assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838545.1_ASM283854v1	NZ_CP021555	Bifidobacterium breve strain 082W48 chromosome, complete genome	1	149557-149893	1	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	DEDDh,cas3,c2c9_V-U4,WYL	NA|53aa|up_4|NZ_CP021555.1_143097_143256_+,NA	NA|356aa|up_9|NZ_CP021555.1_137302_138370_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_8|NZ_CP021555.1_138537_139824_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_7|NZ_CP021555.1_139847_141431_+	cd01031, EriC, ClC chloride channel EriC	NA|364aa|up_6|NZ_CP021555.1_141567_142659_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|356aa|up_5|NZ_CP021555.1_141986_143054_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|53aa|up_4|NZ_CP021555.1_143097_143256_+	NA	NA|362aa|up_3|NZ_CP021555.1_143328_144414_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_2|NZ_CP021555.1_144840_146367_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP021555.1_146571_148206_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP021555.1_148275_149328_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP021555.1_150315_151683_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021555.1_152077_153130_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|335aa|down_2|NZ_CP021555.1_153399_154404_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|374aa|down_3|NZ_CP021555.1_155971_157093_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|316aa|down_4|NZ_CP021555.1_157100_158048_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|467aa|down_5|NZ_CP021555.1_158154_159555_+	TIGR03356, BGL, beta-galactosidase	NA|351aa|down_6|NZ_CP021555.1_159819_160872_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|605aa|down_7|NZ_CP021555.1_161058_162873_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_8|NZ_CP021555.1_163144_164176_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1471aa|down_9|NZ_CP021555.1_165083_169496_+	pfam17802, SpaA, Prealbumin-like fold domain
GCF_002838545.1_ASM283854v1	NZ_CP021555	Bifidobacterium breve strain 082W48 chromosome, complete genome	2	450942-451246	2	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL	Orphan	CGTCCGCGTCGCCGTCGCTCCGA	23	0	0	NA	NA	NA	5	5	Orphan	DEDDh,cas3,c2c9_V-U4,WYL	NA|229aa|up_1|NZ_CP021555.1_447294_447981_+,NA	NA|185aa|up_9|NZ_CP021555.1_432643_433198_+	pfam13586, DDE_Tnp_1_2, Transposase DDE domain	NA|222aa|up_8|NZ_CP021555.1_433210_433876_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|446aa|up_7|NZ_CP021555.1_433947_435285_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|179aa|up_6|NZ_CP021555.1_435568_436105_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|145aa|up_5|NZ_CP021555.1_436427_436862_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|233aa|up_4|NZ_CP021555.1_437546_438245_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|1243aa|up_3|NZ_CP021555.1_439948_443677_+	pfam05738, Cna_B, Cna protein B-type domain	NA|516aa|up_2|NZ_CP021555.1_443884_445432_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|229aa|up_1|NZ_CP021555.1_447294_447981_+	NA	NA|90aa|up_0|NZ_CP021555.1_448110_448380_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|237aa|down_0|NZ_CP021555.1_451801_452512_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|301aa|down_1|NZ_CP021555.1_452646_453549_-	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|193aa|down_2|NZ_CP021555.1_454010_454589_+	pfam04011, LemA, LemA family	NA|752aa|down_3|NZ_CP021555.1_454654_456910_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|81aa|down_4|NZ_CP021555.1_456909_457152_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|288aa|down_5|NZ_CP021555.1_459351_460215_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|352aa|down_6|NZ_CP021555.1_460482_461538_+	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|205aa|down_7|NZ_CP021555.1_461611_462226_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|78aa|down_8|NZ_CP021555.1_462248_462482_-	PRK02821, PRK02821, RNA-binding protein	NA|158aa|down_9|NZ_CP021555.1_462505_462979_-	PRK14520, rpsP, 30S ribosomal protein S16; Provisional
GCF_002838545.1_ASM283854v1	NZ_CP021555	Bifidobacterium breve strain 082W48 chromosome, complete genome	3	1221832-1221933	3	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL	Orphan	GTTTGCTTCGGTTTTGCTTCATGGTTTGCTT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,WYL	NA|375aa|up_9|NZ_CP021555.1_1214937_1216062_-,NA|179aa|up_8|NZ_CP021555.1_1216054_1216591_-,NA|68aa|up_7|NZ_CP021555.1_1217647_1217851_+,NA|259aa|up_6|NZ_CP021555.1_1217905_1218682_-,NA|95aa|up_5|NZ_CP021555.1_1218934_1219219_-,NA|107aa|up_4|NZ_CP021555.1_1219331_1219652_-,NA|65aa|up_3|NZ_CP021555.1_1219644_1219839_-,NA|70aa|up_1|NZ_CP021555.1_1220562_1220772_-,NA|135aa|up_0|NZ_CP021555.1_1220796_1221201_-,NA|134aa|down_1|NZ_CP021555.1_1223897_1224299_-,NA|90aa|down_3|NZ_CP021555.1_1224886_1225156_-,NA|88aa|down_4|NZ_CP021555.1_1225170_1225434_-,NA|82aa|down_5|NZ_CP021555.1_1225689_1225935_-,NA|152aa|down_6|NZ_CP021555.1_1226021_1226477_+,NA|206aa|down_7|NZ_CP021555.1_1226643_1227261_+	NA|375aa|up_9|NZ_CP021555.1_1214937_1216062_-	NA	NA|179aa|up_8|NZ_CP021555.1_1216054_1216591_-	NA	NA|68aa|up_7|NZ_CP021555.1_1217647_1217851_+	NA	NA|259aa|up_6|NZ_CP021555.1_1217905_1218682_-	NA	NA|95aa|up_5|NZ_CP021555.1_1218934_1219219_-	NA	NA|107aa|up_4|NZ_CP021555.1_1219331_1219652_-	NA	NA|65aa|up_3|NZ_CP021555.1_1219644_1219839_-	NA	NA|196aa|up_2|NZ_CP021555.1_1219978_1220566_-	cd06135, Orn, DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins	NA|70aa|up_1|NZ_CP021555.1_1220562_1220772_-	NA	NA|135aa|up_0|NZ_CP021555.1_1220796_1221201_-	NA	NA|473aa|down_0|NZ_CP021555.1_1222346_1223765_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|134aa|down_1|NZ_CP021555.1_1223897_1224299_-	NA	NA|192aa|down_2|NZ_CP021555.1_1224308_1224884_-	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional	NA|90aa|down_3|NZ_CP021555.1_1224886_1225156_-	NA	NA|88aa|down_4|NZ_CP021555.1_1225170_1225434_-	NA	NA|82aa|down_5|NZ_CP021555.1_1225689_1225935_-	NA	NA|152aa|down_6|NZ_CP021555.1_1226021_1226477_+	NA	NA|206aa|down_7|NZ_CP021555.1_1226643_1227261_+	NA	NA|85aa|down_8|NZ_CP021555.1_1227468_1227723_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|138aa|down_9|NZ_CP021555.1_1227837_1228251_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_002838545.1_ASM283854v1	NZ_CP021555	Bifidobacterium breve strain 082W48 chromosome, complete genome	4	2180140-2180216	4	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,WYL	NA|90aa|up_9|NZ_CP021555.1_2163617_2163887_+,NA	NA|90aa|up_9|NZ_CP021555.1_2163617_2163887_+	NA	NA|350aa|up_8|NZ_CP021555.1_2164006_2165056_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP021555.1_2165685_2167104_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP021555.1_2167208_2168150_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP021555.1_2168158_2169988_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP021555.1_2170119_2171988_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP021555.1_2172171_2172693_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP021555.1_2173618_2175142_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021555.1_2175394_2179153_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021555.1_2179162_2179864_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021555.1_2180346_2181819_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021555.1_2181870_2182476_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021555.1_2182626_2183469_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021555.1_2183468_2184323_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021555.1_2184693_2185710_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021555.1_2185917_2187246_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021555.1_2187666_2188365_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021555.1_2188451_2188829_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|916aa|down_8|NZ_CP021555.1_2189857_2192605_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|780aa|down_9|NZ_CP021555.1_2192601_2194941_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
