assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002838225.1_ASM283822v1	NZ_CP021390	Bifidobacterium breve strain DRBB26 chromosome, complete genome	1	136374-136710	1	CRISPRCasFinder	no		DEDDh,cas3,WYL	Orphan	TACTGGTGGTTTTGCCCCGCTGAGG	25	0	0	NA	NA	NA	6	6	Orphan	DEDDh,cas3,WYL	NA,NA|264aa|down_3|NZ_CP021390.1_141697_142489_-	NA|312aa|up_9|NZ_CP021390.1_123108_124044_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|356aa|up_8|NZ_CP021390.1_124106_125174_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|429aa|up_7|NZ_CP021390.1_125341_126628_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|up_6|NZ_CP021390.1_126651_128235_+	cd01031, EriC, ClC chloride channel EriC	NA|354aa|up_5|NZ_CP021390.1_128419_129481_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|132aa|up_4|NZ_CP021390.1_129480_129876_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|362aa|up_3|NZ_CP021390.1_130149_131235_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|509aa|up_2|NZ_CP021390.1_131661_133188_+	PRK13840, PRK13840, sucrose phosphorylase; Provisional	NA|545aa|up_1|NZ_CP021390.1_133392_135027_+	cd06174, MFS, Major Facilitator Superfamily	NA|351aa|up_0|NZ_CP021390.1_135096_136149_+	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs	NA|456aa|down_0|NZ_CP021390.1_137132_138500_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|351aa|down_1|NZ_CP021390.1_138889_139942_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|351aa|down_2|NZ_CP021390.1_140369_141422_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|264aa|down_3|NZ_CP021390.1_141697_142489_-	NA	NA|343aa|down_4|NZ_CP021390.1_142485_143514_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|605aa|down_5|NZ_CP021390.1_143720_145535_-	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins	NA|344aa|down_6|NZ_CP021390.1_145806_146838_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|1471aa|down_7|NZ_CP021390.1_147711_152124_+	pfam17802, SpaA, Prealbumin-like fold domain	NA|612aa|down_8|NZ_CP021390.1_152228_154064_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|320aa|down_9|NZ_CP021390.1_154320_155280_+	cd05827, Sortase_C, Sortase domain found in class C sortases
GCF_002838225.1_ASM283822v1	NZ_CP021390	Bifidobacterium breve strain DRBB26 chromosome, complete genome	2	1115368-1115453	2	CRISPRCasFinder	no		DEDDh,cas3,WYL	Orphan	GCTTAGTGCAATAAATTCTCGAAAT	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL	NA|79aa|up_7|NZ_CP021390.1_1106489_1106726_+,NA|158aa|up_3|NZ_CP021390.1_1111262_1111736_-,NA|319aa|down_0|NZ_CP021390.1_1115611_1116568_-	NA|225aa|up_9|NZ_CP021390.1_1105349_1106024_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|128aa|up_8|NZ_CP021390.1_1106106_1106490_+	pfam06103, DUF948, Bacterial protein of unknown function (DUF948)	NA|79aa|up_7|NZ_CP021390.1_1106489_1106726_+	NA	NA|893aa|up_6|NZ_CP021390.1_1106821_1109500_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|151aa|up_5|NZ_CP021390.1_1109508_1109961_+	pfam03652, RuvX, Holliday junction resolvase	NA|396aa|up_4|NZ_CP021390.1_1109973_1111161_+	pfam02618, YceG, YceG-like family	NA|158aa|up_3|NZ_CP021390.1_1111262_1111736_-	NA	NA|396aa|up_2|NZ_CP021390.1_1111784_1112972_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|541aa|up_1|NZ_CP021390.1_1113006_1114629_+	PRK14021, PRK14021, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional	NA|149aa|up_0|NZ_CP021390.1_1114780_1115227_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|319aa|down_0|NZ_CP021390.1_1115611_1116568_-	NA	NA|555aa|down_1|NZ_CP021390.1_1116757_1118422_+	PRK05380, pyrG, CTP synthetase; Validated	NA|543aa|down_2|NZ_CP021390.1_1118582_1120211_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|500aa|down_3|NZ_CP021390.1_1120389_1121889_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|412aa|down_4|NZ_CP021390.1_1121894_1123130_+	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|260aa|down_5|NZ_CP021390.1_1123156_1123936_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|425aa|down_6|NZ_CP021390.1_1124104_1125379_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|185aa|down_7|NZ_CP021390.1_1125390_1125945_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|195aa|down_8|NZ_CP021390.1_1125952_1126537_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|415aa|down_9|NZ_CP021390.1_1126657_1127902_-	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional
GCF_002838225.1_ASM283822v1	NZ_CP021390	Bifidobacterium breve strain DRBB26 chromosome, complete genome	3	1249863-1250041	3	CRISPRCasFinder	no		DEDDh,cas3,WYL	Orphan	CCGGTTTTCGGGTCGATGGTGGC	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL	NA|58aa|up_9|NZ_CP021390.1_1239909_1240083_+,NA|230aa|up_7|NZ_CP021390.1_1241055_1241745_-,NA|123aa|up_5|NZ_CP021390.1_1242214_1242583_-,NA|99aa|up_4|NZ_CP021390.1_1242612_1242909_-,NA|403aa|up_2|NZ_CP021390.1_1246171_1247380_-,NA|315aa|up_1|NZ_CP021390.1_1247379_1248324_-,NA|299aa|up_0|NZ_CP021390.1_1248383_1249280_-,NA|99aa|down_0|NZ_CP021390.1_1252631_1252928_-,NA|165aa|down_1|NZ_CP021390.1_1252999_1253494_-,NA|178aa|down_2|NZ_CP021390.1_1253669_1254203_-,NA|139aa|down_3|NZ_CP021390.1_1254275_1254692_-,NA|130aa|down_4|NZ_CP021390.1_1254688_1255078_-,NA|141aa|down_5|NZ_CP021390.1_1255079_1255502_-,NA|195aa|down_6|NZ_CP021390.1_1255498_1256083_-,NA|205aa|down_8|NZ_CP021390.1_1257021_1257636_-,NA|387aa|down_9|NZ_CP021390.1_1257659_1258820_-	NA|58aa|up_9|NZ_CP021390.1_1239909_1240083_+	NA	NA|290aa|up_8|NZ_CP021390.1_1240107_1240977_+	COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|230aa|up_7|NZ_CP021390.1_1241055_1241745_-	NA	NA|146aa|up_6|NZ_CP021390.1_1241741_1242179_-	pfam04688, Holin_SPP1, SPP1 phage holin	NA|123aa|up_5|NZ_CP021390.1_1242214_1242583_-	NA	NA|99aa|up_4|NZ_CP021390.1_1242612_1242909_-	NA	NA|1078aa|up_3|NZ_CP021390.1_1242927_1246161_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|403aa|up_2|NZ_CP021390.1_1246171_1247380_-	NA	NA|315aa|up_1|NZ_CP021390.1_1247379_1248324_-	NA	NA|299aa|up_0|NZ_CP021390.1_1248383_1249280_-	NA	NA|99aa|down_0|NZ_CP021390.1_1252631_1252928_-	NA	NA|165aa|down_1|NZ_CP021390.1_1252999_1253494_-	NA	NA|178aa|down_2|NZ_CP021390.1_1253669_1254203_-	NA	NA|139aa|down_3|NZ_CP021390.1_1254275_1254692_-	NA	NA|130aa|down_4|NZ_CP021390.1_1254688_1255078_-	NA	NA|141aa|down_5|NZ_CP021390.1_1255079_1255502_-	NA	NA|195aa|down_6|NZ_CP021390.1_1255498_1256083_-	NA	NA|286aa|down_7|NZ_CP021390.1_1256147_1257005_-	TIGR04387, hypothetical_protein, major capsid protein, N4-gp56 family	NA|205aa|down_8|NZ_CP021390.1_1257021_1257636_-	NA	NA|387aa|down_9|NZ_CP021390.1_1257659_1258820_-	NA
GCF_002838225.1_ASM283822v1	NZ_CP021390	Bifidobacterium breve strain DRBB26 chromosome, complete genome	4	2122888-2123034	4	CRISPRCasFinder	no		DEDDh,cas3,WYL	Orphan	AATCTCCTAAAATCCTGTCACTAAG	25	1	1	2122913-2122948	NZ_CP021390.1_2124250-2124285	NA	2	2	Orphan	DEDDh,cas3,WYL	NA|702aa|up_3|NZ_CP021390.1_2118078_2120184_+,NA|318aa|down_0|NZ_CP021390.1_2123148_2124102_+	NA|144aa|up_9|NZ_CP021390.1_2101554_2101986_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|3171aa|up_8|NZ_CP021390.1_2102800_2112313_-	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|541aa|up_7|NZ_CP021390.1_2112351_2113974_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|623aa|up_6|NZ_CP021390.1_2113966_2115835_-	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|181aa|up_5|NZ_CP021390.1_2116403_2116946_+	pfam02632, BioY, BioY family	NA|320aa|up_4|NZ_CP021390.1_2116947_2117907_-	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|702aa|up_3|NZ_CP021390.1_2118078_2120184_+	NA	NA|286aa|up_2|NZ_CP021390.1_2120262_2121120_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|231aa|up_1|NZ_CP021390.1_2121392_2122085_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|144aa|up_0|NZ_CP021390.1_2122100_2122532_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|318aa|down_0|NZ_CP021390.1_2123148_2124102_+	NA	NA|276aa|down_1|NZ_CP021390.1_2124470_2125298_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|76aa|down_2|NZ_CP021390.1_2125330_2125558_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|402aa|down_3|NZ_CP021390.1_2125887_2127093_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|421aa|down_4|NZ_CP021390.1_2127234_2128497_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|378aa|down_5|NZ_CP021390.1_2128592_2129726_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|564aa|down_6|NZ_CP021390.1_2129832_2131524_-	PRK12296, obgE, GTPase CgtA; Reviewed	NA|84aa|down_7|NZ_CP021390.1_2131590_2131842_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP021390.1_2131864_2132173_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|1024aa|down_9|NZ_CP021390.1_2132359_2135431_-	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family
GCF_002838225.1_ASM283822v1	NZ_CP021390	Bifidobacterium breve strain DRBB26 chromosome, complete genome	5	2278214-2278290	5	CRISPRCasFinder	no		DEDDh,cas3,WYL	Orphan	CCCAACCAATCGAAGAACCACCCCG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL	NA|90aa|up_9|NZ_CP021390.1_2261674_2261944_+,NA	NA|90aa|up_9|NZ_CP021390.1_2261674_2261944_+	NA	NA|350aa|up_8|NZ_CP021390.1_2262063_2263113_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|473aa|up_7|NZ_CP021390.1_2263742_2265161_-	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|314aa|up_6|NZ_CP021390.1_2265265_2266207_+	pfam02424, ApbE, ApbE family	NA|610aa|up_5|NZ_CP021390.1_2266215_2268045_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|623aa|up_4|NZ_CP021390.1_2268176_2270045_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|174aa|up_3|NZ_CP021390.1_2270228_2270750_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|508aa|up_2|NZ_CP021390.1_2271685_2273209_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|1253aa|up_1|NZ_CP021390.1_2273461_2277220_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|234aa|up_0|NZ_CP021390.1_2277229_2277931_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|491aa|down_0|NZ_CP021390.1_2278412_2279885_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|202aa|down_1|NZ_CP021390.1_2279936_2280542_-	pfam04854, DUF624, Protein of unknown function, DUF624	NA|281aa|down_2|NZ_CP021390.1_2280692_2281535_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|285aa|down_3|NZ_CP021390.1_2281534_2282389_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|339aa|down_4|NZ_CP021390.1_2282759_2283776_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|443aa|down_5|NZ_CP021390.1_2283983_2285312_-	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein	NA|233aa|down_6|NZ_CP021390.1_2285724_2286423_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|126aa|down_7|NZ_CP021390.1_2286509_2286887_+	pfam14019, DUF4235, Protein of unknown function (DUF4235)	NA|256aa|down_8|NZ_CP021390.1_2286982_2287750_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|916aa|down_9|NZ_CP021390.1_2287915_2290663_+	COG1511, COG1511, Predicted membrane protein [Function unknown]
