assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	1	56608-56686	1	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|226aa|down_4|NZ_CP025047.1_73531_74209_+	NA|278aa|up_9|NZ_CP025047.1_33735_34569_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP025047.1_34556_35423_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP025047.1_35416_36220_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP025047.1_36251_36983_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP025047.1_37102_37534_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP025047.1_37562_37955_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_CP025047.1_38413_39166_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP025047.1_51657_52842_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP025047.1_53214_55566_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP025047.1_55587_56127_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP025047.1_69217_70057_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP025047.1_70053_71235_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_CP025047.1_71538_72441_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_CP025047.1_72462_73542_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_CP025047.1_73531_74209_+	NA	NA|72aa|down_5|NZ_CP025047.1_74251_74467_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_CP025047.1_74495_75575_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_CP025047.1_75574_76327_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_CP025047.1_76327_76885_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_CP025047.1_77054_78401_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	2	616047-616478	1	CRT	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	ATTAGTATTGATATTCTAGGTAATTGNTAGAG	32	4	4	616079-616096|616279-616296|616329-616346|616429-616446	NZ_CP025047.1_2380735-2380718|NZ_CP025047.1_139105-139088|NZ_CP025047.1_139105-139088|NZ_CP025047.1_139105-139088	NA	8	8	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA|194aa|up_8|NZ_CP025047.1_607465_608047_+,NA|57aa|down_1|NZ_CP025047.1_617190_617361_+,NA|136aa|down_4|NZ_CP025047.1_619609_620017_+,NA|102aa|down_6|NZ_CP025047.1_621392_621698_+	NA|77aa|up_9|NZ_CP025047.1_607242_607473_+	PRK07118, PRK07118, Fe-S cluster domain-containing protein	NA|194aa|up_8|NZ_CP025047.1_607465_608047_+	NA	NA|226aa|up_7|NZ_CP025047.1_608625_609303_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|455aa|up_6|NZ_CP025047.1_609491_610856_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|174aa|up_5|NZ_CP025047.1_610983_611505_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|62aa|up_4|NZ_CP025047.1_611636_611822_+	pfam02956, TT_ORF1, TT viral orf 1	NA|360aa|up_3|NZ_CP025047.1_612039_613119_+	COG4335, COG4335, DNA alkylation repair enzyme [DNA replication, recombination, and repair]	NA|123aa|up_2|NZ_CP025047.1_613442_613811_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|268aa|up_1|NZ_CP025047.1_613927_614731_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|297aa|up_0|NZ_CP025047.1_615122_616013_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|148aa|down_0|NZ_CP025047.1_616575_617019_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|57aa|down_1|NZ_CP025047.1_617190_617361_+	NA	NA|366aa|down_2|NZ_CP025047.1_617733_618831_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|163aa|down_3|NZ_CP025047.1_619035_619524_+	pfam12952, DUF3841, Domain of unknown function (DUF3841)	NA|136aa|down_4|NZ_CP025047.1_619609_620017_+	NA	NA|73aa|down_5|NZ_CP025047.1_620017_620236_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|102aa|down_6|NZ_CP025047.1_621392_621698_+	NA	NA|230aa|down_7|NZ_CP025047.1_622105_622795_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|306aa|down_8|NZ_CP025047.1_622794_623712_+	cd16947, HATPase_YcbM-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis YcbM	NA|309aa|down_9|NZ_CP025047.1_623784_624711_+	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	3	932536-932613	2	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	AAAAAATAAGAAAGTTTATAAATA	24	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|64aa|down_8|NZ_CP025047.1_941802_941994_+,NA|117aa|down_9|NZ_CP025047.1_942216_942567_+	NA|527aa|up_9|NZ_CP025047.1_918502_920083_+	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism]	NA|149aa|up_8|NZ_CP025047.1_920256_920703_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|348aa|up_7|NZ_CP025047.1_920723_921767_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|387aa|up_6|NZ_CP025047.1_922537_923698_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|377aa|up_5|NZ_CP025047.1_923699_924830_+	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit	NA|481aa|up_4|NZ_CP025047.1_924858_926301_+	cd03791, GT5_Glycogen_synthase_DULL1-like, Glycogen synthase GlgA and similar proteins	NA|807aa|up_3|NZ_CP025047.1_926314_928735_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|622aa|up_2|NZ_CP025047.1_928739_930605_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|218aa|up_1|NZ_CP025047.1_930849_931503_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|200aa|up_0|NZ_CP025047.1_931598_932198_+	pfam08668, HDOD, HDOD domain	NA|492aa|down_0|NZ_CP025047.1_932787_934263_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|138aa|down_1|NZ_CP025047.1_934349_934763_+	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form	NA|284aa|down_2|NZ_CP025047.1_934792_935644_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|293aa|down_3|NZ_CP025047.1_935633_936512_+	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|67aa|down_4|NZ_CP025047.1_936691_936892_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|497aa|down_5|NZ_CP025047.1_937358_938849_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|499aa|down_6|NZ_CP025047.1_939128_940625_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|309aa|down_7|NZ_CP025047.1_940758_941685_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|64aa|down_8|NZ_CP025047.1_941802_941994_+	NA	NA|117aa|down_9|NZ_CP025047.1_942216_942567_+	NA
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	4	1048384-1048491	3	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	ATATATAATAAAATAAGTAAACTAAG	26	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|181aa|down_4|NZ_CP025047.1_1051785_1052328_+	NA|740aa|up_9|NZ_CP025047.1_1027950_1030170_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|277aa|up_8|NZ_CP025047.1_1030278_1031109_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|1156aa|up_7|NZ_CP025047.1_1031098_1034566_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1276aa|up_6|NZ_CP025047.1_1034565_1038393_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|404aa|up_5|NZ_CP025047.1_1038438_1039650_+	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD	NA|1176aa|up_4|NZ_CP025047.1_1039636_1043164_+	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC	NA|418aa|up_3|NZ_CP025047.1_1043294_1044548_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|351aa|up_2|NZ_CP025047.1_1044696_1045749_+	TIGR02872, UPF0118_membrane_protein_YtvI, sporulation integral membrane protein YtvI	NA|409aa|up_1|NZ_CP025047.1_1045838_1047065_+	PRK05469, PRK05469, tripeptide aminopeptidase PepT	NA|351aa|up_0|NZ_CP025047.1_1047271_1048324_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|190aa|down_0|NZ_CP025047.1_1048658_1049228_-	PRK09453, PRK09453, phosphodiesterase; Provisional	NA|267aa|down_1|NZ_CP025047.1_1049252_1050053_-	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|287aa|down_2|NZ_CP025047.1_1050187_1051048_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|229aa|down_3|NZ_CP025047.1_1051047_1051734_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|181aa|down_4|NZ_CP025047.1_1051785_1052328_+	NA	NA|156aa|down_5|NZ_CP025047.1_1052406_1052874_+	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|379aa|down_6|NZ_CP025047.1_1053582_1054719_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|261aa|down_7|NZ_CP025047.1_1054777_1055560_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|337aa|down_8|NZ_CP025047.1_1055578_1056589_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|266aa|down_9|NZ_CP025047.1_1056607_1057405_+	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	5	1210173-1210465	1,4,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,4,4	4	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|52aa|down_1|NZ_CP025047.1_1211686_1211842_+,NA|84aa|down_2|NZ_CP025047.1_1212087_1212339_+,NA|128aa|down_3|NZ_CP025047.1_1213548_1213932_-,NA|115aa|down_4|NZ_CP025047.1_1214058_1214403_+,NA|72aa|down_5|NZ_CP025047.1_1214585_1214801_+,NA|106aa|down_6|NZ_CP025047.1_1215785_1216103_-,NA|65aa|down_9|NZ_CP025047.1_1218481_1218676_-	NA|271aa|up_9|NZ_CP025047.1_1197276_1198089_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|442aa|up_8|NZ_CP025047.1_1198292_1199618_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|NZ_CP025047.1_1199830_1200910_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|NZ_CP025047.1_1201081_1201756_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|NZ_CP025047.1_1201742_1202990_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|557aa|up_4|NZ_CP025047.1_1203061_1204732_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_3|NZ_CP025047.1_1204828_1205113_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_2|NZ_CP025047.1_1205135_1206653_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_1|NZ_CP025047.1_1206777_1207599_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_0|NZ_CP025047.1_1207789_1209217_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|75aa|down_0|NZ_CP025047.1_1210751_1210976_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|52aa|down_1|NZ_CP025047.1_1211686_1211842_+	NA	NA|84aa|down_2|NZ_CP025047.1_1212087_1212339_+	NA	NA|128aa|down_3|NZ_CP025047.1_1213548_1213932_-	NA	NA|115aa|down_4|NZ_CP025047.1_1214058_1214403_+	NA	NA|72aa|down_5|NZ_CP025047.1_1214585_1214801_+	NA	NA|106aa|down_6|NZ_CP025047.1_1215785_1216103_-	NA	NA|130aa|down_7|NZ_CP025047.1_1217161_1217551_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_8|NZ_CP025047.1_1217870_1218380_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_9|NZ_CP025047.1_1218481_1218676_-	NA
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	6	1418608-1419094	2,5,3	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,7,7	7	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA|49aa|up_2|NZ_CP025047.1_1416204_1416351_+,NA|82aa|up_1|NZ_CP025047.1_1417103_1417349_-,NA|35aa|up_0|NZ_CP025047.1_1417973_1418078_+,NA|80aa|down_4|NZ_CP025047.1_1426240_1426480_+,NA|59aa|down_5|NZ_CP025047.1_1426650_1426827_-	NA|477aa|up_9|NZ_CP025047.1_1407565_1408996_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_8|NZ_CP025047.1_1409313_1410258_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_7|NZ_CP025047.1_1410528_1411464_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|198aa|up_6|NZ_CP025047.1_1411582_1412176_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_5|NZ_CP025047.1_1412282_1412711_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_4|NZ_CP025047.1_1412777_1413446_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_3|NZ_CP025047.1_1413563_1414919_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|49aa|up_2|NZ_CP025047.1_1416204_1416351_+	NA	NA|82aa|up_1|NZ_CP025047.1_1417103_1417349_-	NA	NA|35aa|up_0|NZ_CP025047.1_1417973_1418078_+	NA	NA|578aa|down_0|NZ_CP025047.1_1419419_1421153_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|NZ_CP025047.1_1421392_1422238_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NZ_CP025047.1_1422268_1424503_-	cd01948, EAL, EAL domain	NA|280aa|down_3|NZ_CP025047.1_1425286_1426126_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NZ_CP025047.1_1426240_1426480_+	NA	NA|59aa|down_5|NZ_CP025047.1_1426650_1426827_-	NA	NA|225aa|down_6|NZ_CP025047.1_1427331_1428006_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|NZ_CP025047.1_1428225_1428780_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|NZ_CP025047.1_1428857_1429223_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|262aa|down_9|NZ_CP025047.1_1429687_1430473_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	7	1529323-1529549	3,6,4	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Unclear	AACGTTTTATATTAACTATATGGAATGTAAATATATGTTTT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	41,29,29	0	0	NA	NA	I-A:I-A:I-A	2,3,3	3	TypeV	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA|50aa|up_9|NZ_CP025047.1_1518154_1518304_+,NA|190aa|up_7|NZ_CP025047.1_1519218_1519788_+,NA|61aa|up_4|NZ_CP025047.1_1522732_1522915_-,NA|95aa|down_0|NZ_CP025047.1_1529716_1530001_-,NA|330aa|down_5|NZ_CP025047.1_1534450_1535440_+	NA|50aa|up_9|NZ_CP025047.1_1518154_1518304_+	NA	NA|300aa|up_8|NZ_CP025047.1_1518314_1519214_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NZ_CP025047.1_1519218_1519788_+	NA	NA|216aa|up_6|NZ_CP025047.1_1519954_1520602_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NZ_CP025047.1_1520991_1521906_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NZ_CP025047.1_1522732_1522915_-	NA	NA|283aa|up_3|NZ_CP025047.1_1523325_1524174_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NZ_CP025047.1_1524192_1525020_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NZ_CP025047.1_1524994_1525918_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NZ_CP025047.1_1526570_1528664_+	cd01948, EAL, EAL domain	NA|95aa|down_0|NZ_CP025047.1_1529716_1530001_-	NA	NA|273aa|down_1|NZ_CP025047.1_1530207_1531026_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|NZ_CP025047.1_1531158_1533279_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|NZ_CP025047.1_1533304_1533532_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|NZ_CP025047.1_1533858_1534299_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|330aa|down_5|NZ_CP025047.1_1534450_1535440_+	NA	NA|403aa|down_6|NZ_CP025047.1_1535916_1537125_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|NZ_CP025047.1_1537185_1538067_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|315aa|down_8|NZ_CP025047.1_1538452_1539397_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|NZ_CP025047.1_1539619_1540165_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	8	1704917-1705277	7,4	CRISPRCasFinder,PILER-CR	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAT,ACATGTTTTATATTAACTATGAGGTATGTAAATCTTA	29,37	0	0	NA	NA	I-A:I-A	5,2	5	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|59aa|down_4|NZ_CP025047.1_1712363_1712540_-,NA|341aa|down_5|NZ_CP025047.1_1713114_1714137_+,NA|258aa|down_7|NZ_CP025047.1_1715043_1715817_+	NA|200aa|up_9|NZ_CP025047.1_1688445_1689045_-	COG4110, COG4110, Uncharacterized protein involved in stress response [General function prediction only]	NA|266aa|up_8|NZ_CP025047.1_1689147_1689945_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_7|NZ_CP025047.1_1690254_1691241_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_6|NZ_CP025047.1_1691724_1693455_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_5|NZ_CP025047.1_1693979_1694495_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_4|NZ_CP025047.1_1695300_1697775_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_3|NZ_CP025047.1_1697774_1699232_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_2|NZ_CP025047.1_1699654_1702012_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_1|NZ_CP025047.1_1702097_1702415_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|424aa|up_0|NZ_CP025047.1_1702998_1704270_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|184aa|down_0|NZ_CP025047.1_1706511_1707063_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_1|NZ_CP025047.1_1707253_1708216_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_2|NZ_CP025047.1_1708510_1710355_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_3|NZ_CP025047.1_1710676_1711261_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_4|NZ_CP025047.1_1712363_1712540_-	NA	NA|341aa|down_5|NZ_CP025047.1_1713114_1714137_+	NA	NA|296aa|down_6|NZ_CP025047.1_1714150_1715038_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_7|NZ_CP025047.1_1715043_1715817_+	NA	NA|242aa|down_8|NZ_CP025047.1_1715928_1716654_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|468aa|down_9|NZ_CP025047.1_1716657_1718061_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	9	2217527-2220528	8,5,5	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Type I-B	ATTTAAATACATCTCATGTTACTGTTTAAC,ATTTAAATACATCTCATGTTACTGTTTAAC,ATTTAAATACATCTCATGTTACTGTTTAAC	30,30,30	0	0	NA	NA	III-B:III-B:III-B	45,45,44	45	TypeI-B	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA|75aa|up_9|NZ_CP025047.1_2207744_2207969_-,NA|275aa|up_7|NZ_CP025047.1_2209763_2210588_-,NA|69aa|down_5|NZ_CP025047.1_2228013_2228220_+,NA|194aa|down_6|NZ_CP025047.1_2228655_2229237_+	NA|75aa|up_9|NZ_CP025047.1_2207744_2207969_-	NA	NA|375aa|up_8|NZ_CP025047.1_2208165_2209290_+	pfam12725, DUF3810, Protein of unknown function (DUF3810)	NA|275aa|up_7|NZ_CP025047.1_2209763_2210588_-	NA	NA|352aa|up_6|NZ_CP025047.1_2210935_2211991_-	pfam04551, GcpE, GcpE protein	NA|335aa|up_5|NZ_CP025047.1_2212173_2213178_-	pfam02163, Peptidase_M50, Peptidase family M50	NA|385aa|up_4|NZ_CP025047.1_2213190_2214345_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|68aa|up_3|NZ_CP025047.1_2214508_2214712_-	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	cas2|97aa|up_2|NZ_CP025047.1_2215413_2215704_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|333aa|up_1|NZ_CP025047.1_2215914_2216913_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|165aa|up_0|NZ_CP025047.1_2216947_2217442_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|853aa|down_0|NZ_CP025047.1_2220717_2223276_-	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3	cas5|247aa|down_1|NZ_CP025047.1_2223299_2224040_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7b|330aa|down_2|NZ_CP025047.1_2224041_2225031_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8b1|587aa|down_3|NZ_CP025047.1_2225023_2226784_-	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI	cas6|232aa|down_4|NZ_CP025047.1_2226774_2227470_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|69aa|down_5|NZ_CP025047.1_2228013_2228220_+	NA	NA|194aa|down_6|NZ_CP025047.1_2228655_2229237_+	NA	NA|604aa|down_7|NZ_CP025047.1_2229324_2231136_-	cd01948, EAL, EAL domain	NA|260aa|down_8|NZ_CP025047.1_2231959_2232739_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|245aa|down_9|NZ_CP025047.1_2232751_2233486_-	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	10	2416908-2417723	9,6,6	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	12,12,11	12	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA|138aa|up_5|NZ_CP025047.1_2413162_2413576_+,NA|99aa|up_4|NZ_CP025047.1_2413594_2413891_+,NA|106aa|up_3|NZ_CP025047.1_2414173_2414491_+,NA|155aa|up_2|NZ_CP025047.1_2414626_2415091_+,NA|54aa|up_1|NZ_CP025047.1_2415418_2415580_-,NA|51aa|up_0|NZ_CP025047.1_2416564_2416717_-,NA|51aa|down_1|NZ_CP025047.1_2419106_2419259_-,NA|108aa|down_2|NZ_CP025047.1_2419532_2419856_-,NA|85aa|down_3|NZ_CP025047.1_2419891_2420146_-,NA|57aa|down_6|NZ_CP025047.1_2423919_2424090_+	NA|687aa|up_9|NZ_CP025047.1_2408792_2410853_-	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS	NA|231aa|up_8|NZ_CP025047.1_2411048_2411741_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|125aa|up_7|NZ_CP025047.1_2412352_2412727_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_6|NZ_CP025047.1_2412945_2413179_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_5|NZ_CP025047.1_2413162_2413576_+	NA	NA|99aa|up_4|NZ_CP025047.1_2413594_2413891_+	NA	NA|106aa|up_3|NZ_CP025047.1_2414173_2414491_+	NA	NA|155aa|up_2|NZ_CP025047.1_2414626_2415091_+	NA	NA|54aa|up_1|NZ_CP025047.1_2415418_2415580_-	NA	NA|51aa|up_0|NZ_CP025047.1_2416564_2416717_-	NA	NA|308aa|down_0|NZ_CP025047.1_2417989_2418913_-	pfam09851, SHOCT, Short C-terminal domain	NA|51aa|down_1|NZ_CP025047.1_2419106_2419259_-	NA	NA|108aa|down_2|NZ_CP025047.1_2419532_2419856_-	NA	NA|85aa|down_3|NZ_CP025047.1_2419891_2420146_-	NA	NA|125aa|down_4|NZ_CP025047.1_2421864_2422239_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|163aa|down_5|NZ_CP025047.1_2423042_2423531_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|57aa|down_6|NZ_CP025047.1_2423919_2424090_+	NA	NA|63aa|down_7|NZ_CP025047.1_2424566_2424755_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|117aa|down_8|NZ_CP025047.1_2424916_2425267_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|down_9|NZ_CP025047.1_2425268_2425469_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	11	2579411-2579568	7	PILER-CR	no	cas3,cas5,cas7,cas6	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Unclear	AGGTTTAAGATTAACTAAGTGG------------ATTTCA	40	0	0	NA	NA	NA	2	2	Unclear	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|492aa|down_3|NZ_CP025047.1_2583990_2585466_-	NA|448aa|up_9|NZ_CP025047.1_2571867_2573211_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|NZ_CP025047.1_2573223_2573460_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NZ_CP025047.1_2573672_2574236_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NZ_CP025047.1_2574428_2574926_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NZ_CP025047.1_2575036_2575480_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NZ_CP025047.1_2575509_2575689_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NZ_CP025047.1_2575851_2576202_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NZ_CP025047.1_2576244_2577543_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NZ_CP025047.1_2577544_2578303_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NZ_CP025047.1_2578321_2579269_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NZ_CP025047.1_2579709_2582118_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|NZ_CP025047.1_2582144_2582942_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|NZ_CP025047.1_2582957_2583971_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|NZ_CP025047.1_2583990_2585466_-	NA	cas6|246aa|down_4|NZ_CP025047.1_2585470_2586208_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|NZ_CP025047.1_2586465_2587575_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|NZ_CP025047.1_2587604_2588372_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_7|NZ_CP025047.1_2588559_2589933_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|NZ_CP025047.1_2589968_2590904_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|385aa|down_9|NZ_CP025047.1_2591869_2593024_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	12	2660822-2661380	8,7,10	PILER-CR,CRT,CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	GTTTTATATTAACTATATGGAATGTAAATT,AATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC	30,30,29	0	0	NA	NA	I-A:I-A:I-A	8,8,8	8	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|53aa|down_0|NZ_CP025047.1_2661665_2661824_-	NA|240aa|up_9|NZ_CP025047.1_2648393_2649113_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|253aa|up_8|NZ_CP025047.1_2649159_2649918_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_7|NZ_CP025047.1_2650048_2651401_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_6|NZ_CP025047.1_2651497_2653048_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_5|NZ_CP025047.1_2653098_2653914_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_4|NZ_CP025047.1_2653934_2654417_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_3|NZ_CP025047.1_2654700_2655081_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_2|NZ_CP025047.1_2655175_2656393_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_1|NZ_CP025047.1_2657051_2658680_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_0|NZ_CP025047.1_2658800_2659796_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|53aa|down_0|NZ_CP025047.1_2661665_2661824_-	NA	NA|457aa|down_1|NZ_CP025047.1_2662117_2663488_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|223aa|down_2|NZ_CP025047.1_2665303_2665972_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_3|NZ_CP025047.1_2666824_2669245_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_4|NZ_CP025047.1_2669598_2669949_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_5|NZ_CP025047.1_2670065_2670638_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_6|NZ_CP025047.1_2670638_2671328_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_7|NZ_CP025047.1_2671603_2672242_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_8|NZ_CP025047.1_2672394_2674398_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme	NA|214aa|down_9|NZ_CP025047.1_2674571_2675213_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	13	2896059-2896384	11	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|107aa|down_2|NZ_CP025047.1_2899247_2899568_-,NA|664aa|down_3|NZ_CP025047.1_2899557_2901549_-,NA|458aa|down_7|NZ_CP025047.1_2912335_2913709_-	NA|218aa|up_9|NZ_CP025047.1_2881060_2881714_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NZ_CP025047.1_2882216_2883560_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NZ_CP025047.1_2883738_2885103_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|622aa|up_6|NZ_CP025047.1_2885280_2887146_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NZ_CP025047.1_2887381_2888599_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|288aa|up_4|NZ_CP025047.1_2888798_2889662_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NZ_CP025047.1_2889743_2891666_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NZ_CP025047.1_2891729_2892578_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NZ_CP025047.1_2892990_2893872_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|288aa|up_0|NZ_CP025047.1_2894079_2894943_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NZ_CP025047.1_2897143_2898157_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|290aa|down_1|NZ_CP025047.1_2898180_2899050_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_CP025047.1_2899247_2899568_-	NA	NA|664aa|down_3|NZ_CP025047.1_2899557_2901549_-	NA	NA|848aa|down_4|NZ_CP025047.1_2901671_2904215_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NZ_CP025047.1_2904958_2905636_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NZ_CP025047.1_2911025_2911964_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NZ_CP025047.1_2912335_2913709_-	NA	NA|441aa|down_8|NZ_CP025047.1_2913895_2915218_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NZ_CP025047.1_2915210_2915915_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	14	2950963-2951138	12	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	2	2	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|222aa|down_0|NZ_CP025047.1_2952431_2953097_+	NA|519aa|up_9|NZ_CP025047.1_2937354_2938911_-	PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional	NA|205aa|up_8|NZ_CP025047.1_2939001_2939616_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_7|NZ_CP025047.1_2939630_2940080_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_6|NZ_CP025047.1_2940104_2942312_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_5|NZ_CP025047.1_2942385_2942898_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_4|NZ_CP025047.1_2942910_2945361_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_3|NZ_CP025047.1_2945373_2947038_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_2|NZ_CP025047.1_2947335_2947833_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_1|NZ_CP025047.1_2947861_2949241_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_0|NZ_CP025047.1_2949536_2949683_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|222aa|down_0|NZ_CP025047.1_2952431_2953097_+	NA	NA|571aa|down_1|NZ_CP025047.1_2953888_2955601_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_2|NZ_CP025047.1_2955954_2956215_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_3|NZ_CP025047.1_2956407_2957619_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_4|NZ_CP025047.1_2957850_2959584_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_5|NZ_CP025047.1_2959623_2960022_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_6|NZ_CP025047.1_2960024_2961572_-	cd01948, EAL, EAL domain	NA|302aa|down_7|NZ_CP025047.1_2961886_2962792_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|215aa|down_8|NZ_CP025047.1_2962834_2963479_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|157aa|down_9|NZ_CP025047.1_2963617_2964088_+	pfam14270, DUF4358, Domain of unknown function (DUF4358)
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	15	2951245-2951534	13	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|222aa|down_0|NZ_CP025047.1_2952431_2953097_+	NA|519aa|up_9|NZ_CP025047.1_2937354_2938911_-	PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional	NA|205aa|up_8|NZ_CP025047.1_2939001_2939616_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_7|NZ_CP025047.1_2939630_2940080_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_6|NZ_CP025047.1_2940104_2942312_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_5|NZ_CP025047.1_2942385_2942898_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_4|NZ_CP025047.1_2942910_2945361_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_3|NZ_CP025047.1_2945373_2947038_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_2|NZ_CP025047.1_2947335_2947833_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_1|NZ_CP025047.1_2947861_2949241_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_0|NZ_CP025047.1_2949536_2949683_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|222aa|down_0|NZ_CP025047.1_2952431_2953097_+	NA	NA|571aa|down_1|NZ_CP025047.1_2953888_2955601_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_2|NZ_CP025047.1_2955954_2956215_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_3|NZ_CP025047.1_2956407_2957619_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_4|NZ_CP025047.1_2957850_2959584_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_5|NZ_CP025047.1_2959623_2960022_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_6|NZ_CP025047.1_2960024_2961572_-	cd01948, EAL, EAL domain	NA|302aa|down_7|NZ_CP025047.1_2961886_2962792_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|215aa|down_8|NZ_CP025047.1_2962834_2963479_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|157aa|down_9|NZ_CP025047.1_2963617_2964088_+	pfam14270, DUF4358, Domain of unknown function (DUF4358)
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	16	2951737-2951827	14	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|222aa|down_0|NZ_CP025047.1_2952431_2953097_+	NA|519aa|up_9|NZ_CP025047.1_2937354_2938911_-	PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional	NA|205aa|up_8|NZ_CP025047.1_2939001_2939616_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_7|NZ_CP025047.1_2939630_2940080_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_6|NZ_CP025047.1_2940104_2942312_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_5|NZ_CP025047.1_2942385_2942898_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_4|NZ_CP025047.1_2942910_2945361_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_3|NZ_CP025047.1_2945373_2947038_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_2|NZ_CP025047.1_2947335_2947833_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_1|NZ_CP025047.1_2947861_2949241_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_0|NZ_CP025047.1_2949536_2949683_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|222aa|down_0|NZ_CP025047.1_2952431_2953097_+	NA	NA|571aa|down_1|NZ_CP025047.1_2953888_2955601_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_2|NZ_CP025047.1_2955954_2956215_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_3|NZ_CP025047.1_2956407_2957619_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_4|NZ_CP025047.1_2957850_2959584_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_5|NZ_CP025047.1_2959623_2960022_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_6|NZ_CP025047.1_2960024_2961572_-	cd01948, EAL, EAL domain	NA|302aa|down_7|NZ_CP025047.1_2961886_2962792_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|215aa|down_8|NZ_CP025047.1_2962834_2963479_-	cd00475, Cis_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases	NA|157aa|down_9|NZ_CP025047.1_2963617_2964088_+	pfam14270, DUF4358, Domain of unknown function (DUF4358)
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	17	3522265-3523435	8	CRT	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	GCTCCNGTNNNTCCTGTTG	19	2	3	3522851-3522876|3522851-3522876|3523184-3523209	NZ_CP025047.1_3639872-3639897|NZ_CP025047.1_3640913-3640938|NZ_CP025047.1_3640781-3640806	NA	19	19	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA,NA|46aa|down_3|NZ_CP025047.1_3528253_3528391_-	NA|82aa|up_9|NZ_CP025047.1_3510402_3510648_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|NZ_CP025047.1_3510778_3511897_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|NZ_CP025047.1_3512102_3513296_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|NZ_CP025047.1_3513618_3514500_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|NZ_CP025047.1_3514924_3515926_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|NZ_CP025047.1_3516042_3516930_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|NZ_CP025047.1_3516996_3517746_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|NZ_CP025047.1_3517969_3518686_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|NZ_CP025047.1_3519137_3520127_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|NZ_CP025047.1_3520566_3521322_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|180aa|down_0|NZ_CP025047.1_3523882_3524422_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|down_1|NZ_CP025047.1_3524749_3526057_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|592aa|down_2|NZ_CP025047.1_3526481_3528257_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|46aa|down_3|NZ_CP025047.1_3528253_3528391_-	NA	NA|190aa|down_4|NZ_CP025047.1_3528468_3529038_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|212aa|down_5|NZ_CP025047.1_3529221_3529857_-	PRK05813, PRK05813, single-stranded DNA-binding protein; Provisional	NA|294aa|down_6|NZ_CP025047.1_3530524_3531406_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|336aa|down_7|NZ_CP025047.1_3531525_3532533_-	PRK13969, PRK13969, proline racemase; Provisional	NA|161aa|down_8|NZ_CP025047.1_3532552_3533035_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein	NA|156aa|down_9|NZ_CP025047.1_3533052_3533520_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein
GCF_002812645.1_ASM281264v1	NZ_CP025047	Clostridioides difficile strain W0003a chromosome, complete genome	18	4003232-4003316	15	CRISPRCasFinder	no		cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	Orphan	TGTGTGTTAGCACTTTAAGCAAC	23	1	8	4003255-4003293|4003255-4003293|4003255-4003293|4003255-4003293|4003255-4003293|4003255-4003293|4003255-4003293|4003255-4003293	NZ_CP025047.1_48032-48070|NZ_CP025047.1_64055-64093|NZ_CP025047.1_300128-300166|NZ_CP025047.1_1017638-1017676|NZ_CP025047.1_2909072-2909034|NZ_CP025047.1_3845505-3845467|NZ_CP025047.1_3997802-3997840|NZ_CP025047.1_4017486-4017524	NA	1	1	Orphan	cas14k,csa3,WYL,cas3,DEDDh,DinG,cas14j,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,cas7	NA|87aa|up_3|NZ_CP025047.1_3994269_3994530_+,NA|74aa|down_7|NZ_CP025047.1_4013908_4014130_+,NA|138aa|down_9|NZ_CP025047.1_4024763_4025177_+	NA|369aa|up_9|NZ_CP025047.1_3986974_3988081_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|69aa|up_8|NZ_CP025047.1_3988217_3988424_+	pfam13275, S4_2, S4 domain	NA|372aa|up_7|NZ_CP025047.1_3988441_3989557_+	PRK00064, recF, recombination protein F; Reviewed	NA|634aa|up_6|NZ_CP025047.1_3989557_3991459_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|809aa|up_5|NZ_CP025047.1_3991478_3993905_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|99aa|up_4|NZ_CP025047.1_3993973_3994270_+	pfam12732, YtxH, YtxH-like protein	NA|87aa|up_3|NZ_CP025047.1_3994269_3994530_+	NA	NA|106aa|up_2|NZ_CP025047.1_3994541_3994859_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|129aa|up_1|NZ_CP025047.1_3994883_3995270_+	PRK04069, PRK04069, serine-protein kinase RsbW; Provisional	NA|258aa|up_0|NZ_CP025047.1_3995269_3996043_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|170aa|down_0|NZ_CP025047.1_4006730_4007240_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|down_1|NZ_CP025047.1_4007251_4008133_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|down_2|NZ_CP025047.1_4008591_4009863_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|down_3|NZ_CP025047.1_4010183_4010639_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|down_4|NZ_CP025047.1_4011109_4012747_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|down_5|NZ_CP025047.1_4012805_4013156_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|down_6|NZ_CP025047.1_4013168_4013768_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|down_7|NZ_CP025047.1_4013908_4014130_+	NA	NA|402aa|down_8|NZ_CP025047.1_4014200_4015406_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_9|NZ_CP025047.1_4024763_4025177_+	NA
