assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002813535.1_ASM281353v1	NZ_CP025076	Streptococcus pneumoniae strain BHN97x chromosome, complete genome	1	818351-818436	1	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG	Orphan	CTTTTTTTGAAACGTTTCATTTTT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG	NA|60aa|up_6|NZ_CP025076.1_810877_811057_-,NA|80aa|up_5|NZ_CP025076.1_811221_811461_-,NA	NA|157aa|up_9|NZ_CP025076.1_809311_809782_-	pfam11217, DUF3013, Protein of unknown function (DUF3013)	NA|151aa|up_8|NZ_CP025076.1_810072_810525_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|60aa|up_7|NZ_CP025076.1_810561_810741_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|60aa|up_6|NZ_CP025076.1_810877_811057_-	NA	NA|80aa|up_5|NZ_CP025076.1_811221_811461_-	NA	NA|424aa|up_4|NZ_CP025076.1_811730_813002_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|440aa|up_3|NZ_CP025076.1_813548_814868_-	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|539aa|up_2|NZ_CP025076.1_814877_816494_-	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|297aa|up_1|NZ_CP025076.1_816522_817413_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|306aa|up_0|NZ_CP025076.1_817423_818341_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|334aa|down_0|NZ_CP025076.1_818492_819494_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|494aa|down_1|NZ_CP025076.1_819855_821337_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|55aa|down_2|NZ_CP025076.1_821779_821944_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|189aa|down_3|NZ_CP025076.1_822027_822594_+	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|57aa|down_4|NZ_CP025076.1_822605_822776_+	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|203aa|down_5|NZ_CP025076.1_822814_823423_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|68aa|down_6|NZ_CP025076.1_823453_823657_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|96aa|down_7|NZ_CP025076.1_824348_824636_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|257aa|down_8|NZ_CP025076.1_824913_825684_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|283aa|down_9|NZ_CP025076.1_825698_826547_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1
GCF_002813535.1_ASM281353v1	NZ_CP025076	Streptococcus pneumoniae strain BHN97x chromosome, complete genome	2	1390224-1390319	2	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG	Orphan	AATGTGTAAGATTTTTATATATAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG	NA|87aa|up_9|NZ_CP025076.1_1380345_1380606_+,NA|107aa|down_7|NZ_CP025076.1_1398083_1398404_-	NA|87aa|up_9|NZ_CP025076.1_1380345_1380606_+	NA	NA|310aa|up_8|NZ_CP025076.1_1381098_1382028_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|308aa|up_7|NZ_CP025076.1_1382041_1382965_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|492aa|up_6|NZ_CP025076.1_1383222_1384698_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|329aa|up_5|NZ_CP025076.1_1384969_1385956_+	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|287aa|up_4|NZ_CP025076.1_1386230_1387091_+	pfam14132, DUF4299, Domain of unknown function (DUF4299)	NA|355aa|up_3|NZ_CP025076.1_1387268_1388333_-	pfam05262, Borrelia_P83, Borrelia P83/100 protein	NA|304aa|up_2|NZ_CP025076.1_1388395_1389307_-	pfam13349, DUF4097, Putative adhesin	NA|198aa|up_1|NZ_CP025076.1_1389299_1389893_-	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|109aa|up_0|NZ_CP025076.1_1389879_1390206_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|389aa|down_0|NZ_CP025076.1_1390344_1391511_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|386aa|down_1|NZ_CP025076.1_1391568_1392726_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|617aa|down_2|NZ_CP025076.1_1392767_1394618_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|211aa|down_3|NZ_CP025076.1_1395010_1395643_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|291aa|down_4|NZ_CP025076.1_1395664_1396537_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|224aa|down_5|NZ_CP025076.1_1396545_1397217_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|191aa|down_6|NZ_CP025076.1_1397458_1398031_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|107aa|down_7|NZ_CP025076.1_1398083_1398404_-	NA	NA|96aa|down_8|NZ_CP025076.1_1398828_1399116_+	TIGR01653, hypothetical_protein, bacteriocin, lactococcin 972 family	NA|703aa|down_9|NZ_CP025076.1_1399167_1401276_+	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein
GCF_002813535.1_ASM281353v1	NZ_CP025076	Streptococcus pneumoniae strain BHN97x chromosome, complete genome	3	1809287-1809417	3	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG	Orphan	GCAAAACCTGCAGCCCCAAAAGTAAGTGCAGAAAAGAAAGCCGAAAA	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG	NA|128aa|up_9|NZ_CP025076.1_1803057_1803441_+,NA|83aa|up_7|NZ_CP025076.1_1804223_1804472_+,NA|260aa|down_1|NZ_CP025076.1_1812866_1813646_+,NA|61aa|down_2|NZ_CP025076.1_1813647_1813830_+	NA|128aa|up_9|NZ_CP025076.1_1803057_1803441_+	NA	NA|230aa|up_8|NZ_CP025076.1_1803492_1804182_+	pfam02517, Abi, CAAX protease self-immunity	NA|83aa|up_7|NZ_CP025076.1_1804223_1804472_+	NA	NA|204aa|up_6|NZ_CP025076.1_1804501_1805113_+	pfam02517, Abi, CAAX protease self-immunity	NA|265aa|up_5|NZ_CP025076.1_1805274_1806069_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|212aa|up_4|NZ_CP025076.1_1806065_1806701_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|160aa|up_3|NZ_CP025076.1_1806826_1807306_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|379aa|up_2|NZ_CP025076.1_1807349_1808486_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|98aa|up_1|NZ_CP025076.1_1808507_1808801_+	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|100aa|up_0|NZ_CP025076.1_1808793_1809093_+	PRK07283, PRK07283, YlxQ-related RNA-binding protein	NA|117aa|down_0|NZ_CP025076.1_1812236_1812587_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|260aa|down_1|NZ_CP025076.1_1812866_1813646_+	NA	NA|61aa|down_2|NZ_CP025076.1_1813647_1813830_+	NA	NA|78aa|down_3|NZ_CP025076.1_1814278_1814512_+	pfam08984, DUF1858, Domain of unknown function (DUF1858)	NA|445aa|down_4|NZ_CP025076.1_1814511_1815846_+	COG2461, COG2461, Uncharacterized conserved protein [Function unknown]	NA|85aa|down_5|NZ_CP025076.1_1815855_1816110_+	pfam08930, DUF1912, Domain of unknown function (DUF1912)	NA|132aa|down_6|NZ_CP025076.1_1816205_1816601_+	PRK07758, PRK07758, hypothetical protein; Provisional	NA|187aa|down_7|NZ_CP025076.1_1817447_1818008_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|193aa|down_8|NZ_CP025076.1_1818007_1818586_+	pfam13238, AAA_18, AAA domain	NA|884aa|down_9|NZ_CP025076.1_1818578_1821230_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed
