assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	1	398355-398461	1	CRISPRCasFinder	no		csa3,PD-DExK,DEDDh,WYL,DinG	Orphan	GCCGATCGCGCGAAACCCATCAAGCAGCGCC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA,NA	NA|135aa|up_9|NZ_CP025030.1_387793_388198_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|391aa|up_8|NZ_CP025030.1_388194_389367_+	PRK06158, PRK06158, thiolase; Provisional	NA|507aa|up_7|NZ_CP025030.1_389402_390923_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|325aa|up_6|NZ_CP025030.1_390981_391956_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|319aa|up_5|NZ_CP025030.1_391975_392932_+	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]	NA|332aa|up_4|NZ_CP025030.1_392999_393995_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|300aa|up_3|NZ_CP025030.1_394251_395151_-	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|305aa|up_2|NZ_CP025030.1_395302_396217_+	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs	NA|287aa|up_1|NZ_CP025030.1_396224_397085_+	PLN02864, PLN02864, enoyl-CoA hydratase	NA|411aa|up_0|NZ_CP025030.1_397081_398314_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|508aa|down_0|NZ_CP025030.1_398633_400157_-	COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion]	NA|256aa|down_1|NZ_CP025030.1_400483_401251_-	PRK08252, PRK08252, crotonase/enoyl-CoA hydratase family protein	NA|304aa|down_2|NZ_CP025030.1_401529_402441_+	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|713aa|down_3|NZ_CP025030.1_402441_404580_+	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|180aa|down_4|NZ_CP025030.1_404576_405116_+	PRK08942, PRK08942, D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA|241aa|down_5|NZ_CP025030.1_405120_405843_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|269aa|down_6|NZ_CP025030.1_406069_406876_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|132aa|down_7|NZ_CP025030.1_406951_407347_+	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase	NA|178aa|down_8|NZ_CP025030.1_407362_407896_+	PRK12846, PRK12846, peptide deformylase; Reviewed	NA|410aa|down_9|NZ_CP025030.1_410443_411673_+	COG2715, SpmA, Uncharacterized membrane protein, required for spore maturation in B
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	2	704649-704750	2	CRISPRCasFinder	no		csa3,PD-DExK,DEDDh,WYL,DinG	Orphan	CGTAGGATGGGTGAAGCGCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA,NA	NA|833aa|up_9|NZ_CP025030.1_691836_694335_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|366aa|up_8|NZ_CP025030.1_694441_695539_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|593aa|up_7|NZ_CP025030.1_695600_697379_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|up_6|NZ_CP025030.1_697371_698460_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|286aa|up_5|NZ_CP025030.1_698619_699477_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|288aa|up_4|NZ_CP025030.1_699473_700337_+	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|242aa|up_3|NZ_CP025030.1_700342_701068_+	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|393aa|up_2|NZ_CP025030.1_701159_702338_+	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG	NA|278aa|up_1|NZ_CP025030.1_702334_703168_+	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA|424aa|up_0|NZ_CP025030.1_703271_704543_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|242aa|down_0|NZ_CP025030.1_704808_705534_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|239aa|down_1|NZ_CP025030.1_705530_706247_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|234aa|down_2|NZ_CP025030.1_706248_706950_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP025030.1_706978_707806_-	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|406aa|down_4|NZ_CP025030.1_707888_709106_-	PRK06107, PRK06107, aspartate transaminase	NA|225aa|down_5|NZ_CP025030.1_709102_709777_-	PRK06201, PRK06201, hypothetical protein; Validated	NA|297aa|down_6|NZ_CP025030.1_709992_710883_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|247aa|down_7|NZ_CP025030.1_710926_711667_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|442aa|down_8|NZ_CP025030.1_711663_712989_-	PRK07627, PRK07627, dihydroorotase; Provisional	NA|134aa|down_9|NZ_CP025030.1_714078_714480_-	PRK00109, PRK00109, Holliday junction resolvase RuvX
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	3	1106085-1106307	3	CRISPRCasFinder	no	WYL	csa3,PD-DExK,DEDDh,WYL,DinG	Unclear	GCTTTTTTCCTTGGGGCGGCCCGTCGGAAAAAAATGCCCCCACGCTGCGCACCCT	55	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA,NA	NA|353aa|up_9|NZ_CP025030.1_1096230_1097289_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|441aa|up_8|NZ_CP025030.1_1097285_1098608_-	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|457aa|up_7|NZ_CP025030.1_1098710_1100081_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|458aa|up_6|NZ_CP025030.1_1100080_1101454_-	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]	NA|270aa|up_5|NZ_CP025030.1_1101520_1102330_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|228aa|up_4|NZ_CP025030.1_1102369_1103053_-	PRK11280, PRK11280, hypothetical protein; Provisional	NA|76aa|up_3|NZ_CP025030.1_1103196_1103424_+	pfam12512, DUF3717, Protein of unknown function (DUF3717)	NA|205aa|up_2|NZ_CP025030.1_1103445_1104060_-	pfam02630, SCO1-SenC, SCO1/SenC	NA|298aa|up_1|NZ_CP025030.1_1104077_1104971_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|345aa|up_0|NZ_CP025030.1_1104984_1106019_-	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|192aa|down_0|NZ_CP025030.1_1106331_1106907_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|308aa|down_1|NZ_CP025030.1_1106996_1107920_-	cd06662, SURF1, SURF1 superfamily	NA|67aa|down_2|NZ_CP025030.1_1107956_1108157_+	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|292aa|down_3|NZ_CP025030.1_1108594_1109470_-	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|75aa|down_4|NZ_CP025030.1_1109508_1109733_-	pfam11174, DUF2970, Protein of unknown function (DUF2970)	NA|536aa|down_5|NZ_CP025030.1_1109898_1111506_-	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|386aa|down_6|NZ_CP025030.1_1111609_1112767_-	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II	NA|269aa|down_7|NZ_CP025030.1_1113067_1113874_+	cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|279aa|down_8|NZ_CP025030.1_1116808_1117645_+	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|295aa|down_9|NZ_CP025030.1_1117949_1118834_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	4	1367524-1367721	1,4	PILER-CR,CRISPRCasFinder	no		csa3,PD-DExK,DEDDh,WYL,DinG	Orphan	ATGTTCCACGTGAAACATGGAACTGGCATACCC,ATGTTCCACGTGAAACATGGAACT	33,24	0	0	NA	NA	NA:NA	2,1	2	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA,NA	NA|153aa|up_9|NZ_CP025030.1_1355259_1355718_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|459aa|up_8|NZ_CP025030.1_1355738_1357115_-	PRK01862, PRK01862, voltage-gated chloride channel ClcB	NA|226aa|up_7|NZ_CP025030.1_1357604_1358282_+	PRK15479, PRK15479, transcriptional regulator TctD	NA|459aa|up_6|NZ_CP025030.1_1358379_1359756_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|333aa|up_5|NZ_CP025030.1_1359873_1360872_+	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown]	NA|146aa|up_4|NZ_CP025030.1_1361004_1361442_+	pfam07331, TctB, Tripartite tricarboxylate transporter TctB family	NA|509aa|up_3|NZ_CP025030.1_1361438_1362965_+	COG3333, COG3333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|389aa|up_2|NZ_CP025030.1_1363064_1364231_-	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|352aa|up_1|NZ_CP025030.1_1364314_1365370_+	pfam05145, AbrB, Transition state regulatory protein AbrB	NA|69aa|up_0|NZ_CP025030.1_1365613_1365820_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|640aa|down_0|NZ_CP025030.1_1368060_1369980_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|242aa|down_1|NZ_CP025030.1_1369976_1370702_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|267aa|down_2|NZ_CP025030.1_1370698_1371499_+	pfam13614, AAA_31, AAA domain	NA|275aa|down_3|NZ_CP025030.1_1371508_1372333_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|308aa|down_4|NZ_CP025030.1_1372377_1373301_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|335aa|down_5|NZ_CP025030.1_1373293_1374298_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|298aa|down_6|NZ_CP025030.1_1374291_1375185_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|196aa|down_7|NZ_CP025030.1_1375302_1375890_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|929aa|down_8|NZ_CP025030.1_1375892_1378679_+	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]	NA|338aa|down_9|NZ_CP025030.1_1378880_1379894_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	5	1499263-1499367	5	CRISPRCasFinder	no		csa3,PD-DExK,DEDDh,WYL,DinG	Orphan	AAATTAGCAACAGCCATGCTCATGGAA	27	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA,NA	NA|59aa|up_9|NZ_CP025030.1_1484981_1485158_-	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site	NA|110aa|up_8|NZ_CP025030.1_1485189_1485519_+	PRK00446, cyaY, frataxin-like protein; Provisional	NA|817aa|up_7|NZ_CP025030.1_1485574_1488025_-	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|214aa|up_6|NZ_CP025030.1_1488139_1488781_+	PRK00131, aroK, shikimate kinase; Reviewed	NA|359aa|up_5|NZ_CP025030.1_1488777_1489854_+	PRK00002, aroB, 3-dehydroquinate synthase; Reviewed	NA|376aa|up_4|NZ_CP025030.1_1489878_1491006_+	PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional	NA|221aa|up_3|NZ_CP025030.1_1491042_1491705_-	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases	NA|954aa|up_2|NZ_CP025030.1_1491739_1494601_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|395aa|up_1|NZ_CP025030.1_1494790_1495975_+	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily	NA|175aa|up_0|NZ_CP025030.1_1496374_1496899_+	PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional	NA|932aa|down_0|NZ_CP025030.1_1500182_1502978_+	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|933aa|down_1|NZ_CP025030.1_1503182_1505981_+	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|934aa|down_2|NZ_CP025030.1_1506185_1508987_+	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|300aa|down_3|NZ_CP025030.1_1508987_1509887_-	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|389aa|down_4|NZ_CP025030.1_1510011_1511178_+	cd03326, MR_like_1, Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1	NA|736aa|down_5|NZ_CP025030.1_1511281_1513489_-	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|326aa|down_6|NZ_CP025030.1_1513632_1514610_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|243aa|down_7|NZ_CP025030.1_1514687_1515416_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|103aa|down_8|NZ_CP025030.1_1515721_1516030_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|103aa|down_9|NZ_CP025030.1_1516146_1516455_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	6	2067709-2067806	6	CRISPRCasFinder	no		csa3,PD-DExK,DEDDh,WYL,DinG	Orphan	TGCCGCGCTGCACCCATCCTACGG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA|206aa|up_0|NZ_CP025030.1_2066936_2067554_+,NA	NA|392aa|up_9|NZ_CP025030.1_2057920_2059096_-	cd06359, PBP1_Nba-like, type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway	NA|409aa|up_8|NZ_CP025030.1_2059208_2060435_-	PRK08163, PRK08163, 3-hydroxybenzoate 6-monooxygenase	NA|451aa|up_7|NZ_CP025030.1_2060454_2061807_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|343aa|up_6|NZ_CP025030.1_2061838_2062867_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|126aa|up_5|NZ_CP025030.1_2062859_2063237_-	smart00830, CM_2, Chorismate mutase type II	NA|213aa|up_4|NZ_CP025030.1_2063251_2063890_-	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|233aa|up_3|NZ_CP025030.1_2063901_2064600_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|359aa|up_2|NZ_CP025030.1_2064740_2065817_-	TIGR02272, gentisate_12-dioxygenase, gentisate 1,2-dioxygenase	NA|312aa|up_1|NZ_CP025030.1_2066001_2066937_+	TIGR02424, TF_pcaQ, pca operon transcription factor PcaQ	NA|206aa|up_0|NZ_CP025030.1_2066936_2067554_+	NA	NA|493aa|down_0|NZ_CP025030.1_2067994_2069473_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|1072aa|down_1|NZ_CP025030.1_2069539_2072755_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|400aa|down_2|NZ_CP025030.1_2072781_2073981_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|361aa|down_3|NZ_CP025030.1_2074363_2075446_+	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|372aa|down_4|NZ_CP025030.1_2075598_2076714_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|261aa|down_5|NZ_CP025030.1_2076831_2077614_+	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|276aa|down_6|NZ_CP025030.1_2077734_2078562_+	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|424aa|down_7|NZ_CP025030.1_2078643_2079915_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|302aa|down_8|NZ_CP025030.1_2080501_2081407_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|592aa|down_9|NZ_CP025030.1_2081443_2083219_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	7	2671492-2671569	7	CRISPRCasFinder	no		csa3,PD-DExK,DEDDh,WYL,DinG	Orphan	GCCGATCGTGGCTTGGCGGCCGAA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA|270aa|up_3|NZ_CP025030.1_2667267_2668077_+,NA|69aa|up_2|NZ_CP025030.1_2668073_2668280_-,NA	NA|323aa|up_9|NZ_CP025030.1_2657048_2658017_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|232aa|up_8|NZ_CP025030.1_2658049_2658745_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|217aa|up_7|NZ_CP025030.1_2658776_2659427_-	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|1122aa|up_6|NZ_CP025030.1_2659482_2662848_-	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|406aa|up_5|NZ_CP025030.1_2662863_2664081_-	cd01948, EAL, EAL domain	NA|942aa|up_4|NZ_CP025030.1_2664083_2666909_-	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|270aa|up_3|NZ_CP025030.1_2667267_2668077_+	NA	NA|69aa|up_2|NZ_CP025030.1_2668073_2668280_-	NA	NA|429aa|up_1|NZ_CP025030.1_2668578_2669865_-	cd16390, ParB_N_Srx_like, uncharacterized family distantly related to the N-terminal domain of the ParB/Srx superfamily	NA|224aa|up_0|NZ_CP025030.1_2670017_2670689_+	sd00045, ANK, ankyrin repeats	NA|218aa|down_0|NZ_CP025030.1_2672120_2672774_+	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	NA|281aa|down_1|NZ_CP025030.1_2672870_2673713_+	COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]	NA|565aa|down_2|NZ_CP025030.1_2673765_2675460_+	PRK09198, PRK09198, putative nicotinate phosphoribosyltransferase; Provisional	NA|262aa|down_3|NZ_CP025030.1_2675545_2676331_-	COG3346, COG3346, Uncharacterized conserved protein [Function unknown]	NA|139aa|down_4|NZ_CP025030.1_2676330_2676747_-	COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]	NA|214aa|down_5|NZ_CP025030.1_2676743_2677385_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|668aa|down_6|NZ_CP025030.1_2677377_2679381_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I	NA|348aa|down_7|NZ_CP025030.1_2679457_2680501_-	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional	NA|445aa|down_8|NZ_CP025030.1_2680721_2682056_+	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|348aa|down_9|NZ_CP025030.1_2682101_2683145_-	cd10001, HDAC_classII_APAH, Histone deacetylase class IIa
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	8	2803041-2803141	8	CRISPRCasFinder	no		csa3,PD-DExK,DEDDh,WYL,DinG	Orphan	TTTCGCGCTTCACCCATCCTACG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA,NA	NA|732aa|up_9|NZ_CP025030.1_2787781_2789977_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|146aa|up_8|NZ_CP025030.1_2790217_2790655_-	pfam11162, DUF2946, Protein of unknown function (DUF2946)	NA|233aa|up_7|NZ_CP025030.1_2790762_2791461_-	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|280aa|up_6|NZ_CP025030.1_2791463_2792303_-	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD	NA|376aa|up_5|NZ_CP025030.1_2792299_2793427_-	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC	NA|544aa|up_4|NZ_CP025030.1_2793423_2795055_-	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB	NA|418aa|up_3|NZ_CP025030.1_2795066_2796320_-	pfam13433, Peripla_BP_5, Periplasmic binding protein domain	NA|622aa|up_2|NZ_CP025030.1_2796701_2798567_+	PRK08186, PRK08186, allophanate hydrolase; Provisional	NA|1215aa|up_1|NZ_CP025030.1_2798593_2802238_+	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|243aa|up_0|NZ_CP025030.1_2802234_2802963_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|424aa|down_0|NZ_CP025030.1_2803358_2804630_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|272aa|down_1|NZ_CP025030.1_2804691_2805507_-	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|171aa|down_2|NZ_CP025030.1_2805508_2806021_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|123aa|down_3|NZ_CP025030.1_2806047_2806416_-	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown]	NA|159aa|down_4|NZ_CP025030.1_2806514_2806991_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|314aa|down_5|NZ_CP025030.1_2806995_2807937_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|372aa|down_6|NZ_CP025030.1_2807998_2809114_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|323aa|down_7|NZ_CP025030.1_2809216_2810185_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|177aa|down_8|NZ_CP025030.1_2810320_2810851_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|461aa|down_9|NZ_CP025030.1_2811349_2812732_-	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	9	2981817-2981918	9	CRISPRCasFinder	no		csa3,PD-DExK,DEDDh,WYL,DinG	Orphan	CACCCATCCTACGGGCTTGCGGTG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA,NA	NA|357aa|up_9|NZ_CP025030.1_2970072_2971143_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|294aa|up_8|NZ_CP025030.1_2971145_2972027_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|387aa|up_7|NZ_CP025030.1_2972052_2973213_-	cd20014, PBP1_RPA0668_benzoate-like, type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs	NA|540aa|up_6|NZ_CP025030.1_2973294_2974914_-	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)	NA|159aa|up_5|NZ_CP025030.1_2974989_2975466_-	pfam16155, DUF4863, Domain of unknown function (DUF4863)	NA|303aa|up_4|NZ_CP025030.1_2975644_2976553_+	PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed	NA|557aa|up_3|NZ_CP025030.1_2976736_2978407_+	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional	NA|476aa|up_2|NZ_CP025030.1_2978493_2979921_+	TIGR03225, benzo_boxB, benzoyl-CoA oxygenase, B subunit	NA|417aa|up_1|NZ_CP025030.1_2979974_2981225_+	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein	NA|148aa|up_0|NZ_CP025030.1_2981305_2981749_+	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function	NA|398aa|down_0|NZ_CP025030.1_2982101_2983295_-	cd01151, GCD, Glutaryl-CoA dehydrogenase	NA|561aa|down_1|NZ_CP025030.1_2983427_2985110_-	PRK08199, PRK08199, thiamine pyrophosphate protein; Validated	NA|305aa|down_2|NZ_CP025030.1_2985246_2986161_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|328aa|down_3|NZ_CP025030.1_2986226_2987210_+	PRK00283, xerD, tyrosine recombinase	NA|163aa|down_4|NZ_CP025030.1_2987255_2987744_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|237aa|down_5|NZ_CP025030.1_2987766_2988477_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|166aa|down_6|NZ_CP025030.1_2988492_2988990_-	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons	NA|502aa|down_7|NZ_CP025030.1_2989273_2990779_+	cd08515, PBP2_NikA_DppA_OppA_like_10, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|339aa|down_8|NZ_CP025030.1_2990778_2991795_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|299aa|down_9|NZ_CP025030.1_2991794_2992691_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_002812705.1_ASM281270v1	NZ_CP025030	Achromobacter spanius strain DSM 23806 chromosome, complete genome	10	3430687-3430810	10	CRISPRCasFinder	no	PD-DExK	csa3,PD-DExK,DEDDh,WYL,DinG	Unclear	CCGTAGGATGGGTGAAGCGCGGCAAAATCGACGCAAGAACACCCCCA	47	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DEDDh,WYL,DinG	NA|99aa|up_3|NZ_CP025030.1_3426715_3427012_+,NA	NA|235aa|up_9|NZ_CP025030.1_3419477_3420182_-	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane]	NA|153aa|up_8|NZ_CP025030.1_3420178_3420637_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|888aa|up_7|NZ_CP025030.1_3420864_3423528_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|453aa|up_6|NZ_CP025030.1_3423672_3425031_+	PRK06116, PRK06116, glutathione reductase; Validated	NA|274aa|up_5|NZ_CP025030.1_3425034_3425856_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|211aa|up_4|NZ_CP025030.1_3426083_3426716_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|99aa|up_3|NZ_CP025030.1_3426715_3427012_+	NA	NA|501aa|up_2|NZ_CP025030.1_3427093_3428596_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|243aa|up_1|NZ_CP025030.1_3428991_3429720_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|295aa|up_0|NZ_CP025030.1_3429710_3430595_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|323aa|down_0|NZ_CP025030.1_3430828_3431797_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|112aa|down_1|NZ_CP025030.1_3431793_3432129_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|428aa|down_2|NZ_CP025030.1_3432232_3433516_-	PRK12890, PRK12890, allantoate amidohydrolase; Reviewed	NA|265aa|down_3|NZ_CP025030.1_3433632_3434427_-	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional	NA|318aa|down_4|NZ_CP025030.1_3434564_3435518_+	cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR	NA|248aa|down_5|NZ_CP025030.1_3435463_3436207_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|541aa|down_6|NZ_CP025030.1_3436308_3437931_+	cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)	NA|619aa|down_7|NZ_CP025030.1_3438074_3439931_+	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	PD-DExK|147aa|down_8|NZ_CP025030.1_3440132_3440573_+	pfam06250, DUF1016, Protein of unknown function (DUF1016)	NA|210aa|down_9|NZ_CP025030.1_3440569_3441199_+	pfam13649, Methyltransf_25, Methyltransferase domain
