assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002831585.1_ASM283158v1	NZ_CP025113	Bradyrhizobium sp. SK17 strain CBNU chromosome, complete genome	1	584243-584322	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,RT	Orphan	GAGCCCGGAATCCATCGGGCAAC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,RT	NA|156aa|up_9|NZ_CP025113.1_573635_574103_-,NA|102aa|down_3|NZ_CP025113.1_587851_588157_+,NA|186aa|down_4|NZ_CP025113.1_588397_588955_+,NA|67aa|down_8|NZ_CP025113.1_593323_593524_-,NA|368aa|down_9|NZ_CP025113.1_593523_594627_-	NA|156aa|up_9|NZ_CP025113.1_573635_574103_-	NA	NA|553aa|up_8|NZ_CP025113.1_574380_576039_+	PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed	NA|532aa|up_7|NZ_CP025113.1_576243_577839_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|395aa|up_6|NZ_CP025113.1_577908_579093_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|116aa|up_5|NZ_CP025113.1_579168_579516_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|483aa|up_4|NZ_CP025113.1_579620_581069_+	cd14775, TrHb2_O-like, Truncated hemoglobins, group 2 (O); uncharacterized subgroup	NA|117aa|up_3|NZ_CP025113.1_581175_581526_+	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|356aa|up_2|NZ_CP025113.1_581656_582724_-	cd03532, Rieske_RO_Alpha_VanA_DdmC, Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth	NA|303aa|up_1|NZ_CP025113.1_582830_583739_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|121aa|up_0|NZ_CP025113.1_583845_584208_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|266aa|down_0|NZ_CP025113.1_584466_585264_+	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|271aa|down_1|NZ_CP025113.1_585389_586202_+	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|390aa|down_2|NZ_CP025113.1_586295_587465_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|102aa|down_3|NZ_CP025113.1_587851_588157_+	NA	NA|186aa|down_4|NZ_CP025113.1_588397_588955_+	NA	NA|706aa|down_5|NZ_CP025113.1_588981_591099_+	cd07550, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|280aa|down_6|NZ_CP025113.1_591095_591935_+	pfam12787, EcsC, EcsC protein family	NA|411aa|down_7|NZ_CP025113.1_591965_593198_+	pfam04286, DUF445, Protein of unknown function (DUF445)	NA|67aa|down_8|NZ_CP025113.1_593323_593524_-	NA	NA|368aa|down_9|NZ_CP025113.1_593523_594627_-	NA
GCF_002831585.1_ASM283158v1	NZ_CP025113	Bradyrhizobium sp. SK17 strain CBNU chromosome, complete genome	2	2456688-2456799	2	CRISPRCasFinder	no	csa3	csa3,WYL,DEDDh,cas3,RT	Type I-A	TTCCGAAAGGATCATGCTCAAACAAG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,RT	NA|90aa|up_5|NZ_CP025113.1_2452132_2452402_-,NA|141aa|up_2|NZ_CP025113.1_2454623_2455046_-,NA|97aa|up_1|NZ_CP025113.1_2455159_2455450_-,NA|122aa|down_9|NZ_CP025113.1_2465017_2465383_+	NA|426aa|up_9|NZ_CP025113.1_2449050_2450328_+	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]	NA|137aa|up_8|NZ_CP025113.1_2450677_2451088_+	pfam13564, DoxX_2, DoxX-like family	NA|179aa|up_7|NZ_CP025113.1_2451153_2451690_+	cd07818, SRPBCC_1, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|137aa|up_6|NZ_CP025113.1_2451767_2452178_+	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins	NA|90aa|up_5|NZ_CP025113.1_2452132_2452402_-	NA	NA|251aa|up_4|NZ_CP025113.1_2452424_2453177_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|302aa|up_3|NZ_CP025113.1_2453308_2454214_-	cd08420, PBP2_CysL_like, C-terminal substrate binding domain of LysR-type transcriptional regulator CysL, which activates the transcription of the cysJI operon encoding sulfite reductase, contains the type 2 periplasmic binding fold	NA|141aa|up_2|NZ_CP025113.1_2454623_2455046_-	NA	NA|97aa|up_1|NZ_CP025113.1_2455159_2455450_-	NA	NA|338aa|up_0|NZ_CP025113.1_2455612_2456626_-	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|251aa|down_0|NZ_CP025113.1_2456865_2457618_+	PRK00235, cobS, cobalamin synthase; Reviewed	NA|189aa|down_1|NZ_CP025113.1_2457625_2458192_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|263aa|down_2|NZ_CP025113.1_2458216_2459005_-	cd05233, SDR_c, classical (c) SDRs	NA|557aa|down_3|NZ_CP025113.1_2459179_2460850_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|218aa|down_4|NZ_CP025113.1_2461354_2462008_+	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|124aa|down_5|NZ_CP025113.1_2462154_2462526_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|403aa|down_6|NZ_CP025113.1_2462606_2463815_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|139aa|down_7|NZ_CP025113.1_2463938_2464355_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|142aa|down_8|NZ_CP025113.1_2464510_2464936_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|down_9|NZ_CP025113.1_2465017_2465383_+	NA
GCF_002831585.1_ASM283158v1	NZ_CP025113	Bradyrhizobium sp. SK17 strain CBNU chromosome, complete genome	3	6920997-6921118	3	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,RT	Orphan	GGGGCAGTGATAGCGACGCGGGCATGCAATGCC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,RT	NA|98aa|up_9|NZ_CP025113.1_6910985_6911279_+,NA|424aa|down_0|NZ_CP025113.1_6923026_6924298_+,NA|90aa|down_5|NZ_CP025113.1_6929928_6930198_-	NA|98aa|up_9|NZ_CP025113.1_6910985_6911279_+	NA	NA|210aa|up_8|NZ_CP025113.1_6911381_6912011_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|239aa|up_7|NZ_CP025113.1_6912120_6912837_-	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter	NA|615aa|up_6|NZ_CP025113.1_6912817_6914662_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|288aa|up_5|NZ_CP025113.1_6914661_6915525_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|386aa|up_4|NZ_CP025113.1_6915532_6916690_-	cd19986, PBP1_ABC_HAAT-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides	NA|239aa|up_3|NZ_CP025113.1_6916950_6917667_+	pfam03472, Autoind_bind, Autoinducer binding domain	NA|211aa|up_2|NZ_CP025113.1_6917756_6918389_+	COG3916, LasI, N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|288aa|up_1|NZ_CP025113.1_6918470_6919334_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|500aa|up_0|NZ_CP025113.1_6919333_6920833_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|424aa|down_0|NZ_CP025113.1_6923026_6924298_+	NA	NA|260aa|down_1|NZ_CP025113.1_6924349_6925129_-	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional	NA|700aa|down_2|NZ_CP025113.1_6925206_6927306_-	cd02766, MopB_3, The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	NA|346aa|down_3|NZ_CP025113.1_6927429_6928467_-	cd13547, PBP2_Fbp_like_2, Substrate binding domain of an uncharacterized ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|359aa|down_4|NZ_CP025113.1_6928780_6929857_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|90aa|down_5|NZ_CP025113.1_6929928_6930198_-	NA	NA|248aa|down_6|NZ_CP025113.1_6930335_6931079_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|280aa|down_7|NZ_CP025113.1_6931358_6932198_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|355aa|down_8|NZ_CP025113.1_6932201_6933266_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|262aa|down_9|NZ_CP025113.1_6933262_6934048_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
