assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838285.1_ASM283828v1	NZ_CP021386	Bifidobacterium breve strain NRBB04 chromosome, complete genome	1	1635313-1636091	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,AATCCACGCTCCCCGGATGGGGAGCGAC	33,33,28	0	0	NA	NA	I-C:I-C:NA	11,11,11	11	TypeI-U,TypeI-U?,TypeI-C	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_4|NZ_CP021386.1_1646542_1646776_-	NA|238aa|up_9|NZ_CP021386.1_1621930_1622644_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP021386.1_1622703_1624278_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP021386.1_1624331_1625027_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP021386.1_1625047_1625800_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP021386.1_1625847_1628157_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP021386.1_1628306_1629011_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP021386.1_1629149_1630163_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP021386.1_1630457_1632320_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP021386.1_1632486_1632771_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP021386.1_1633056_1634277_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|500aa|down_0|NZ_CP021386.1_1636858_1638358_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|down_1|NZ_CP021386.1_1638354_1639134_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|500aa|down_2|NZ_CP021386.1_1639945_1641445_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|down_3|NZ_CP021386.1_1641441_1642221_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|78aa|down_4|NZ_CP021386.1_1646542_1646776_-	NA	cas2|97aa|down_5|NZ_CP021386.1_1647238_1647529_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_6|NZ_CP021386.1_1647585_1648617_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_7|NZ_CP021386.1_1648618_1649308_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_8|NZ_CP021386.1_1649346_1650198_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_9|NZ_CP021386.1_1650201_1652160_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)
GCF_002838285.1_ASM283828v1	NZ_CP021386	Bifidobacterium breve strain NRBB04 chromosome, complete genome	2	1643724-1645717	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	29,29,29	29	TypeI-U,TypeI-U?,TypeI-C	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP021386.1_1646542_1646776_-	NA|770aa|up_9|NZ_CP021386.1_1625847_1628157_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_8|NZ_CP021386.1_1628306_1629011_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_7|NZ_CP021386.1_1629149_1630163_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_6|NZ_CP021386.1_1630457_1632320_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_5|NZ_CP021386.1_1632486_1632771_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_4|NZ_CP021386.1_1633056_1634277_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|500aa|up_3|NZ_CP021386.1_1636858_1638358_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|up_2|NZ_CP021386.1_1638354_1639134_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|500aa|up_1|NZ_CP021386.1_1639945_1641445_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|260aa|up_0|NZ_CP021386.1_1641441_1642221_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|78aa|down_0|NZ_CP021386.1_1646542_1646776_-	NA	cas2|97aa|down_1|NZ_CP021386.1_1647238_1647529_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP021386.1_1647585_1648617_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP021386.1_1648618_1649308_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NZ_CP021386.1_1649346_1650198_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NZ_CP021386.1_1650201_1652160_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NZ_CP021386.1_1652162_1652867_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|813aa|down_7|NZ_CP021386.1_1652873_1655312_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|205aa|down_8|NZ_CP021386.1_1655900_1656515_-	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3	NA|322aa|down_9|NZ_CP021386.1_1660913_1661879_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP
GCF_002838285.1_ASM283828v1	NZ_CP021386	Bifidobacterium breve strain NRBB04 chromosome, complete genome	3	2064436-2064582	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|700aa|up_3|NZ_CP021386.1_2059632_2061732_+,NA|318aa|down_0|NZ_CP021386.1_2064696_2065650_+	NA|75aa|up_9|NZ_CP021386.1_2042716_2042941_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|145aa|up_8|NZ_CP021386.1_2043028_2043463_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|3171aa|up_7|NZ_CP021386.1_2044341_2053854_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_6|NZ_CP021386.1_2053893_2055516_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_5|NZ_CP021386.1_2055508_2057389_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_4|NZ_CP021386.1_2057901_2058501_+	pfam02632, BioY, BioY family	NA|700aa|up_3|NZ_CP021386.1_2059632_2061732_+	NA	NA|286aa|up_2|NZ_CP021386.1_2061810_2062668_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021386.1_2062940_2063633_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021386.1_2063648_2064080_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021386.1_2064696_2065650_+	NA	NA|276aa|down_1|NZ_CP021386.1_2066005_2066833_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021386.1_2066865_2067093_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021386.1_2067422_2068628_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|417aa|down_4|NZ_CP021386.1_2068768_2070019_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021386.1_2070114_2071248_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021386.1_2071354_2073046_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021386.1_2073112_2073364_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021386.1_2073386_2073695_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1006aa|down_9|NZ_CP021386.1_2073881_2076899_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838285.1_ASM283828v1	NZ_CP021386	Bifidobacterium breve strain NRBB04 chromosome, complete genome	4	2209657-2209733	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|224aa|up_9|NZ_CP021386.1_2192382_2193054_+,NA	NA|224aa|up_9|NZ_CP021386.1_2192382_2193054_+	NA	NA|350aa|up_8|NZ_CP021386.1_2193511_2194561_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP021386.1_2195190_2196609_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP021386.1_2196713_2197655_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP021386.1_2197663_2199493_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP021386.1_2199624_2201493_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP021386.1_2201676_2202198_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP021386.1_2203135_2204659_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021386.1_2204911_2208670_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021386.1_2208679_2209381_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021386.1_2209863_2211336_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021386.1_2211387_2211993_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021386.1_2212143_2212986_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021386.1_2212985_2213840_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021386.1_2214210_2215227_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021386.1_2215434_2216763_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021386.1_2217183_2217882_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021386.1_2217968_2218346_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP021386.1_2218441_2219209_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP021386.1_2219375_2222123_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
