assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838305.1_ASM283830v1	NZ_CP021388	Bifidobacterium breve strain NRBB11 chromosome, complete genome	1	154339-154675	1	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|66aa|down_6|NZ_CP021388.1_164934_165132_+	NA|312aa|up_9|NZ_CP021388.1_140730_141666_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NZ_CP021388.1_141728_142796_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NZ_CP021388.1_142963_144250_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NZ_CP021388.1_144273_145857_+	cd01031, EriC, ClC chloride channel EriC	NA|347aa|up_5|NZ_CP021388.1_146044_147085_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|132aa|up_4|NZ_CP021388.1_147084_147480_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NZ_CP021388.1_148110_149196_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_2|NZ_CP021388.1_149622_151149_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP021388.1_151353_152988_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP021388.1_153057_154110_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP021388.1_155097_156465_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021388.1_156854_157907_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP021388.1_158334_159387_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|343aa|down_3|NZ_CP021388.1_160472_161501_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|605aa|down_4|NZ_CP021388.1_161707_163522_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_5|NZ_CP021388.1_163793_164825_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|66aa|down_6|NZ_CP021388.1_164934_165132_+	NA	NA|1471aa|down_7|NZ_CP021388.1_165733_170146_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|613aa|down_8|NZ_CP021388.1_170250_172089_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_9|NZ_CP021388.1_172344_173304_+	cd05827, Sortase_C, Sortase domain found in class C sortases
GCF_002838305.1_ASM283830v1	NZ_CP021388	Bifidobacterium breve strain NRBB11 chromosome, complete genome	2	1698495-1698664	2	CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACGCTCCCCGGATGGGGATCGACG	34	0	0	NA	NA	I-C	2	2	TypeI-C,TypeI-U,TypeI-U?	DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_2|NZ_CP021388.1_1706365_1706599_-	NA|238aa|up_9|NZ_CP021388.1_1685110_1685824_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP021388.1_1685883_1687458_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP021388.1_1687511_1688207_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP021388.1_1688227_1688980_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP021388.1_1689027_1691337_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP021388.1_1691486_1692191_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP021388.1_1692330_1693344_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP021388.1_1693639_1695502_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP021388.1_1695668_1695953_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP021388.1_1696238_1697459_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|262aa|down_0|NZ_CP021388.1_1698773_1699559_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|494aa|down_1|NZ_CP021388.1_1699561_1701043_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|78aa|down_2|NZ_CP021388.1_1706365_1706599_-	NA	cas2|97aa|down_3|NZ_CP021388.1_1707059_1707350_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_4|NZ_CP021388.1_1707406_1708438_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|232aa|down_5|NZ_CP021388.1_1708434_1709130_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|311aa|down_6|NZ_CP021388.1_1709255_1710188_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|589aa|down_7|NZ_CP021388.1_1710180_1711947_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|219aa|down_8|NZ_CP021388.1_1711943_1712600_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|801aa|down_9|NZ_CP021388.1_1712884_1715287_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_002838305.1_ASM283830v1	NZ_CP021388	Bifidobacterium breve strain NRBB11 chromosome, complete genome	3	1701249-1705540	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	63,63,63	63	TypeI-C,TypeI-U,TypeI-U?	DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP021388.1_1706365_1706599_-	NA|251aa|up_9|NZ_CP021388.1_1688227_1688980_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_8|NZ_CP021388.1_1689027_1691337_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_7|NZ_CP021388.1_1691486_1692191_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_6|NZ_CP021388.1_1692330_1693344_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_5|NZ_CP021388.1_1693639_1695502_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_4|NZ_CP021388.1_1695668_1695953_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_3|NZ_CP021388.1_1696238_1697459_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|285aa|up_2|NZ_CP021388.1_1697643_1698498_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|262aa|up_1|NZ_CP021388.1_1698773_1699559_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|494aa|up_0|NZ_CP021388.1_1699561_1701043_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|78aa|down_0|NZ_CP021388.1_1706365_1706599_-	NA	cas2|97aa|down_1|NZ_CP021388.1_1707059_1707350_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP021388.1_1707406_1708438_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|232aa|down_3|NZ_CP021388.1_1708434_1709130_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|311aa|down_4|NZ_CP021388.1_1709255_1710188_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|589aa|down_5|NZ_CP021388.1_1710180_1711947_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|219aa|down_6|NZ_CP021388.1_1711943_1712600_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|801aa|down_7|NZ_CP021388.1_1712884_1715287_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|1103aa|down_8|NZ_CP021388.1_1715428_1718737_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|323aa|down_9|NZ_CP021388.1_1719409_1720378_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP
GCF_002838305.1_ASM283830v1	NZ_CP021388	Bifidobacterium breve strain NRBB11 chromosome, complete genome	4	2093767-2093913	4	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	1	1	2093792-2093827	NZ_CP021388.1_2095129-2095164	NA	2	2	Orphan	DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|700aa|up_3|NZ_CP021388.1_2088962_2091062_+,NA|318aa|down_0|NZ_CP021388.1_2094027_2094981_+	NA|75aa|up_9|NZ_CP021388.1_2072077_2072302_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|3161aa|up_8|NZ_CP021388.1_2073700_2083183_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP021388.1_2083222_2084845_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_6|NZ_CP021388.1_2084837_2086718_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|181aa|up_5|NZ_CP021388.1_2087287_2087830_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP021388.1_2087831_2088791_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP021388.1_2088962_2091062_+	NA	NA|286aa|up_2|NZ_CP021388.1_2091140_2091998_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021388.1_2092271_2092964_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021388.1_2092979_2093411_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021388.1_2094027_2094981_+	NA	NA|276aa|down_1|NZ_CP021388.1_2095336_2096164_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021388.1_2096196_2096424_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021388.1_2096753_2097959_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021388.1_2098100_2099363_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021388.1_2099458_2100592_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021388.1_2100698_2102390_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021388.1_2102456_2102708_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021388.1_2102730_2103039_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1018aa|down_9|NZ_CP021388.1_2103225_2106279_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838305.1_ASM283830v1	NZ_CP021388	Bifidobacterium breve strain NRBB11 chromosome, complete genome	5	2261168-2261244	5	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|116aa|up_9|NZ_CP021388.1_2244566_2244914_+,NA	NA|116aa|up_9|NZ_CP021388.1_2244566_2244914_+	NA	NA|350aa|up_8|NZ_CP021388.1_2245033_2246083_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP021388.1_2246712_2248131_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP021388.1_2248235_2249177_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP021388.1_2249185_2251015_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP021388.1_2251146_2253015_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP021388.1_2253198_2253720_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP021388.1_2254645_2256169_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021388.1_2256422_2260181_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021388.1_2260190_2260892_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021388.1_2261374_2262847_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021388.1_2262898_2263504_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021388.1_2263654_2264497_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021388.1_2264496_2265351_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021388.1_2265721_2266738_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021388.1_2266945_2268274_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021388.1_2268686_2269385_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021388.1_2269471_2269849_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|916aa|down_8|NZ_CP021388.1_2270878_2273626_+	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|780aa|down_9|NZ_CP021388.1_2273622_2275962_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
