assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838505.1_ASM283850v1	NZ_CP021553	Bifidobacterium breve strain DRBB28 chromosome, complete genome	1	156381-156717	1	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	RT,DEDDh,cas3,WYL	NA,NA|264aa|down_3|NZ_CP021553.1_161708_162500_-	NA|312aa|up_9|NZ_CP021553.1_143126_144062_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NZ_CP021553.1_144124_145192_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NZ_CP021553.1_145359_146646_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NZ_CP021553.1_146669_148253_+	cd01031, EriC, ClC chloride channel EriC	NA|348aa|up_5|NZ_CP021553.1_148440_149484_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|356aa|up_4|NZ_CP021553.1_148811_149879_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NZ_CP021553.1_150152_151238_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_2|NZ_CP021553.1_151664_153191_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP021553.1_153395_155030_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP021553.1_155099_156152_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP021553.1_157138_158506_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021553.1_158899_159952_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP021553.1_160379_161432_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|264aa|down_3|NZ_CP021553.1_161708_162500_-	NA	NA|343aa|down_4|NZ_CP021553.1_162496_163525_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|605aa|down_5|NZ_CP021553.1_163731_165546_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_6|NZ_CP021553.1_165817_166849_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1469aa|down_7|NZ_CP021553.1_167754_172161_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|612aa|down_8|NZ_CP021553.1_172265_174101_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_9|NZ_CP021553.1_174356_175316_+	cd05827, Sortase_C, Sortase domain found in class C sortases
GCF_002838505.1_ASM283850v1	NZ_CP021553	Bifidobacterium breve strain DRBB28 chromosome, complete genome	2	432481-432653	1	PILER-CR	no	RT	RT,DEDDh,cas3,WYL	Unclear	CGTCCTGAACGCCATCAGCGGCGTATGGACGAGCGTATGGA	41	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,cas3,WYL	NA|112aa|up_5|NZ_CP021553.1_427860_428196_+,NA|92aa|up_4|NZ_CP021553.1_428207_428483_+,NA|122aa|up_3|NZ_CP021553.1_428479_428845_+,NA|196aa|up_2|NZ_CP021553.1_428876_429464_+,NA|107aa|up_1|NZ_CP021553.1_429517_429838_+,NA|261aa|down_0|NZ_CP021553.1_433333_434116_+,NA|201aa|down_2|NZ_CP021553.1_437935_438538_+,NA|241aa|down_3|NZ_CP021553.1_438688_439411_+,NA|527aa|down_4|NZ_CP021553.1_439427_441008_+,NA|77aa|down_6|NZ_CP021553.1_442588_442819_+,NA|108aa|down_7|NZ_CP021553.1_442946_443270_+	NA|178aa|up_9|NZ_CP021553.1_425601_426135_+	pfam14265, DUF4355, Domain of unknown function (DUF4355)	NA|302aa|up_8|NZ_CP021553.1_426180_427086_+	pfam05065, Phage_capsid, Phage capsid family	NA|105aa|up_7|NZ_CP021553.1_427085_427400_+	pfam11133, Phage_head_fibr, Head fiber protein	NA|151aa|up_6|NZ_CP021553.1_427411_427864_+	pfam09355, Phage_Gp19, Phage protein Gp19/Gp15/Gp42	NA|112aa|up_5|NZ_CP021553.1_427860_428196_+	NA	NA|92aa|up_4|NZ_CP021553.1_428207_428483_+	NA	NA|122aa|up_3|NZ_CP021553.1_428479_428845_+	NA	NA|196aa|up_2|NZ_CP021553.1_428876_429464_+	NA	NA|107aa|up_1|NZ_CP021553.1_429517_429838_+	NA	NA|131aa|up_0|NZ_CP021553.1_429849_430242_+	pfam17318, DUF5361, Family of unknown function (DUF5361)	NA|261aa|down_0|NZ_CP021553.1_433333_434116_+	NA	NA|1264aa|down_1|NZ_CP021553.1_434135_437927_+	pfam06605, Prophage_tail, Prophage endopeptidase tail	NA|201aa|down_2|NZ_CP021553.1_437935_438538_+	NA	NA|241aa|down_3|NZ_CP021553.1_438688_439411_+	NA	NA|527aa|down_4|NZ_CP021553.1_439427_441008_+	NA	RT|412aa|down_5|NZ_CP021553.1_441422_442658_+	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin	NA|77aa|down_6|NZ_CP021553.1_442588_442819_+	NA	NA|108aa|down_7|NZ_CP021553.1_442946_443270_+	NA	NA|411aa|down_8|NZ_CP021553.1_443330_444563_+	cd06417, GH25_LysA-like, LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|89aa|down_9|NZ_CP021553.1_444647_444914_+	pfam16938, Phage_holin_Dp1, Putative phage holin Dp-1
GCF_002838505.1_ASM283850v1	NZ_CP021553	Bifidobacterium breve strain DRBB28 chromosome, complete genome	3	1302510-1302688	2	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	CCGGTTTTCGGGTCGATGGTGGC	23	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,cas3,WYL	NA|64aa|up_8|NZ_CP021553.1_1292538_1292730_+,NA|230aa|up_6|NZ_CP021553.1_1293702_1294392_-,NA|123aa|up_4|NZ_CP021553.1_1294861_1295230_-,NA|99aa|up_3|NZ_CP021553.1_1295259_1295556_-,NA|403aa|up_1|NZ_CP021553.1_1298818_1300027_-,NA|315aa|up_0|NZ_CP021553.1_1300026_1300971_-,NA|99aa|down_0|NZ_CP021553.1_1305278_1305575_-,NA|165aa|down_1|NZ_CP021553.1_1305646_1306141_-,NA|178aa|down_2|NZ_CP021553.1_1306316_1306850_-,NA|139aa|down_3|NZ_CP021553.1_1306922_1307339_-,NA|130aa|down_4|NZ_CP021553.1_1307335_1307725_-,NA|141aa|down_5|NZ_CP021553.1_1307726_1308149_-,NA|195aa|down_6|NZ_CP021553.1_1308145_1308730_-,NA|205aa|down_8|NZ_CP021553.1_1309668_1310283_-,NA|387aa|down_9|NZ_CP021553.1_1310306_1311467_-	NA|382aa|up_9|NZ_CP021553.1_1291133_1292279_+	PRK14278, PRK14278, chaperone protein DnaJ; Provisional	NA|64aa|up_8|NZ_CP021553.1_1292538_1292730_+	NA	NA|290aa|up_7|NZ_CP021553.1_1292754_1293624_+	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|230aa|up_6|NZ_CP021553.1_1293702_1294392_-	NA	NA|146aa|up_5|NZ_CP021553.1_1294388_1294826_-	pfam04688, Holin_SPP1, SPP1 phage holin	NA|123aa|up_4|NZ_CP021553.1_1294861_1295230_-	NA	NA|99aa|up_3|NZ_CP021553.1_1295259_1295556_-	NA	NA|1078aa|up_2|NZ_CP021553.1_1295574_1298808_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|403aa|up_1|NZ_CP021553.1_1298818_1300027_-	NA	NA|315aa|up_0|NZ_CP021553.1_1300026_1300971_-	NA	NA|99aa|down_0|NZ_CP021553.1_1305278_1305575_-	NA	NA|165aa|down_1|NZ_CP021553.1_1305646_1306141_-	NA	NA|178aa|down_2|NZ_CP021553.1_1306316_1306850_-	NA	NA|139aa|down_3|NZ_CP021553.1_1306922_1307339_-	NA	NA|130aa|down_4|NZ_CP021553.1_1307335_1307725_-	NA	NA|141aa|down_5|NZ_CP021553.1_1307726_1308149_-	NA	NA|195aa|down_6|NZ_CP021553.1_1308145_1308730_-	NA	NA|286aa|down_7|NZ_CP021553.1_1308794_1309652_-	TIGR04387, hypothetical_protein, major capsid protein, N4-gp56 family	NA|205aa|down_8|NZ_CP021553.1_1309668_1310283_-	NA	NA|387aa|down_9|NZ_CP021553.1_1310306_1311467_-	NA
GCF_002838505.1_ASM283850v1	NZ_CP021553	Bifidobacterium breve strain DRBB28 chromosome, complete genome	4	2195714-2195860	3	CRISPRCasFinder	no		RT,DEDDh,cas3,WYL	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	1	1	2195739-2195774	NZ_CP021553.1_2197076-2197111	NA	2	2	Orphan	RT,DEDDh,cas3,WYL	NA|702aa|up_3|NZ_CP021553.1_2190903_2193009_+,NA|318aa|down_0|NZ_CP021553.1_2195974_2196928_+	NA|75aa|up_9|NZ_CP021553.1_2174033_2174258_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|3161aa|up_8|NZ_CP021553.1_2175654_2185137_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP021553.1_2185176_2186799_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_6|NZ_CP021553.1_2186791_2188660_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|236aa|up_5|NZ_CP021553.1_2189063_2189771_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP021553.1_2189772_2190732_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|702aa|up_3|NZ_CP021553.1_2190903_2193009_+	NA	NA|286aa|up_2|NZ_CP021553.1_2193087_2193945_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021553.1_2194218_2194911_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021553.1_2194926_2195358_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021553.1_2195974_2196928_+	NA	NA|276aa|down_1|NZ_CP021553.1_2197283_2198111_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021553.1_2198143_2198371_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021553.1_2198700_2199906_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021553.1_2200046_2201309_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021553.1_2201404_2202538_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021553.1_2202645_2204337_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021553.1_2204403_2204655_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021553.1_2204677_2204986_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1021aa|down_9|NZ_CP021553.1_2205172_2208235_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
