assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838265.1_ASM283826v1	NZ_CP021385	Bifidobacterium breve strain NRBB02 chromosome, complete genome	1	1660452-1661427	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	14,14,13	14	TypeI-U?,TypeI-C,TypeI-U	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_3|NZ_CP021385.1_1672186_1672420_-	NA|238aa|up_9|NZ_CP021385.1_1647067_1647781_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|525aa|up_8|NZ_CP021385.1_1647840_1649415_-	TIGR03689, pup_AAA, proteasome ATPase	NA|232aa|up_7|NZ_CP021385.1_1649468_1650164_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|251aa|up_6|NZ_CP021385.1_1650184_1650937_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_5|NZ_CP021385.1_1650984_1653294_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_4|NZ_CP021385.1_1653443_1654148_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_3|NZ_CP021385.1_1654287_1655301_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_2|NZ_CP021385.1_1655596_1657459_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_1|NZ_CP021385.1_1657625_1657910_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_0|NZ_CP021385.1_1658195_1659416_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|262aa|down_0|NZ_CP021385.1_1662511_1663297_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|494aa|down_1|NZ_CP021385.1_1663299_1664781_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|down_2|NZ_CP021385.1_1665586_1666348_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_3|NZ_CP021385.1_1672186_1672420_-	NA	cas2|97aa|down_4|NZ_CP021385.1_1672879_1673170_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_5|NZ_CP021385.1_1673226_1674258_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_6|NZ_CP021385.1_1674259_1674949_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_7|NZ_CP021385.1_1674987_1675839_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_8|NZ_CP021385.1_1675842_1677801_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_9|NZ_CP021385.1_1677803_1678508_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_002838265.1_ASM283826v1	NZ_CP021385	Bifidobacterium breve strain NRBB02 chromosome, complete genome	2	1668229-1671362	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-C,Type I-U	ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC,ATTTCAATCCACGCTCCCCGGATGGGGAGCGAC	33,33,33	0	0	NA	NA	I-C:I-C:I-C	46,46,26	46	TypeI-U?,TypeI-C,TypeI-U	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|78aa|down_0|NZ_CP021385.1_1672186_1672420_-	NA|251aa|up_9|NZ_CP021385.1_1650184_1650937_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|770aa|up_8|NZ_CP021385.1_1650984_1653294_+	PRK14873, PRK14873, primosomal protein N'	NA|235aa|up_7|NZ_CP021385.1_1653443_1654148_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|338aa|up_6|NZ_CP021385.1_1654287_1655301_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|621aa|up_5|NZ_CP021385.1_1655596_1657459_-	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional	NA|95aa|up_4|NZ_CP021385.1_1657625_1657910_+	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|407aa|up_3|NZ_CP021385.1_1658195_1659416_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|262aa|up_2|NZ_CP021385.1_1662511_1663297_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|494aa|up_1|NZ_CP021385.1_1663299_1664781_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|up_0|NZ_CP021385.1_1665586_1666348_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|78aa|down_0|NZ_CP021385.1_1672186_1672420_-	NA	cas2|97aa|down_1|NZ_CP021385.1_1672879_1673170_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP021385.1_1673226_1674258_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|230aa|down_3|NZ_CP021385.1_1674259_1674949_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|284aa|down_4|NZ_CP021385.1_1674987_1675839_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|653aa|down_5|NZ_CP021385.1_1675842_1677801_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|235aa|down_6|NZ_CP021385.1_1677803_1678508_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|813aa|down_7|NZ_CP021385.1_1678514_1680953_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|181aa|down_8|NZ_CP021385.1_1681611_1682154_-	pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase family ISL3	NA|1103aa|down_9|NZ_CP021385.1_1682571_1685880_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed
GCF_002838265.1_ASM283826v1	NZ_CP021385	Bifidobacterium breve strain NRBB02 chromosome, complete genome	3	2016112-2016258	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|700aa|up_3|NZ_CP021385.1_2011308_2013408_+,NA|318aa|down_0|NZ_CP021385.1_2016372_2017326_+	NA|144aa|up_9|NZ_CP021385.1_1993305_1993737_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|75aa|up_8|NZ_CP021385.1_1994433_1994658_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|541aa|up_7|NZ_CP021385.1_2005568_2007191_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|627aa|up_6|NZ_CP021385.1_2007183_2009064_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|200aa|up_5|NZ_CP021385.1_2009576_2010176_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP021385.1_2010177_2011137_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|700aa|up_3|NZ_CP021385.1_2011308_2013408_+	NA	NA|286aa|up_2|NZ_CP021385.1_2013486_2014344_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021385.1_2014616_2015309_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021385.1_2015324_2015756_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021385.1_2016372_2017326_+	NA	NA|276aa|down_1|NZ_CP021385.1_2017681_2018509_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021385.1_2018541_2018769_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021385.1_2019098_2020304_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021385.1_2020445_2021708_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021385.1_2021803_2022937_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021385.1_2023043_2024735_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021385.1_2024801_2025053_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021385.1_2025075_2025384_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1021aa|down_9|NZ_CP021385.1_2025570_2028633_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838265.1_ASM283826v1	NZ_CP021385	Bifidobacterium breve strain NRBB02 chromosome, complete genome	4	2182406-2182482	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCAAATCCCCCAACCAATCGAAGAA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5	NA|116aa|up_9|NZ_CP021385.1_2165817_2166165_+,NA	NA|116aa|up_9|NZ_CP021385.1_2165817_2166165_+	NA	NA|347aa|up_8|NZ_CP021385.1_2166284_2167325_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP021385.1_2167954_2169373_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP021385.1_2169477_2170419_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP021385.1_2170427_2172257_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP021385.1_2172388_2174257_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP021385.1_2174440_2174962_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP021385.1_2175887_2177411_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1252aa|up_1|NZ_CP021385.1_2177664_2181420_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021385.1_2181429_2182131_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021385.1_2182612_2184085_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021385.1_2184136_2184742_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021385.1_2184892_2185735_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021385.1_2185734_2186589_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021385.1_2186959_2187976_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021385.1_2188183_2189512_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021385.1_2189932_2190631_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021385.1_2190717_2191095_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP021385.1_2191190_2191958_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP021385.1_2192125_2194873_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
