assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838485.1_ASM283848v1	NZ_CP021558	Bifidobacterium breve strain 215W447a chromosome, complete genome	1	152124-152199	1	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL,cas14j,Cas14u_CAS-V,c2c10_CAS-V-U3,cas14k	Orphan	CTGGTGGTTTTGCCCCGCTGAGG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,WYL,cas14j,Cas14u_CAS-V,c2c10_CAS-V-U3,cas14k	NA,NA|262aa|down_3|NZ_CP021558.1_157487_158273_-	NA|312aa|up_9|NZ_CP021558.1_139279_140215_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NZ_CP021558.1_140277_141345_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NZ_CP021558.1_141512_142799_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NZ_CP021558.1_142822_144406_+	cd01031, EriC, ClC chloride channel EriC	NA|355aa|up_5|NZ_CP021558.1_144593_145658_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|363aa|up_4|NZ_CP021558.1_144964_146053_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NZ_CP021558.1_146326_147412_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|365aa|up_2|NZ_CP021558.1_147838_148933_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP021558.1_149137_150772_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP021558.1_150841_151894_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP021558.1_152885_154253_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021558.1_154647_155700_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP021558.1_156130_157183_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|262aa|down_3|NZ_CP021558.1_157487_158273_-	NA	NA|343aa|down_4|NZ_CP021558.1_158269_159298_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|605aa|down_5|NZ_CP021558.1_159504_161319_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_6|NZ_CP021558.1_161590_162622_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|424aa|down_7|NZ_CP021558.1_163423_164695_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|1471aa|down_8|NZ_CP021558.1_164918_169331_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|613aa|down_9|NZ_CP021558.1_169435_171274_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain
GCF_002838485.1_ASM283848v1	NZ_CP021558	Bifidobacterium breve strain 215W447a chromosome, complete genome	2	152280-152458	2	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL,cas14j,Cas14u_CAS-V,c2c10_CAS-V-U3,cas14k	Orphan	CTGGTGGTTTTGCCCCGCTGAGG	23	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas3,c2c9_V-U4,WYL,cas14j,Cas14u_CAS-V,c2c10_CAS-V-U3,cas14k	NA,NA|262aa|down_3|NZ_CP021558.1_157487_158273_-	NA|312aa|up_9|NZ_CP021558.1_139279_140215_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NZ_CP021558.1_140277_141345_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NZ_CP021558.1_141512_142799_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NZ_CP021558.1_142822_144406_+	cd01031, EriC, ClC chloride channel EriC	NA|355aa|up_5|NZ_CP021558.1_144593_145658_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|363aa|up_4|NZ_CP021558.1_144964_146053_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NZ_CP021558.1_146326_147412_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|365aa|up_2|NZ_CP021558.1_147838_148933_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP021558.1_149137_150772_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP021558.1_150841_151894_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP021558.1_152885_154253_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021558.1_154647_155700_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP021558.1_156130_157183_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|262aa|down_3|NZ_CP021558.1_157487_158273_-	NA	NA|343aa|down_4|NZ_CP021558.1_158269_159298_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|605aa|down_5|NZ_CP021558.1_159504_161319_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_6|NZ_CP021558.1_161590_162622_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|424aa|down_7|NZ_CP021558.1_163423_164695_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|1471aa|down_8|NZ_CP021558.1_164918_169331_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|613aa|down_9|NZ_CP021558.1_169435_171274_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain
GCF_002838485.1_ASM283848v1	NZ_CP021558	Bifidobacterium breve strain 215W447a chromosome, complete genome	3	2319651-2319797	3	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL,cas14j,Cas14u_CAS-V,c2c10_CAS-V-U3,cas14k	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	2	2	2319676-2319711|2319737-2319772	NZ_CP021558.1_2321013-2321048|NZ_CP021558.1_2321074-2321109	NA	2	2	Orphan	DEDDh,cas3,c2c9_V-U4,WYL,cas14j,Cas14u_CAS-V,c2c10_CAS-V-U3,cas14k	NA|702aa|up_3|NZ_CP021558.1_2314841_2316947_+,NA|318aa|down_0|NZ_CP021558.1_2319911_2320865_+	NA|90aa|up_9|NZ_CP021558.1_2298386_2298656_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|3161aa|up_8|NZ_CP021558.1_2299591_2309074_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP021558.1_2309113_2310736_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_6|NZ_CP021558.1_2310728_2312597_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP021558.1_2313109_2313709_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP021558.1_2313710_2314670_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|702aa|up_3|NZ_CP021558.1_2314841_2316947_+	NA	NA|286aa|up_2|NZ_CP021558.1_2317025_2317883_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021558.1_2318155_2318848_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021558.1_2318863_2319295_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021558.1_2319911_2320865_+	NA	NA|276aa|down_1|NZ_CP021558.1_2321281_2322109_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021558.1_2322141_2322369_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021558.1_2322698_2323904_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021558.1_2324045_2325308_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021558.1_2325403_2326537_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021558.1_2326643_2328335_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021558.1_2328401_2328653_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021558.1_2328675_2328984_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1024aa|down_9|NZ_CP021558.1_2329170_2332242_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838485.1_ASM283848v1	NZ_CP021558	Bifidobacterium breve strain 215W447a chromosome, complete genome	4	2484553-2484629	4	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL,cas14j,Cas14u_CAS-V,c2c10_CAS-V-U3,cas14k	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,WYL,cas14j,Cas14u_CAS-V,c2c10_CAS-V-U3,cas14k	NA|116aa|up_9|NZ_CP021558.1_2467961_2468309_+,NA	NA|116aa|up_9|NZ_CP021558.1_2467961_2468309_+	NA	NA|347aa|up_8|NZ_CP021558.1_2468428_2469469_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP021558.1_2470098_2471517_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP021558.1_2471621_2472563_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP021558.1_2472571_2474401_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP021558.1_2474531_2476400_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP021558.1_2476583_2477105_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP021558.1_2478031_2479555_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021558.1_2479808_2483567_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021558.1_2483576_2484278_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021558.1_2484759_2486232_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021558.1_2486283_2486889_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021558.1_2487038_2487881_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021558.1_2487880_2488735_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021558.1_2489105_2490122_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_CP021558.1_2492071_2492770_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_6|NZ_CP021558.1_2492856_2493234_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_7|NZ_CP021558.1_2493329_2494097_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_8|NZ_CP021558.1_2494264_2497012_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|780aa|down_9|NZ_CP021558.1_2497008_2499348_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
