The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017999	Rhizobium sp. Y9 chromosome 1, complete sequence	2746556	624527	631902	2746556	tail,portal,capsid,protease,head	Geobacillus_phage(33.33%)	11	NA	NA
WP_004440739.1|624527_625694_+|portal	phage portal protein	portal	W8ECU7	Geobacillus_phage	38.7	4.6e-63
WP_003509186.1|625881_626202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004440741.1|626230_626821_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	44.1	1.4e-28
WP_004440743.1|626852_628121_+|capsid	phage major capsid protein	capsid	Q3HQT0	Burkholderia_phage	42.1	6.7e-76
WP_004440746.1|628291_628861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004440748.1|628864_629206_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_004440751.1|629202_629598_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_081859385.1|629604_630714_-	MFS transporter	NA	NA	NA	NA	NA
WP_004440755.1|630893_631301_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_004440758.1|631300_631660_+	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_072494180.1|631656_631902_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
>prophage 2
NZ_CP017999	Rhizobium sp. Y9 chromosome 1, complete sequence	2746556	1281132	1289389	2746556	tRNA	uncultured_Mediterranean_phage(66.67%)	8	NA	NA
WP_004442081.1|1281132_1282665_+	AMP-binding protein	NA	A0A2K9L3I8	Tupanvirus	24.4	4.8e-20
WP_081859541.1|1282744_1283926_+	type III PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_034498956.1|1283926_1285084_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	42.7	9.9e-42
WP_004442089.1|1285275_1286406_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	53.0	2.1e-105
WP_004442091.1|1286405_1287488_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_004442093.1|1287750_1288260_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	58.8	6.5e-46
WP_004442095.1|1288296_1288866_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.8	8.5e-47
WP_004442098.1|1288894_1289389_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.7	1.9e-26
>prophage 3
NZ_CP017999	Rhizobium sp. Y9 chromosome 1, complete sequence	2746556	1305766	1314169	2746556	tRNA	uncultured_Mediterranean_phage(75.0%)	9	NA	NA
WP_082055473.1|1305766_1307377_-	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	I3PV24	Clostridium_phage	30.4	1.1e-11
WP_080822813.1|1307677_1308319_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1J0MC37	Streptomyces_phage	35.1	1.0e-11
WP_004442133.1|1308327_1309098_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	29.8	1.8e-23
WP_004442134.1|1309271_1310555_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.8	1.8e-97
WP_022556270.1|1310656_1311460_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	40.7	2.4e-42
WP_004442140.1|1311456_1312203_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003509722.1|1312259_1312466_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	69.8	2.1e-08
WP_004442146.1|1312596_1313331_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.1	3.4e-40
WP_034498970.1|1313323_1314169_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	34.7	1.5e-34
>prophage 1
NZ_CP018001	Rhizobium sp. Y9 plasmid pY9, complete sequence	481964	23446	52406	481964	integrase,transposase	Leptospira_phage(28.57%)	26	25688:25702	35026:35040
WP_082055532.1|23446_24487_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_044460332.1|24785_25952_+	DUF1612 and helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
25688:25702	attL	GCTAGCGGCGGCAGA	NA	NA	NA	NA
WP_152625462.1|26283_28740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157814270.1|28997_29348_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_100911634.1|29546_30776_+|integrase	tyrosine-type recombinase/integrase	integrase	A7XX23	Thermus_virus	27.4	3.6e-10
WP_100911635.1|30769_31684_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_100911636.1|31680_32670_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	29.3	6.1e-08
WP_157814271.1|32818_33082_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_100911638.1|33156_34746_+|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	33.6	3.1e-70
WP_100911796.1|35496_36942_+	hypothetical protein	NA	NA	NA	NA	NA
35026:35040	attR	GCTAGCGGCGGCAGA	NA	NA	NA	NA
WP_100911639.1|36964_37444_+	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_100911640.1|37476_37965_+	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_100911641.1|37967_38477_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
WP_100911642.1|38926_39349_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_100911643.1|39592_40474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100911644.1|40479_41088_-	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA	NA
WP_100911645.1|41084_42173_-	His-Xaa-Ser system radical SAM maturase HxsC	NA	S5WIP3	Leptospira_phage	33.3	1.9e-42
WP_100911646.1|42169_43579_-	His-Xaa-Ser system radical SAM maturase HxsB	NA	S5VT21	Leptospira_phage	25.5	1.2e-28
WP_100911797.1|43559_43808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100911798.1|43913_45050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100911647.1|45353_45944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100911648.1|46123_47287_+	DUF2235 domain-containing protein	NA	NA	NA	NA	NA
WP_157814272.1|47544_48162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100911650.1|48479_49605_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	62.4	1.0e-91
WP_044460062.1|49752_50319_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_100911651.1|51178_52406_+|transposase	IS3 family transposase	transposase	A0A1B0Z042	Pseudomonas_phage	48.6	2.1e-66
