYL	Orphan	ATTTCAATCCACGCTCCCCGGATGGGGAGCGACA,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	34,33,33	2	2	1785599-1785632|1785598-1785632	NZ_CP021556.1_422019-422052|NZ_CP021556.1_422018-422052	I-C:I-C:I-C	11,11,10	11	Orphan	DEDDh,cas3,c2c9_V-U4,WYL	NA,NA|122aa|down_8|NZ_CP021556.1_1796641_1797007_-,NA|46aa|down_9|NZ_CP021556.1_1797019_1797157_+	NA|187aa|up_9|NZ_CP021556.1_1771633_1772194_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP021556.1_1772253_1773828_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP021556.1_1773881_1774577_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP021556.1_1774597_1775350_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP021556.1_1775397_1777707_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP021556.1_1777951_1778656_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP021556.1_1778794_1779808_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP021556.1_1780102_1781965_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP021556.1_1782131_1782416_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP021556.1_1782701_1783922_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|1103aa|down_0|NZ_CP021556.1_1785863_1789172_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|322aa|down_1|NZ_CP021556.1_1789844_1790810_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|132aa|down_2|NZ_CP021556.1_1790885_1791281_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|316aa|down_3|NZ_CP021556.1_1791412_1792360_-	cd06323, PBP1_ribose_binding, periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs	NA|330aa|down_4|NZ_CP021556.1_1792436_1793426_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|507aa|down_5|NZ_CP021556.1_1793440_1794961_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|340aa|down_6|NZ_CP021556.1_1795220_1796240_-	cd06299, PBP1_LacI-like, ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum produces significant amounts of L-glutamate directly from cheap sugar and ammonia	NA|83aa|down_7|NZ_CP021556.1_1796384_1796633_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|122aa|down_8|NZ_CP021556.1_1796641_1797007_-	NA	NA|46aa|down_9|NZ_CP021556.1_1797019_1797157_+	NA
GCF_002838565.1_ASM283856v1	NZ_CP021556	Bifidobacterium breve strain 139W423 chromosome, complete genome	4	2295023-2295099	4	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,WYL	NA|71aa|up_5|NZ_CP021556.1_2287466_2287679_+,NA	NA|520aa|up_9|NZ_CP021556.1_2280558_2282118_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|393aa|up_8|NZ_CP021556.1_2282142_2283321_-	cd06316, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems	NA|494aa|up_7|NZ_CP021556.1_2284704_2286186_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|262aa|up_6|NZ_CP021556.1_2286188_2286974_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|71aa|up_5|NZ_CP021556.1_2287466_2287679_+	NA	NA|208aa|up_4|NZ_CP021556.1_2287635_2288259_-	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	NA|145aa|up_3|NZ_CP021556.1_2287994_2288429_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|508aa|up_2|NZ_CP021556.1_2288501_2290025_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021556.1_2290278_2294037_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021556.1_2294046_2294748_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021556.1_2295229_2296702_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021556.1_2296753_2297359_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021556.1_2297509_2298352_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021556.1_2298351_2299206_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021556.1_2299576_2300593_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021556.1_2300798_2302127_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021556.1_2302547_2303246_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021556.1_2303332_2303710_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|177aa|down_8|NZ_CP021556.1_2303805_2304336_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|77aa|down_9|NZ_CP021556.1_2304342_2304573_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA
