assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838405.1_ASM283840v1	NZ_CP021392	Bifidobacterium breve strain NRBB51 chromosome, complete genome	1	126955-127291	1	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|262aa|down_3|NZ_CP021392.1_132308_133094_-	NA|312aa|up_9|NZ_CP021392.1_113364_114300_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NZ_CP021392.1_114362_115430_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NZ_CP021392.1_115583_116870_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NZ_CP021392.1_116893_118477_+	cd01031, EriC, ClC chloride channel EriC	NA|364aa|up_5|NZ_CP021392.1_118613_119705_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|356aa|up_4|NZ_CP021392.1_119032_120100_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NZ_CP021392.1_120729_121815_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_2|NZ_CP021392.1_122241_123768_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP021392.1_123972_125607_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP021392.1_125676_126729_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP021392.1_127712_129080_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021392.1_129474_130527_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP021392.1_130954_132007_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|262aa|down_3|NZ_CP021392.1_132308_133094_-	NA	NA|343aa|down_4|NZ_CP021392.1_133090_134119_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|605aa|down_5|NZ_CP021392.1_134325_136140_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_6|NZ_CP021392.1_136411_137443_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1471aa|down_7|NZ_CP021392.1_138347_142760_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|613aa|down_8|NZ_CP021392.1_142864_144703_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_9|NZ_CP021392.1_144959_145919_+	cd05827, Sortase_C, Sortase domain found in class C sortases
GCF_002838405.1_ASM283840v1	NZ_CP021392	Bifidobacterium breve strain NRBB51 chromosome, complete genome	2	1733347-1734058	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	1	1	1733517-1733551	NZ_CP021392.1_1257230-1257264	I-C:I-C:I-C	10,10,9	10	TypeI-U?,TypeI-U,TypeI-C	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_3|NZ_CP021392.1_1743899_1744133_-	NA|187aa|up_9|NZ_CP021392.1_1720115_1720676_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP021392.1_1720735_1722310_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP021392.1_1722363_1723059_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP021392.1_1723079_1723832_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP021392.1_1723879_1726189_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP021392.1_1726338_1727043_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP021392.1_1727181_1728195_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP021392.1_1728491_1730354_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP021392.1_1730520_1730805_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP021392.1_1731090_1732311_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|254aa|down_0|NZ_CP021392.1_1734174_1734936_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|260aa|down_1|NZ_CP021392.1_1735751_1736531_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|500aa|down_2|NZ_CP021392.1_1736527_1738027_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|78aa|down_3|NZ_CP021392.1_1743899_1744133_-	NA	cas2|97aa|down_4|NZ_CP021392.1_1744595_1744886_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_5|NZ_CP021392.1_1744942_1745974_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_6|NZ_CP021392.1_1745975_1746665_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_7|NZ_CP021392.1_1746703_1747555_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_8|NZ_CP021392.1_1747558_1749517_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_9|NZ_CP021392.1_1749519_1750224_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_002838405.1_ASM283840v1	NZ_CP021392	Bifidobacterium breve strain NRBB51 chromosome, complete genome	3	1739125-1743074	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	58,58,58	58	TypeI-U?,TypeI-U,TypeI-C	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP021392.1_1743899_1744133_-	NA|251aa|up_9|NZ_CP021392.1_1723079_1723832_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_8|NZ_CP021392.1_1723879_1726189_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_7|NZ_CP021392.1_1726338_1727043_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_6|NZ_CP021392.1_1727181_1728195_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_5|NZ_CP021392.1_1728491_1730354_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_4|NZ_CP021392.1_1730520_1730805_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_3|NZ_CP021392.1_1731090_1732311_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|254aa|up_2|NZ_CP021392.1_1734174_1734936_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|260aa|up_1|NZ_CP021392.1_1735751_1736531_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|500aa|up_0|NZ_CP021392.1_1736527_1738027_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|78aa|down_0|NZ_CP021392.1_1743899_1744133_-	NA	cas2|97aa|down_1|NZ_CP021392.1_1744595_1744886_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP021392.1_1744942_1745974_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP021392.1_1745975_1746665_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NZ_CP021392.1_1746703_1747555_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NZ_CP021392.1_1747558_1749517_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NZ_CP021392.1_1749519_1750224_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|74aa|down_7|NZ_CP021392.1_1753348_1753570_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|500aa|down_8|NZ_CP021392.1_1753747_1755247_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|down_9|NZ_CP021392.1_1755243_1756023_+	PRK09183, PRK09183, transposase/IS protein; Provisional
GCF_002838405.1_ASM283840v1	NZ_CP021392	Bifidobacterium breve strain NRBB51 chromosome, complete genome	4	2128423-2128569	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	2	2	2128448-2128483|2128509-2128544	NZ_CP021392.1_2129785-2129820|NZ_CP021392.1_2129846-2129881	NA	2	2	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|318aa|down_0|NZ_CP021392.1_2128683_2129637_+	NA|211aa|up_9|NZ_CP021392.1_2105409_2106042_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|75aa|up_8|NZ_CP021392.1_2106740_2106965_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|3161aa|up_7|NZ_CP021392.1_2108363_2117846_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_6|NZ_CP021392.1_2117885_2119508_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_5|NZ_CP021392.1_2119500_2121369_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|181aa|up_4|NZ_CP021392.1_2121938_2122481_+	pfam02632, BioY, BioY family	NA|320aa|up_3|NZ_CP021392.1_2122482_2123442_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|286aa|up_2|NZ_CP021392.1_2125796_2126654_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021392.1_2126927_2127620_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021392.1_2127635_2128067_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021392.1_2128683_2129637_+	NA	NA|276aa|down_1|NZ_CP021392.1_2130053_2130881_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021392.1_2130913_2131141_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021392.1_2131470_2132676_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021392.1_2132817_2134080_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021392.1_2134175_2135309_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021392.1_2135415_2137107_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021392.1_2137173_2137425_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021392.1_2137447_2137756_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1006aa|down_9|NZ_CP021392.1_2137942_2140960_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838405.1_ASM283840v1	NZ_CP021392	Bifidobacterium breve strain NRBB51 chromosome, complete genome	5	2283431-2283507	5	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CCCAACCAATCGAAGAACCACCCCG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|224aa|up_9|NZ_CP021392.1_2266160_2266832_+,NA|90aa|up_8|NZ_CP021392.1_2266900_2267170_+,NA	NA|224aa|up_9|NZ_CP021392.1_2266160_2266832_+	NA	NA|90aa|up_8|NZ_CP021392.1_2266900_2267170_+	NA	NA|350aa|up_7|NZ_CP021392.1_2267289_2268339_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_6|NZ_CP021392.1_2268968_2270387_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_5|NZ_CP021392.1_2270491_2271433_+	pfam02424, ApbE, ApbE family	NA|610aa|up_4|NZ_CP021392.1_2271441_2273271_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_3|NZ_CP021392.1_2273402_2275271_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_2|NZ_CP021392.1_2275454_2275976_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|1253aa|up_1|NZ_CP021392.1_2278678_2282437_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021392.1_2282446_2283148_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021392.1_2283629_2285102_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021392.1_2285153_2285759_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021392.1_2285909_2286752_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021392.1_2286751_2287606_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021392.1_2287976_2288993_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_CP021392.1_2290948_2291647_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_6|NZ_CP021392.1_2291733_2292111_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_7|NZ_CP021392.1_2292206_2292974_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|915aa|down_8|NZ_CP021392.1_2293139_2295884_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|780aa|down_9|NZ_CP021392.1_2295883_2298223_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
