assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838525.1_ASM283852v1	NZ_CP021557	Bifidobacterium breve strain 180W83 chromosome, complete genome	1	1189383-1189561	1	CRISPRCasFinder	no		DEDDh,cas3,WYL	Orphan	CCGGTTTTCGGGTCGATGGTGGC	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL	NA|64aa|up_9|NZ_CP021557.1_1179411_1179603_+,NA|230aa|up_7|NZ_CP021557.1_1180575_1181265_-,NA|123aa|up_5|NZ_CP021557.1_1181734_1182103_-,NA|99aa|up_4|NZ_CP021557.1_1182132_1182429_-,NA|403aa|up_2|NZ_CP021557.1_1185691_1186900_-,NA|315aa|up_1|NZ_CP021557.1_1186899_1187844_-,NA|299aa|up_0|NZ_CP021557.1_1187903_1188800_-,NA|99aa|down_0|NZ_CP021557.1_1192151_1192448_-,NA|165aa|down_1|NZ_CP021557.1_1192519_1193014_-,NA|178aa|down_2|NZ_CP021557.1_1193189_1193723_-,NA|139aa|down_3|NZ_CP021557.1_1193795_1194212_-,NA|130aa|down_4|NZ_CP021557.1_1194208_1194598_-,NA|141aa|down_5|NZ_CP021557.1_1194599_1195022_-,NA|195aa|down_6|NZ_CP021557.1_1195018_1195603_-,NA|205aa|down_8|NZ_CP021557.1_1196541_1197156_-,NA|387aa|down_9|NZ_CP021557.1_1197179_1198340_-	NA|64aa|up_9|NZ_CP021557.1_1179411_1179603_+	NA	NA|290aa|up_8|NZ_CP021557.1_1179627_1180497_+	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|230aa|up_7|NZ_CP021557.1_1180575_1181265_-	NA	NA|146aa|up_6|NZ_CP021557.1_1181261_1181699_-	pfam04688, Holin_SPP1, SPP1 phage holin	NA|123aa|up_5|NZ_CP021557.1_1181734_1182103_-	NA	NA|99aa|up_4|NZ_CP021557.1_1182132_1182429_-	NA	NA|1078aa|up_3|NZ_CP021557.1_1182447_1185681_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|403aa|up_2|NZ_CP021557.1_1185691_1186900_-	NA	NA|315aa|up_1|NZ_CP021557.1_1186899_1187844_-	NA	NA|299aa|up_0|NZ_CP021557.1_1187903_1188800_-	NA	NA|99aa|down_0|NZ_CP021557.1_1192151_1192448_-	NA	NA|165aa|down_1|NZ_CP021557.1_1192519_1193014_-	NA	NA|178aa|down_2|NZ_CP021557.1_1193189_1193723_-	NA	NA|139aa|down_3|NZ_CP021557.1_1193795_1194212_-	NA	NA|130aa|down_4|NZ_CP021557.1_1194208_1194598_-	NA	NA|141aa|down_5|NZ_CP021557.1_1194599_1195022_-	NA	NA|195aa|down_6|NZ_CP021557.1_1195018_1195603_-	NA	NA|286aa|down_7|NZ_CP021557.1_1195667_1196525_-	TIGR04387, hypothetical_protein, major capsid protein, N4-gp56 family	NA|205aa|down_8|NZ_CP021557.1_1196541_1197156_-	NA	NA|387aa|down_9|NZ_CP021557.1_1197179_1198340_-	NA
GCF_002838525.1_ASM283852v1	NZ_CP021557	Bifidobacterium breve strain 180W83 chromosome, complete genome	2	1676508-1677148	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas3,WYL	Orphan	ATTTCAATCCACGCTCCCCGGATGGGGAGCGACA,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	34,33,33	2	2	1676815-1676846|1676814-1676846	NZ_CP021557.1_1323735-1323766|NZ_CP021557.1_1323734-1323766	I-C:I-C:I-C	9,9,8	9	Orphan	DEDDh,cas3,WYL	NA,NA|85aa|down_8|NZ_CP021557.1_1688317_1688572_+	NA|187aa|up_9|NZ_CP021557.1_1663183_1663744_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP021557.1_1663803_1665378_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP021557.1_1665431_1666127_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP021557.1_1666147_1666900_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP021557.1_1666947_1669257_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP021557.1_1669501_1670206_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP021557.1_1670344_1671358_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP021557.1_1671652_1673515_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP021557.1_1673681_1673966_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP021557.1_1674251_1675472_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|1103aa|down_0|NZ_CP021557.1_1677278_1680587_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|322aa|down_1|NZ_CP021557.1_1681259_1682225_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|132aa|down_2|NZ_CP021557.1_1682300_1682696_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|316aa|down_3|NZ_CP021557.1_1682827_1683775_-	cd06323, PBP1_ribose_binding, periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs	NA|330aa|down_4|NZ_CP021557.1_1683851_1684841_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|507aa|down_5|NZ_CP021557.1_1684855_1686376_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|340aa|down_6|NZ_CP021557.1_1686635_1687655_-	cd06299, PBP1_LacI-like, ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum produces significant amounts of L-glutamate directly from cheap sugar and ammonia	NA|112aa|down_7|NZ_CP021557.1_1687799_1688135_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|85aa|down_8|NZ_CP021557.1_1688317_1688572_+	NA	NA|482aa|down_9|NZ_CP021557.1_1688924_1690370_-	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters
GCF_002838525.1_ASM283852v1	NZ_CP021557	Bifidobacterium breve strain 180W83 chromosome, complete genome	3	2024010-2024156	3	CRISPRCasFinder	no		DEDDh,cas3,WYL	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	1	1	2024035-2024070	NZ_CP021557.1_2025372-2025407	NA	2	2	Orphan	DEDDh,cas3,WYL	NA|700aa|up_3|NZ_CP021557.1_2019205_2021305_+,NA|318aa|down_0|NZ_CP021557.1_2024270_2025224_+	NA|145aa|up_9|NZ_CP021557.1_2002590_2003025_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|3161aa|up_8|NZ_CP021557.1_2003943_2013426_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP021557.1_2013465_2015088_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_6|NZ_CP021557.1_2015080_2016961_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP021557.1_2017473_2018073_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP021557.1_2018074_2019034_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP021557.1_2019205_2021305_+	NA	NA|286aa|up_2|NZ_CP021557.1_2021383_2022241_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021557.1_2022514_2023207_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021557.1_2023222_2023654_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021557.1_2024270_2025224_+	NA	NA|276aa|down_1|NZ_CP021557.1_2025592_2026420_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021557.1_2026452_2026680_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021557.1_2027009_2028215_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021557.1_2028356_2029619_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021557.1_2029714_2030848_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021557.1_2030954_2032646_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021557.1_2032712_2032964_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021557.1_2032986_2033295_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1024aa|down_9|NZ_CP021557.1_2033481_2036553_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838525.1_ASM283852v1	NZ_CP021557	Bifidobacterium breve strain 180W83 chromosome, complete genome	4	2169492-2169568	4	CRISPRCasFinder	no		DEDDh,cas3,WYL	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL	NA,NA	NA|350aa|up_9|NZ_CP021557.1_2153374_2154424_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_8|NZ_CP021557.1_2155053_2156472_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_7|NZ_CP021557.1_2156576_2157518_+	pfam02424, ApbE, ApbE family	NA|610aa|up_6|NZ_CP021557.1_2157526_2159356_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_5|NZ_CP021557.1_2159487_2161356_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_4|NZ_CP021557.1_2161539_2162061_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|76aa|up_3|NZ_CP021557.1_2162636_2162864_+	pfam07920, DUF1684, Protein of unknown function (DUF1684)	NA|508aa|up_2|NZ_CP021557.1_2162970_2164494_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021557.1_2164746_2168505_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021557.1_2168514_2169216_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021557.1_2169698_2171171_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021557.1_2171222_2171828_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021557.1_2171977_2172820_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021557.1_2172819_2173674_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021557.1_2174044_2175061_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021557.1_2175268_2176597_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021557.1_2177017_2177716_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021557.1_2177802_2178180_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP021557.1_2178275_2179043_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP021557.1_2179209_2181957_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
