assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002813615.1_ASM281361v1	NZ_CP016355	Lactobacillus paracasei subsp. paracasei strain TMW 1.1434 chromosome, complete genome	1	698417-706375	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	csa3,DinG,WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csn2,cas2,cas9	Type I-E	GTTTTCCCCGCACATGCGGGGGTGATCC,GTTTTCCCCGCACATGCGGGGGTGATCC,GTTTTCCCCGCACATGCGGGGGTGATCC	28,28,28	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	130,130,101	130	TypeI-E	csa3,DinG,WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csn2,cas2,cas9	NA|481aa|up_9|NZ_CP016355.1_686330_687773_-,NA|186aa|down_2|NZ_CP016355.1_708879_709437_+,NA|304aa|down_8|NZ_CP016355.1_716981_717893_+	NA|481aa|up_9|NZ_CP016355.1_686330_687773_-	NA	NA|228aa|up_8|NZ_CP016355.1_688045_688729_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	cas3|923aa|up_7|NZ_CP016355.1_689061_691830_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|570aa|up_6|NZ_CP016355.1_691810_693520_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|201aa|up_5|NZ_CP016355.1_693516_694119_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|362aa|up_4|NZ_CP016355.1_694111_695197_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|237aa|up_3|NZ_CP016355.1_695168_695879_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|216aa|up_2|NZ_CP016355.1_695894_696542_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|316aa|up_1|NZ_CP016355.1_696546_697494_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|302aa|up_0|NZ_CP016355.1_697490_698396_+	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|228aa|down_0|NZ_CP016355.1_706488_707172_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|443aa|down_1|NZ_CP016355.1_707350_708679_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily	NA|186aa|down_2|NZ_CP016355.1_708879_709437_+	NA	NA|262aa|down_3|NZ_CP016355.1_709958_710745_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|83aa|down_4|NZ_CP016355.1_711512_711761_-	pfam08349, DUF1722, Protein of unknown function (DUF1722)	NA|369aa|down_5|NZ_CP016355.1_711954_713061_-	cd01117, YbiR_permease, Putative anion permease YbiR	NA|307aa|down_6|NZ_CP016355.1_714229_715150_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|238aa|down_7|NZ_CP016355.1_715562_716276_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|304aa|down_8|NZ_CP016355.1_716981_717893_+	NA	NA|463aa|down_9|NZ_CP016355.1_718165_719554_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein
GCF_002813615.1_ASM281361v1	NZ_CP016355	Lactobacillus paracasei subsp. paracasei strain TMW 1.1434 chromosome, complete genome	2	1217669-1219090	2	CRT	no		csa3,DinG,WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csn2,cas2,cas9	Orphan	NNNNNNNNNNNNATCGACGAGTGCTTCGACAAGCGTCAGTCAATCAACCAGTTC	54	20	34	1217711-1217740|1217783-1217812|1217855-1217884|1217927-1217956|1217927-1217956|1217999-1218028|1218071-1218100|1218143-1218160|1218143-1218160|1218203-1218220|1218203-1218220|1218203-1218220|1218203-1218220|1218203-1218220|1218263-1218292|1218263-1218292|1218335-1218352|1218335-1218352|1218335-1218352|1218395-1218424|1218395-1218424|1218467-1218496|1218539-1218556|1218539-1218556|1218599-1218628|1218671-1218700|1218671-1218700|1218743-1218772|1218815-1218832|1218815-1218832|1218875-1218904|1218947-1218976|1218947-1218976|1219019-1219048	NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1219091-1219120|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217668|NZ_CP016355.1_1219091-1219108|NZ_CP016355.1_1219091-1219108|NZ_CP016355.1_1217651-1217668|NZ_CP016355.1_1608195-1608178|NZ_CP016355.1_1608187-1608204|NZ_CP016355.1_2228697-2228680|NZ_CP016355.1_1217639-1217668|NZ_CP016355.1_1219079-1219108|NZ_CP016355.1_1217651-1217668|NZ_CP016355.1_1219091-1219108|NZ_CP016355.1_2685958-2685975|NZ_CP016355.1_1219091-1219120|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217668|NZ_CP016355.1_1219091-1219108|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1219091-1219120|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217668|NZ_CP016355.1_1219091-1219108|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1219091-1219120|NZ_CP016355.1_1217651-1217680|NZ_CP016355.1_1217651-1217680	NA	20	20	Orphan	csa3,DinG,WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csn2,cas2,cas9	NA|86aa|up_3|NZ_CP016355.1_1215606_1215864_+,NA|146aa|up_2|NZ_CP016355.1_1215960_1216398_+,NA|50aa|up_1|NZ_CP016355.1_1216410_1216560_+,NA|302aa|up_0|NZ_CP016355.1_1216572_1217478_+,NA|219aa|down_1|NZ_CP016355.1_1220650_1221307_+,NA|107aa|down_4|NZ_CP016355.1_1223838_1224159_+	NA|433aa|up_9|NZ_CP016355.1_1210061_1211360_+	cd04279, ZnMc_MMP_like_1, Zinc-dependent metalloprotease; MMP_like sub-family 1	NA|354aa|up_8|NZ_CP016355.1_1211519_1212581_-	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs	NA|235aa|up_7|NZ_CP016355.1_1212589_1213294_-	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	NA|209aa|up_6|NZ_CP016355.1_1213437_1214064_-	PRK09814, PRK09814, sugar transferase	NA|281aa|up_5|NZ_CP016355.1_1214403_1215246_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|84aa|up_4|NZ_CP016355.1_1215299_1215551_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|86aa|up_3|NZ_CP016355.1_1215606_1215864_+	NA	NA|146aa|up_2|NZ_CP016355.1_1215960_1216398_+	NA	NA|50aa|up_1|NZ_CP016355.1_1216410_1216560_+	NA	NA|302aa|up_0|NZ_CP016355.1_1216572_1217478_+	NA	NA|235aa|down_0|NZ_CP016355.1_1219241_1219946_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|219aa|down_1|NZ_CP016355.1_1220650_1221307_+	NA	NA|246aa|down_2|NZ_CP016355.1_1221986_1222724_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|331aa|down_3|NZ_CP016355.1_1222871_1223864_+	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324)	NA|107aa|down_4|NZ_CP016355.1_1223838_1224159_+	NA	NA|483aa|down_5|NZ_CP016355.1_1225980_1227429_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|618aa|down_6|NZ_CP016355.1_1227509_1229363_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|277aa|down_7|NZ_CP016355.1_1229449_1230280_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|888aa|down_8|NZ_CP016355.1_1230822_1233486_-	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|580aa|down_9|NZ_CP016355.1_1233796_1235536_+	pfam09586, YfhO, Bacterial membrane protein YfhO
GCF_002813615.1_ASM281361v1	NZ_CP016355	Lactobacillus paracasei subsp. paracasei strain TMW 1.1434 chromosome, complete genome	3	1946752-1946873	2	CRISPRCasFinder	no		csa3,DinG,WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csn2,cas2,cas9	Orphan	TGAGGTCCTTATGTGCAGGTTTCTGCGCCTGTTCGCGC	38	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csn2,cas2,cas9	NA|146aa|up_4|NZ_CP016355.1_1938114_1938552_-,NA|125aa|down_7|NZ_CP016355.1_1957554_1957929_-,NA|141aa|down_8|NZ_CP016355.1_1958068_1958491_-	NA|155aa|up_9|NZ_CP016355.1_1933941_1934406_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|up_8|NZ_CP016355.1_1934398_1934851_-	PRK04351, PRK04351, SprT family protein	NA|251aa|up_7|NZ_CP016355.1_1934992_1935745_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|300aa|up_6|NZ_CP016355.1_1935737_1936637_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|332aa|up_5|NZ_CP016355.1_1936633_1937629_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|146aa|up_4|NZ_CP016355.1_1938114_1938552_-	NA	NA|887aa|up_3|NZ_CP016355.1_1938688_1941349_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|276aa|up_2|NZ_CP016355.1_1943074_1943902_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|up_1|NZ_CP016355.1_1943904_1945098_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|up_0|NZ_CP016355.1_1945101_1946565_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|down_0|NZ_CP016355.1_1947010_1947712_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|down_1|NZ_CP016355.1_1947736_1948882_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|down_2|NZ_CP016355.1_1948988_1949786_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|down_3|NZ_CP016355.1_1949798_1951775_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|down_4|NZ_CP016355.1_1952102_1952930_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|down_5|NZ_CP016355.1_1952991_1954458_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_6|NZ_CP016355.1_1954810_1957129_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_7|NZ_CP016355.1_1957554_1957929_-	NA	NA|141aa|down_8|NZ_CP016355.1_1958068_1958491_-	NA	NA|477aa|down_9|NZ_CP016355.1_1959053_1960484_+	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily
GCF_002813615.1_ASM281361v1	NZ_CP016355	Lactobacillus paracasei subsp. paracasei strain TMW 1.1434 chromosome, complete genome	4	2308644-2310131	3,3,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csn2,cas2,cas9	Type II-C,Type II-B,Type II-A	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	22,22,21	22	TypeII-C,TypeII-B,TypeII-A	csa3,DinG,WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csn2,cas2,cas9	NA|368aa|up_0|NZ_CP016355.1_2307259_2308363_-,NA|265aa|down_4|NZ_CP016355.1_2316463_2317258_-,NA|389aa|down_5|NZ_CP016355.1_2317258_2318425_-,NA|108aa|down_7|NZ_CP016355.1_2319216_2319540_+	NA|444aa|up_9|NZ_CP016355.1_2294323_2295655_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|473aa|up_8|NZ_CP016355.1_2295860_2297279_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|189aa|up_7|NZ_CP016355.1_2297570_2298137_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_6|NZ_CP016355.1_2298263_2299712_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|613aa|up_5|NZ_CP016355.1_2299882_2301721_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|286aa|up_4|NZ_CP016355.1_2302172_2303030_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NZ_CP016355.1_2303167_2304799_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NZ_CP016355.1_2304795_2306487_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_CP016355.1_2306683_2307109_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|up_0|NZ_CP016355.1_2307259_2308363_-	NA	csn2|226aa|down_0|NZ_CP016355.1_2310155_2310833_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP016355.1_2310829_2311135_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP016355.1_2311112_2312018_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1362aa|down_3|NZ_CP016355.1_2312215_2316301_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|265aa|down_4|NZ_CP016355.1_2316463_2317258_-	NA	NA|389aa|down_5|NZ_CP016355.1_2317258_2318425_-	NA	NA|125aa|down_6|NZ_CP016355.1_2318648_2319023_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|108aa|down_7|NZ_CP016355.1_2319216_2319540_+	NA	NA|576aa|down_8|NZ_CP016355.1_2319611_2321339_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_9|NZ_CP016355.1_2321319_2323062_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
GCF_002813615.1_ASM281361v1	NZ_CP016356	Lactobacillus paracasei subsp. paracasei strain TMW 1.1434 plasmid pL11434-1, complete sequence	1	13533-13683	1	PILER-CR	no			Orphan	TTCTTGCGAAGAACCGATTTTGAGACTTTCGCGTGGCTCTAGG	43	0	0	NA	NA	NA	2	2	Orphan	csa3,DinG,WYL,DEDDh,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csn2,cas2,cas9	NA|63aa|up_9|NZ_CP016356.1_3392_3581_-,NA|85aa|up_8|NZ_CP016356.1_3655_3910_-,NA|92aa|up_5|NZ_CP016356.1_9988_10264_-,NA|77aa|up_4|NZ_CP016356.1_10250_10481_-,NA|73aa|up_3|NZ_CP016356.1_10473_10692_-,NA|88aa|up_2|NZ_CP016356.1_10718_10982_-,NA|246aa|up_0|NZ_CP016356.1_12319_13057_-,NA|100aa|down_1|NZ_CP016356.1_15456_15756_+,NA|136aa|down_2|NZ_CP016356.1_15941_16349_-,NA|128aa|down_4|NZ_CP016356.1_17630_18014_-,NA|140aa|down_7|NZ_CP016356.1_19616_20036_+,NA|82aa|down_9|NZ_CP016356.1_21314_21560_+	NA|63aa|up_9|NZ_CP016356.1_3392_3581_-	NA	NA|85aa|up_8|NZ_CP016356.1_3655_3910_-	NA	NA|130aa|up_7|NZ_CP016356.1_4354_4744_-	cd13831, HU, histone-like DNA-binding protein HU	NA|658aa|up_6|NZ_CP016356.1_4918_6892_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|92aa|up_5|NZ_CP016356.1_9988_10264_-	NA	NA|77aa|up_4|NZ_CP016356.1_10250_10481_-	NA	NA|73aa|up_3|NZ_CP016356.1_10473_10692_-	NA	NA|88aa|up_2|NZ_CP016356.1_10718_10982_-	NA	NA|80aa|up_1|NZ_CP016356.1_11495_11735_-	pfam17362, pXO2-34, Family of unknown function	NA|246aa|up_0|NZ_CP016356.1_12319_13057_-	NA	NA|266aa|down_0|NZ_CP016356.1_14643_15441_+	pfam13614, AAA_31, AAA domain	NA|100aa|down_1|NZ_CP016356.1_15456_15756_+	NA	NA|136aa|down_2|NZ_CP016356.1_15941_16349_-	NA	NA|431aa|down_3|NZ_CP016356.1_16341_17634_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|128aa|down_4|NZ_CP016356.1_17630_18014_-	NA	NA|84aa|down_5|NZ_CP016356.1_18344_18596_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|281aa|down_6|NZ_CP016356.1_18649_19492_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|140aa|down_7|NZ_CP016356.1_19616_20036_+	NA	NA|415aa|down_8|NZ_CP016356.1_20028_21273_+	pfam18555, MobL, MobL relaxases	NA|82aa|down_9|NZ_CP016356.1_21314_21560_+	NA
