The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	0	17405	4188456		Bacillus_virus(16.67%)	14	NA	NA
WP_003421192.1|461_611_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003429494.1|636_858_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003421190.1|877_1420_+	transcription termination/antitermination factor NusG	NA	G3MAW2	Bacillus_virus	30.9	1.6e-10
WP_003421189.1|1458_1884_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003421188.1|1954_2653_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003421187.1|2875_3382_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003421186.1|3439_3805_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_003436172.1|4196_4985_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	37.2	1.3e-05
WP_021364114.1|5455_9172_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.8	3.9e-47
WP_003429485.1|9213_12699_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	28.0	2.0e-74
WP_003436176.1|12987_13410_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_003421180.1|13533_14004_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_003436178.1|14052_16119_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	27.0	1.3e-60
WP_009887863.1|16211_17405_+	elongation factor Tu	NA	A0A1V0SC62	Catovirus	28.8	9.6e-08
>prophage 2
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	33736	39167	4188456	tRNA	Planktothrix_phage(33.33%)	7	NA	NA
WP_003435660.1|33736_34570_+	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.0	4.6e-17
WP_003435657.1|34557_35424_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	29.4	5.3e-16
WP_003427737.1|35417_36221_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_003435654.1|36252_36984_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_003421107.1|37103_37535_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_003421105.1|37563_37956_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_003435644.1|38414_39167_+	N-acetylmuramoyl-L-alanine amidase CwlD	NA	A0A067ZJB6	Vibrio_phage	30.5	4.9e-10
>prophage 3
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	53382	56295	4188456		Clostridium_phage(100.0%)	2	NA	NA
WP_003436320.1|53382_55734_+	anaerobic ribonucleoside triphosphate reductase	NA	A0A0A8WEK0	Clostridium_phage	44.5	4.9e-173
WP_021362109.1|55755_56295_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0A8WJI9	Clostridium_phage	46.6	1.6e-31
>prophage 4
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	77260	80706	4188456		Bacillus_phage(50.0%)	2	NA	NA
WP_011860638.1|77260_78607_+	phosphoglucosamine mutase	NA	A0A127AWJ1	Bacillus_phage	26.1	8.3e-24
WP_003432446.1|78873_80706_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	41.8	1.1e-116
>prophage 5
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	85006	94959	4188456	protease	Clostridium_phage(40.0%)	9	NA	NA
WP_021364120.1|85006_86071_+	stage II sporulation protein D	NA	Q2XU88	Pseudomonas_phage	36.0	4.1e-34
WP_003425452.1|86136_86805_+	M23 family metallopeptidase	NA	NA	NA	NA	NA
WP_003420727.1|86902_87163_+	sporulation transcriptional regulator SpoIIID	NA	M9Q261	Clostridium_phage	58.7	2.1e-16
WP_003425449.1|87359_88379_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_003425446.1|88394_88823_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_009887970.1|88933_89443_-|protease	spore protease YyaC	protease	A0A0A8WIQ6	Clostridium_phage	40.4	3.8e-30
WP_003425445.1|89870_91064_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	68.3	4.1e-152
WP_021364119.1|91378_92476_+	membrane protein	NA	NA	NA	NA	NA
WP_021364117.1|92739_94959_+	ATP-dependent RecD-like DNA helicase	NA	A0A0H3UZA5	Geobacillus_virus	32.5	6.7e-71
>prophage 6
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	104757	108554	4188456		Emiliania_huxleyi_virus(50.0%)	2	NA	NA
WP_009895216.1|104757_107433_+	preprotein translocase subunit SecA	NA	V5LQX0	Emiliania_huxleyi_virus	61.4	7.7e-05
WP_177456266.1|107447_108554_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	53.4	2.1e-09
>prophage 7
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	116207	117224	4188456	tRNA	Moraxella_phage(100.0%)	1	NA	NA
WP_021358751.1|116207_117224_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	43.8	4.0e-71
>prophage 8
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	126552	129311	4188456		Clostridioides_phage(50.0%)	2	NA	NA
WP_011860653.1|126552_127266_+	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	35.5	5.9e-29
WP_009888006.1|127538_129311_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.9	1.6e-14
>prophage 9
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	140924	142838	4188456		Tupanvirus(100.0%)	1	NA	NA
WP_003434478.1|140924_142838_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	32.4	2.6e-63
>prophage 10
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	149858	151046	4188456		Orpheovirus(100.0%)	1	NA	NA
WP_003434490.1|149858_151046_-	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	33.8	5.5e-48
>prophage 11
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	156629	161164	4188456		Clostridium_phage(33.33%)	5	NA	NA
WP_003434503.1|156629_157652_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	55.8	4.3e-33
WP_003434504.1|157948_158869_+	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	42.5	7.1e-59
WP_016729224.1|158907_159600_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
WP_003434510.1|159592_160495_+	dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003420885.1|160579_161164_+	orotate phosphoribosyltransferase	NA	Q58MW1	Prochlorococcus_phage	28.1	2.2e-05
>prophage 12
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	167335	223500	4188456	plate,holin,terminase,portal,integrase,tail	Clostridium_phage(94.67%)	78	172122:172138	205706:205722
WP_003420907.1|167335_167620_+	co-chaperone GroES	NA	A0A221S4A8	uncultured_virus	42.6	1.4e-13
WP_016729227.1|167652_169281_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	55.8	3.4e-157
WP_003435015.1|169542_170283_+	nickel pincer cofactor biosynthesis protein LarB	NA	A0A288TYA6	Enterococcus_phage	44.8	4.0e-20
WP_003435017.1|170366_171101_+	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA	NA
WP_016729228.1|171130_171550_+	DUF111 family protein	NA	NA	NA	NA	NA
WP_003425341.1|171931_173467_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.7	1.2e-23
172122:172138	attL	CTCCAACAATATCAAAA	NA	NA	NA	NA
WP_016056348.1|173543_174590_-|integrase	site-specific integrase	integrase	A0A0A8WF08	Clostridium_phage	100.0	1.7e-197
WP_016056349.1|174666_174882_-	helix-turn-helix domain-containing protein	NA	J9QEC2	Clostridium_phage	100.0	2.3e-29
WP_016056351.1|175315_175717_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WFJ2	Clostridium_phage	100.0	4.0e-67
WP_074046669.1|175881_176094_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_016056353.1|176388_176607_-	helix-turn-helix transcriptional regulator	NA	J9QD19	Clostridium_phage	100.0	1.7e-32
WP_032508200.1|176725_176914_+	helix-turn-helix transcriptional regulator	NA	J9QEC3	Clostridium_phage	98.4	2.1e-26
WP_016056355.1|176955_177750_+	phage regulatory protein	NA	J9QE77	Clostridium_phage	100.0	6.4e-141
WP_016056356.1|177833_178214_+	hypothetical protein	NA	J9QE25	Clostridium_phage	100.0	4.9e-67
WP_016056357.1|178203_178353_-	hypothetical protein	NA	J9QDX8	Clostridium_phage	100.0	3.4e-16
WP_016056358.1|178414_178612_+	helix-turn-helix transcriptional regulator	NA	J9QD20	Clostridium_phage	100.0	5.6e-30
WP_016056359.1|178650_178857_+	hypothetical protein	NA	J9QEC4	Clostridium_phage	100.0	3.6e-32
WP_016056361.1|179269_179587_+	hypothetical protein	NA	J9QE26	Clostridium_phage	100.0	8.9e-46
WP_016056362.1|179669_180179_+	siphovirus Gp157 family protein	NA	J9QDX9	Clostridium_phage	100.0	6.0e-84
WP_016056363.1|180188_180797_+	ERF family protein	NA	J9QD21	Clostridium_phage	100.0	3.0e-106
WP_180339858.1|180797_181688_+	DnaD domain protein	NA	A0A090DCV4	Clostridium_phage	98.3	2.4e-165
WP_015984887.1|181748_181922_+	hypothetical protein	NA	A0A0A8WFM7	Clostridium_phage	100.0	5.8e-23
WP_021372201.1|181937_182345_+	single-stranded DNA-binding protein	NA	A0A0A8WIK6	Clostridium_phage	98.5	6.5e-73
WP_032512589.1|182664_182916_+	hypothetical protein	NA	A0A0A8WJU8	Clostridium_phage	81.2	2.7e-29
WP_021372195.1|182929_183295_+	NUMOD1 domain protein	NA	A0A0A8WFH4	Clostridium_phage	90.1	2.2e-56
WP_021372197.1|183412_183862_+	yopX family protein	NA	A0A0A8WF29	Clostridium_phage	95.3	2.1e-80
WP_021360988.1|183964_184141_+	hypothetical protein	NA	A0A0A8WJ18	Clostridium_phage	100.0	5.9e-23
WP_021391734.1|184250_185324_+	DNA cytosine methyltransferase	NA	A0A0A8WFL3	Clostridium_phage	99.7	8.7e-210
WP_015984893.1|185403_185613_+	hypothetical protein	NA	A0A0A8WJB6	Clostridium_phage	100.0	3.5e-30
WP_015984894.1|185624_186629_+	nucleoid-associated protein	NA	A0A0A8WG36	Clostridium_phage	100.0	5.7e-187
WP_015994378.1|186710_187040_+	hypothetical protein	NA	A0A0A8WI99	Clostridium_phage	100.0	6.2e-58
WP_015994379.1|187076_187448_+	hypothetical protein	NA	A0A0A8WJ20	Clostridium_phage	100.0	8.2e-67
WP_015994380.1|187450_187633_+	hypothetical protein	NA	A0A0A8WIL2	Clostridium_phage	100.0	1.6e-28
WP_021378977.1|187707_188049_+	peptide chain release factor-like protein	NA	A0A0A8WJB8	Clostridium_phage	100.0	9.0e-60
WP_021368352.1|188174_188582_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A090D860	Clostridium_phage	93.3	9.4e-64
WP_021368350.1|188596_189322_+	antA/AntB antirepressor family protein	NA	A0A090DCZ8	Clostridium_phage	100.0	4.6e-130
WP_011861022.1|189415_189904_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	100.0	6.1e-86
WP_015994390.1|190464_191142_+	Bro-N domain-containing protein	NA	A0A0A8WJQ8	Clostridium_phage	100.0	3.2e-125
WP_015994339.1|191204_191906_+|terminase	terminase small subunit	terminase	A0A0A8WJN3	Clostridium_phage	100.0	1.0e-126
WP_016056315.1|191898_193308_+	DEAD/DEAH box helicase family protein	NA	A0A0A8WEW2	Clostridium_phage	100.0	1.6e-272
WP_016056316.1|193298_194801_+|portal	phage portal protein	portal	A0A0A8WI73	Clostridium_phage	100.0	3.5e-289
WP_021364160.1|194793_195801_+	hypothetical protein	NA	A0A0A8WIZ2	Clostridium_phage	100.0	5.9e-192
WP_016056318.1|195820_197155_+	hypothetical protein	NA	A0A0A8WFF1	Clostridium_phage	100.0	1.5e-235
WP_015994344.1|197170_197554_+	DUF2190 family protein	NA	A0A0A8WJN5	Clostridium_phage	100.0	5.5e-66
WP_015994345.1|197572_198610_+	hypothetical protein	NA	A0A0A8WEW9	Clostridium_phage	100.0	3.2e-177
WP_016056319.1|198649_198988_+	hypothetical protein	NA	A0A0A8WI74	Clostridium_phage	100.0	1.4e-57
WP_016056320.1|198984_199362_+	hypothetical protein	NA	A0A0A8WIZ3	Clostridium_phage	100.0	5.1e-64
WP_016056321.1|199363_199774_+	hypothetical protein	NA	A0A0A8WFF6	Clostridium_phage	100.0	1.0e-73
WP_021364150.1|199774_200596_+	hypothetical protein	NA	A0A0A8WJN6	Clostridium_phage	100.0	4.7e-155
WP_021364175.1|200608_200812_+	hypothetical protein	NA	A0A0A8WEX5	Clostridium_phage	100.0	5.4e-28
WP_021364158.1|200813_202235_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A0A8WI77	Clostridium_phage	100.0	5.4e-268
WP_021362367.1|202250_202673_+	hypothetical protein	NA	A0A0A8WIZ6	Clostridium_phage	100.0	5.5e-75
WP_021362368.1|202751_203225_+	phage XkdN-like family protein	NA	A0A0A8WFG0	Clostridium_phage	100.0	1.3e-77
WP_021364196.1|203405_207734_+|tail	phage tail tape measure protein	tail	A0A0A8WJN8	Clostridium_phage	100.0	0.0e+00
205706:205722	attR	TTTTGATATTGTTGGAG	NA	NA	NA	NA
WP_021364171.1|207813_208608_+	hypothetical protein	NA	A0A0A8WEX9	Clostridium_phage	100.0	2.1e-96
WP_021364193.1|208677_209349_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A8WI78	Clostridium_phage	100.0	1.9e-122
WP_016056331.1|209345_210308_+	hypothetical protein	NA	A0A0A8WIZ7	Clostridium_phage	100.0	1.9e-176
WP_016056332.1|210300_210666_+	hypothetical protein	NA	A0A0A8WFG6	Clostridium_phage	100.0	3.5e-62
WP_021364177.1|210640_211099_+	DUF2634 domain-containing protein	NA	A0A0A8WJP0	Clostridium_phage	100.0	1.5e-81
WP_021364165.1|211107_212244_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WEY6	Clostridium_phage	100.0	8.3e-211
WP_021364184.1|212240_212870_+	YmfQ family protein	NA	A0A0A8WI80	Clostridium_phage	100.0	7.1e-111
WP_021364198.1|212882_213989_+|tail	phage tail protein	tail	A0A0A8WIZ9	Clostridium_phage	100.0	5.0e-176
WP_021364189.1|214002_214641_+	hypothetical protein	NA	A0A0A8WFH1	Clostridium_phage	100.0	7.2e-111
WP_021364148.1|214650_214863_+	hypothetical protein	NA	A0A0A8WJP1	Clostridium_phage	100.0	3.5e-30
WP_009898423.1|214862_215045_+	hypothetical protein	NA	A0A0A8WJT8	Clostridium_phage	100.0	4.5e-26
WP_021364143.1|215078_216314_+	hypothetical protein	NA	A0A0A8WI81	Clostridium_phage	100.0	6.5e-233
WP_009895122.1|216310_216610_+	hypothetical protein	NA	A0A0A8WJ01	Clostridium_phage	100.0	3.1e-48
WP_021364182.1|216610_216748_+	XkdX family protein	NA	A0A0A8WFH6	Clostridium_phage	100.0	3.1e-19
WP_021364174.1|216875_218441_+	glycine rich family protein	NA	A0A0A8WJP3	Clostridium_phage	100.0	1.8e-264
WP_021364192.1|218498_218729_+	hemolysin XhlA family protein	NA	A0A0A8WEZ7	Clostridium_phage	100.0	1.3e-33
WP_009898413.1|218748_219006_+|holin	phage holin family protein	holin	A0A0A8WJ67	Clostridium_phage	100.0	4.1e-41
WP_016056343.1|219005_219818_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WJ04	Clostridium_phage	100.0	1.3e-157
WP_016056344.1|220067_220559_+	hypothetical protein	NA	A0A0A8WFI1	Clostridium_phage	100.0	5.4e-90
WP_016056345.1|220560_221127_+	hypothetical protein	NA	A0A0A8WJP5	Clostridium_phage	100.0	7.4e-43
WP_009898401.1|221536_221725_-	hypothetical protein	NA	A0A0A8WJ69	Clostridium_phage	100.0	3.1e-30
WP_011861731.1|221982_222126_+	hypothetical protein	NA	A0A0A8WJ06	Clostridium_phage	100.0	3.9e-17
WP_021376798.1|222633_223023_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFI6	Clostridium_phage	100.0	1.7e-62
WP_021364164.1|223116_223500_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJP7	Clostridium_phage	100.0	1.9e-66
>prophage 13
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	227769	231198	4188456		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_021364176.1|227769_231198_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	37.6	2.8e-177
>prophage 14
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	241248	259367	4188456	transposase	Synechococcus_phage(20.0%)	16	NA	NA
WP_003435056.1|241248_241647_+|transposase	IS200/IS605 family transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
WP_003435058.1|241643_242807_+|transposase	transposase	transposase	A0A0A8WI33	Clostridium_phage	99.0	1.7e-219
WP_009895309.1|243190_243703_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.6	3.5e-84
WP_003425290.1|244152_244629_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|244634_245333_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|245344_246712_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|246705_247782_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|247775_248369_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_021362141.1|248361_249894_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_021367500.1|249904_251155_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_021364154.1|251179_254986_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.5	1.0e-31
WP_009895318.1|255191_256064_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	2.3e-14
WP_003436059.1|256172_257042_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	61.1	8.1e-97
WP_003436058.1|257090_257648_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.6	1.3e-47
WP_021358779.1|257685_258669_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.0	1.1e-78
WP_009895321.1|258698_259367_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	46.9	4.1e-24
>prophage 15
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	277633	278725	4188456		Moumouvirus(100.0%)	1	NA	NA
WP_021364180.1|277633_278725_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2P1ELT3	Moumouvirus	32.9	3.7e-38
>prophage 16
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	297940	298642	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_003435969.1|297940_298642_+	FliA/WhiG family RNA polymerase sigma factor	NA	A0A0Y0AU18	Bacillus_phage	25.6	2.8e-07
>prophage 17
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	303677	305615	4188456		Catovirus(100.0%)	1	NA	NA
WP_003435963.1|303677_305615_+	molecular chaperone HtpG	NA	A0A1V0SAD6	Catovirus	32.0	4.6e-60
>prophage 18
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	323311	325528	4188456		Clostridium_phage(50.0%)	3	NA	NA
WP_003435932.1|323311_324406_+	helix-turn-helix transcriptional regulator	NA	A0A090D830	Clostridium_phage	33.7	1.2e-07
WP_003425157.1|324410_324611_+	PLDc N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_009895368.1|324610_325528_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	36.8	2.8e-31
>prophage 19
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	332367	333879	4188456		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003435916.1|332367_333879_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	2.2e-17
>prophage 20
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	344247	347023	4188456		Streptococcus_phage(100.0%)	2	NA	NA
WP_003437587.1|344247_344613_+	helix-turn-helix domain-containing protein	NA	E4ZFI8	Streptococcus_phage	40.4	7.2e-15
WP_021364140.1|344635_347023_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.9	5.1e-117
>prophage 21
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	355314	358021	4188456		Staphylococcus_phage(50.0%)	3	NA	NA
WP_021364207.1|355314_356238_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.4	7.4e-40
WP_009888178.1|356394_357318_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_021364204.1|357319_358021_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.0	8.6e-33
>prophage 22
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	363365	369390	4188456		Staphylococcus_phage(33.33%)	5	NA	NA
WP_009895392.1|363365_364184_+	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.9	2.9e-16
WP_009888186.1|364438_366703_+	DUF3553 domain-containing protein	NA	A7KV33	Bacillus_phage	44.5	6.7e-143
WP_021364205.1|366719_368018_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_003434193.1|368048_368801_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003425966.1|368865_369390_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	45.6	4.2e-24
>prophage 23
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	378229	378901	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_003434821.1|378229_378901_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	2.6e-34
>prophage 24
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	407346	408345	4188456		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_003431407.1|407346_408345_-	D-2-hydroxyacid dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	34.8	3.7e-45
>prophage 25
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	421065	426002	4188456		Clostridium_phage(50.0%)	5	NA	NA
WP_032506959.1|421065_422427_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	34.4	2.0e-57
WP_021364256.1|422948_423983_+	YHYH domain-containing protein	NA	NA	NA	NA	NA
WP_003426228.1|424069_424273_+	DUF4236 domain-containing protein	NA	A0A0A8WIL0	Clostridium_phage	74.1	1.5e-14
WP_021364250.1|424443_425604_+	cell wall-binding protein Cwp27	NA	A0A2R2ZGK6	Clostridioides_phage	47.9	1.7e-70
WP_003434654.1|425861_426002_+	hypothetical protein	NA	A0A0A8WIQ0	Clostridium_phage	90.7	2.3e-14
>prophage 26
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	440156	440993	4188456		Streptococcus_phage(100.0%)	1	NA	NA
WP_016728753.1|440156_440993_+	helix-turn-helix transcriptional regulator	NA	D0R0F8	Streptococcus_phage	33.0	2.2e-06
>prophage 27
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	445028	445712	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_009888282.1|445028_445712_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	7.1e-32
>prophage 28
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	449730	450393	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_021364228.1|449730_450393_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.4	2.8e-25
>prophage 29
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	460594	460981	4188456		Clostridium_phage(100.0%)	1	NA	NA
WP_003417583.1|460594_460981_-	BlaI/MecI/CopY family transcriptional regulator	NA	X5JAW5	Clostridium_phage	31.7	3.7e-09
>prophage 30
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	465540	473353	4188456		Bacillus_phage(50.0%)	7	NA	NA
WP_003434737.1|465540_466245_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.6	4.7e-55
WP_100852715.1|466241_467012_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_011860831.1|467008_467785_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_003434748.1|467839_468532_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.4	4.1e-27
WP_003434751.1|468550_469975_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	31.6	3.7e-30
WP_021368197.1|470213_472682_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003434757.1|472684_473353_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	2.7e-36
>prophage 31
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	477026	480817	4188456		Acanthocystis_turfacea_Chlorella_virus(50.0%)	4	NA	NA
WP_021364230.1|477026_477854_-	carbon-nitrogen hydrolase family protein	NA	M1I268	Acanthocystis_turfacea_Chlorella_virus	29.0	6.2e-22
WP_003417824.1|478235_478556_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA	NA
WP_003426355.1|478688_479369_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA	NA
WP_021362218.1|479764_480817_+	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	31.2	1.3e-13
>prophage 32
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	483986	485340	4188456		Clostridioides_phage(100.0%)	2	NA	NA
WP_016728737.1|483986_485126_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	94.2	3.0e-200
WP_003426367.1|485151_485340_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	88.7	1.4e-19
>prophage 33
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	490884	492129	4188456		Erythrobacter_phage(100.0%)	1	NA	NA
WP_021378388.1|490884_492129_-	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	31.1	1.8e-09
>prophage 34
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	498641	505212	4188456		Hokovirus(50.0%)	4	NA	NA
WP_003439079.1|498641_500249_+	DUF4118 domain-containing protein	NA	A0A1V0SGX0	Hokovirus	26.8	4.6e-13
WP_003439080.1|500239_500944_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_009895551.1|501236_501389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021364255.1|502113_505212_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	29.3	1.7e-08
>prophage 35
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	514526	521765	4188456		Streptococcus_phage(25.0%)	8	NA	NA
WP_003439096.1|514526_515438_+	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	33.5	5.6e-16
WP_009895561.1|515612_516110_+	effector binding domain-containing protein	NA	NA	NA	NA	NA
WP_003439098.1|516853_517216_+	response regulator	NA	A0A220YL79	Alteromonas_virus	29.2	3.5e-06
WP_032506523.1|517280_517898_+	chemotaxis protein CheC	NA	NA	NA	NA	NA
WP_003425085.1|517894_518380_+	chemotaxis protein CheD	NA	NA	NA	NA	NA
WP_016728564.1|518422_518941_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_009895564.1|519076_520036_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	39.5	1.4e-25
WP_003425090.1|520061_521765_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	40.6	1.5e-09
>prophage 36
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	527091	528081	4188456		Klosneuvirus(100.0%)	1	NA	NA
WP_021364226.1|527091_528081_+	ornithine cyclodeaminase family protein	NA	A0A1V0SL93	Klosneuvirus	30.4	5.5e-17
>prophage 37
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	535042	536314	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_003425119.1|535042_536314_-	spore cortex-lytic protein SleC	NA	A0A127AWA8	Bacillus_phage	42.0	6.2e-05
>prophage 38
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	545158	545995	4188456		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_021363266.1|545158_545995_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.8	1.6e-30
>prophage 39
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	549795	552033	4188456		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_021364265.1|549795_552033_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
>prophage 40
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	561160	566949	4188456	transposase,tRNA	Tupanvirus(50.0%)	3	NA	NA
WP_009888359.1|561160_563080_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
WP_021360187.1|563847_564939_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	NA	NA	NA	NA
WP_021364272.1|565608_566949_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.6	2.0e-78
>prophage 41
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	573234	578829	4188456		Hokovirus(50.0%)	3	NA	NA
WP_021364277.1|573234_575802_+	pyruvate phosphate dikinase PEP/pyruvate-binding domain protein	NA	A0A1V0SGR7	Hokovirus	38.9	4.6e-47
WP_021381644.1|576419_577301_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_021364274.1|577650_578829_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	27.3	1.5e-08
>prophage 42
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	591683	598303	4188456		Streptococcus_phage(100.0%)	6	NA	NA
WP_021364276.1|591683_593783_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.5	2.2e-71
WP_003438917.1|593825_594221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438914.1|595267_595456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003438911.1|595640_596081_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_003438907.1|596435_597749_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	40.8	2.8e-93
WP_003429542.1|597766_598303_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	69.7	1.2e-63
>prophage 43
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	601357	601891	4188456		Streptococcus_phage(100.0%)	1	NA	NA
WP_021364280.1|601357_601891_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	49.4	1.6e-34
>prophage 44
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	610410	611748	4188456		Clostridium_phage(100.0%)	1	NA	NA
WP_021364289.1|610410_611748_-	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	23.7	5.0e-13
>prophage 45
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	615386	616139	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_009895631.1|615386_616139_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.3	6.9e-28
>prophage 46
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	623904	627368	4188456		Clostridioides_phage(50.0%)	2	NA	NA
WP_021364295.1|623904_625143_+	conserved phage C-terminal domain-containing protein	NA	A0A1V0E018	Clostridioides_phage	34.0	3.9e-12
WP_003437698.1|626066_627368_+	AAA family ATPase	NA	A0A218KST2	Xenohaliotis_phage	29.3	1.1e-20
>prophage 47
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	644609	646526	4188456		Bacillus_phage(50.0%)	2	NA	NA
WP_021368207.1|644609_645527_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	29.4	5.4e-19
WP_009902055.1|645599_646526_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	45.4	3.0e-41
>prophage 48
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	660519	663613	4188456		Streptococcus_phage(50.0%)	3	NA	NA
WP_021361784.1|660519_661776_+	chloride channel protein	NA	A0A1X9I5Z9	Streptococcus_phage	51.8	8.3e-95
WP_021377330.1|661838_663032_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003434522.1|663232_663613_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WHZ2	Clostridium_phage	63.4	3.5e-36
>prophage 49
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	672613	673114	4188456	holin	Clostridium_phage(100.0%)	1	NA	NA
WP_003434540.1|672613_673114_+|holin	holin-like glycosylating toxin export protein TcdE	holin	A0A090D848	Clostridium_phage	83.5	1.8e-56
>prophage 50
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	682308	683007	4188456		Lactobacillus_phage(100.0%)	1	NA	NA
WP_011860905.1|682308_683007_-	glycosylating toxin anti-sigma factor TcdC	NA	O64371	Lactobacillus_phage	54.2	8.4e-20
>prophage 51
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	686552	691984	4188456		Staphylococcus_phage(25.0%)	4	NA	NA
WP_170320070.1|686552_687476_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.2	1.3e-41
WP_009888460.1|687637_688345_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.4	4.2e-35
WP_021364310.1|688389_689796_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.2	2.5e-07
WP_003426867.1|691594_691984_+	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	47.2	2.1e-28
>prophage 52
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	703453	709276	4188456		Aeromonas_phage(33.33%)	4	NA	NA
WP_003439138.1|703453_705052_+	sodium/solute symporter	NA	A0A240F3J2	Aeromonas_phage	26.0	5.4e-22
WP_003429728.1|705086_706109_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003439135.1|706496_707900_-	AAA family ATPase	NA	H8ZJI5	Ostreococcus_tauri_virus	44.7	6.2e-99
WP_011860916.1|708766_709276_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	35.5	5.9e-15
>prophage 53
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	726853	727873	4188456	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_003436795.1|726853_727873_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	36.4	4.3e-33
>prophage 54
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	732326	747136	4188456	tRNA	Phage_TP(25.0%)	9	NA	NA
WP_021364325.1|732326_734927_+	U32 family peptidase	NA	Q6DW11	Phage_TP	30.2	2.2e-28
WP_021364317.1|735030_735609_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_003436879.1|735643_736120_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_009895755.1|736637_737459_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_032507083.1|737681_740195_+	transporter substrate-binding domain-containing protein	NA	G3MA91	Bacillus_virus	30.8	1.4e-16
WP_003436882.1|740398_741850_-	aminoacyl-histidine dipeptidase	NA	NA	NA	NA	NA
WP_009895762.1|742168_744547_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	31.9	4.6e-09
WP_003436884.1|744612_745026_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_003436885.1|745435_747136_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	38.4	3.4e-99
>prophage 55
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	763412	764798	4188456		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_003436922.1|763412_764798_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.4	3.2e-47
>prophage 56
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	774422	775361	4188456		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_021360261.1|774422_775361_+	radical SAM protein	NA	A0A1B1IVD8	uncultured_Mediterranean_phage	27.8	6.4e-07
>prophage 57
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	790660	800752	4188456		Pseudomonas_phage(25.0%)	6	NA	NA
WP_009895801.1|790660_793690_+	EAL domain-containing protein	NA	A0A2K8I9Y5	Pseudomonas_phage	42.7	6.0e-06
WP_003436959.1|793766_795833_+	ATP-dependent helicase	NA	A0A068EQC7	Bacillus_phage	31.7	1.9e-83
WP_003432207.1|796651_797467_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_009888558.1|797494_798172_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003432205.1|798230_798953_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.2	3.9e-28
WP_021364329.1|799600_800752_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.7	6.4e-33
>prophage 58
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	807020	813204	4188456		Tetraselmis_virus(66.67%)	4	NA	NA
WP_003437451.1|807020_807755_-	pyruvate formate lyase-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	30.5	4.6e-29
WP_003437454.1|807914_810146_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	44.7	1.7e-183
WP_161792514.1|810438_811500_+	calcium/sodium antiporter	NA	NA	NA	NA	NA
WP_003437464.1|811590_813204_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	38.3	2.7e-69
>prophage 59
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	822469	823234	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_003418417.1|822469_823234_+	RNA polymerase sporulation sigma factor SigF	NA	A0A0A0RV91	Bacillus_phage	43.4	5.7e-46
>prophage 60
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	836961	838512	4188456		Klosneuvirus(100.0%)	1	NA	NA
WP_009902156.1|836961_838512_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	32.0	3.5e-58
>prophage 61
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	842608	848171	4188456		Streptococcus_phage(33.33%)	7	NA	NA
WP_021364343.1|842608_843253_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	40.8	5.1e-32
WP_003437529.1|843338_843716_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_003437532.1|843715_844102_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_003437535.1|844280_845036_+	NAD(+) synthase	NA	E3SLH5	Synechococcus_phage	34.5	1.8e-28
WP_003437537.1|845118_845838_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003437541.1|846004_847009_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011860958.1|847274_848171_+	hydroxymethylglutaryl-CoA lyase	NA	A0A1V0SKU2	Klosneuvirus	33.8	5.0e-33
>prophage 62
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	872778	875474	4188456		Bacillus_phage(33.33%)	3	NA	NA
WP_009888625.1|872778_873471_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	8.5e-33
WP_022620459.1|873467_874403_+	HAMP domain-containing histidine kinase	NA	A0A2K9L114	Tupanvirus	24.2	1.8e-09
WP_004454245.1|874550_875474_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.7	1.3e-41
>prophage 63
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	883620	884730	4188456		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_009888643.1|883620_884730_-	DEAD/DEAH box helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	38.5	3.2e-58
>prophage 64
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	890775	898204	4188456	protease	Clostridioides_phage(66.67%)	8	NA	NA
WP_016728722.1|890775_891297_+	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	38.5	7.4e-21
WP_004453624.1|891485_891797_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_009895864.1|891824_892511_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_011860969.1|892742_893627_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_004453621.1|893725_894901_+	phosphoribosylaminoimidazolecarboxamide formyltransferase	NA	S4VT61	Pandoravirus	24.4	7.2e-16
WP_004454225.1|895028_895883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021364356.1|895926_897162_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_004454223.1|897262_898204_+	cell wall-binding protein Cwp25	NA	A0A2R2ZGK6	Clostridioides_phage	41.8	7.7e-61
>prophage 65
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	909193	910219	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_004454207.1|909193_910219_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.5	9.7e-17
>prophage 66
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	918928	919789	4188456		Tupanvirus(100.0%)	1	NA	NA
WP_012816064.1|918928_919789_+	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	35.9	8.7e-35
>prophage 67
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	927509	931852	4188456		Indivirus(100.0%)	4	NA	NA
WP_003437183.1|927509_928265_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	30.3	6.1e-16
WP_003439333.1|928251_929154_-	ABC transporter	NA	NA	NA	NA	NA
WP_021364075.1|929962_931000_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_021397571.1|931096_931852_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	28.4	7.4e-14
>prophage 68
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	935764	936808	4188456		Moumouvirus(100.0%)	1	NA	NA
WP_003437173.1|935764_936808_+	SPFH/Band 7/PHB domain protein	NA	A0A2P1EMF1	Moumouvirus	33.3	2.1e-19
>prophage 69
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	948743	951272	4188456		Cyanophage(33.33%)	4	NA	NA
WP_003418655.1|948743_949157_+	adenosylmethionine decarboxylase	NA	A0A1D7SEZ2	Cyanophage	45.7	1.1e-16
WP_009888722.1|949186_950038_+	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	28.3	1.3e-19
WP_021364361.1|950027_950906_+	agmatinase	NA	NA	NA	NA	NA
WP_003418660.1|951071_951272_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	66.7	3.8e-18
>prophage 70
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	960451	961588	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_003437132.1|960451_961588_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.5	8.0e-28
>prophage 71
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	973229	973676	4188456		Clostridioides_phage(100.0%)	1	NA	NA
WP_011861059.1|973229_973676_+	hypothetical protein	NA	A0A1V0E019	Clostridioides_phage	38.5	1.0e-10
>prophage 72
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	981319	982261	4188456		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_003437082.1|981319_982261_+	D-3-phosphoglycerate dehydrogenase	NA	M1I539	Acanthocystis_turfacea_Chlorella_virus	30.3	3.0e-28
>prophage 73
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	988094	992573	4188456		Pseudomonas_phage(50.0%)	4	NA	NA
WP_003437073.1|988094_990029_+	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	41.3	6.3e-49
WP_009895950.1|990134_991130_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009888755.1|991101_991887_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003437066.1|991874_992573_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	3.6e-23
>prophage 74
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	997505	1000196	4188456		Bacillus_phage(66.67%)	3	NA	NA
WP_021364382.1|997505_998189_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.2	8.4e-25
WP_021364378.1|998199_999441_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	28.1	1.8e-20
WP_009888764.1|999512_1000196_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.6	2.5e-37
>prophage 75
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1008355	1009843	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_009895965.1|1008355_1009843_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.4	1.3e-22
>prophage 76
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1012926	1016553	4188456		Bacillus_phage(100.0%)	2	NA	NA
WP_011861067.1|1012926_1014654_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	3.0e-50
WP_003437025.1|1014690_1016553_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.9	2.4e-53
>prophage 77
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1022423	1023467	4188456		Mycoplasma_phage(100.0%)	1	NA	NA
WP_003437017.1|1022423_1023467_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	41.7	2.4e-39
>prophage 78
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1028916	1030173	4188456		Catovirus(100.0%)	1	NA	NA
WP_003437008.1|1028916_1030173_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	25.9	1.0e-07
>prophage 79
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1033452	1035629	4188456		Catovirus(50.0%)	2	NA	NA
WP_021364371.1|1033452_1034577_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.2	2.5e-21
WP_009902239.1|1034654_1035629_+	glucosaminidase domain-containing protein	NA	A0A0A7RUS8	Clostridium_phage	50.0	2.6e-35
>prophage 80
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1041025	1043044	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_021379728.1|1041025_1043044_+	N-acetylmuramoyl-L-alanine amidase	NA	J9PV86	Bacillus_phage	35.6	3.9e-17
>prophage 81
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1054326	1062925	4188456		Bacillus_phage(50.0%)	3	NA	NA
WP_021364398.1|1054326_1058154_+	helicase-exonuclease AddAB subunit AddA	NA	S5M596	Bacillus_phage	24.1	2.9e-13
WP_003437948.1|1058199_1059411_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_021364406.1|1059397_1062925_+	AAA family ATPase	NA	G3MAB6	Bacillus_virus	26.8	1.4e-09
>prophage 82
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1070031	1070892	4188456		Staphylococcus_phage(100.0%)	1	NA	NA
WP_021392953.1|1070031_1070892_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.8	2.3e-19
>prophage 83
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1080565	1081941	4188456		Clostridium_phage(50.0%)	2	NA	NA
WP_003437972.1|1080565_1081570_+	nucleoid-associated protein	NA	J9QE81	Clostridium_phage	79.6	2.3e-151
WP_003418905.1|1081713_1081941_-	acyl carrier protein	NA	A0A2C9CX86	Yersinia_phage	45.5	2.6e-07
>prophage 84
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1097871	1098777	4188456		Lactobacillus_phage(100.0%)	1	NA	NA
WP_003438004.1|1097871_1098777_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.0	6.4e-12
>prophage 85
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1102469	1104170	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_003438014.1|1102469_1104170_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.4	2.3e-63
>prophage 86
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1108802	1110889	4188456		Clostridioides_phage(50.0%)	2	NA	NA
WP_003438019.1|1108802_1109516_+	two-component system response regulator RgbR	NA	A0A2R2ZGH8	Clostridioides_phage	37.7	7.0e-30
WP_021364401.1|1109509_1110889_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	30.0	2.6e-33
>prophage 87
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1114426	1115329	4188456		Tetraselmis_virus(100.0%)	1	NA	NA
WP_021364389.1|1114426_1115329_+	glycyl-radical enzyme activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	30.3	1.5e-13
>prophage 88
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1122528	1126335	4188456		Bacillus_phage(100.0%)	3	NA	NA
WP_003438039.1|1122528_1125177_+	DNA polymerase I	NA	A0A142F1Q9	Bacillus_phage	38.2	4.0e-54
WP_003438041.1|1125185_1125788_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003438043.1|1125780_1126335_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXN2	Bacillus_phage	36.2	3.1e-09
>prophage 89
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1129865	1131140	4188456		Clostridium_phage(100.0%)	1	NA	NA
WP_021362447.1|1129865_1131140_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	44.6	3.8e-26
>prophage 90
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1161635	1162202	4188456	integrase	Bacillus_phage(100.0%)	1	1159991:1160005	1163866:1163880
1159991:1160005	attL	TATACTATTAAACAT	NA	NA	NA	NA
WP_003419093.1|1161635_1162202_-|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	35.2	1.5e-11
WP_003419093.1|1161635_1162202_-|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	35.2	1.5e-11
1163866:1163880	attR	ATGTTTAATAGTATA	NA	NA	NA	NA
>prophage 91
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1168020	1169412	4188456		Tupanvirus(100.0%)	1	NA	NA
WP_003438093.1|1168020_1169412_+	FAD-binding oxidoreductase	NA	A0A2K9L3G7	Tupanvirus	28.1	1.2e-06
>prophage 92
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1178244	1182483	4188456		Trichoplusia_ni_ascovirus(33.33%)	4	NA	NA
WP_003428442.1|1178244_1178994_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.1	5.8e-19
WP_003419132.1|1179047_1179272_+	acyl carrier protein	NA	A0A2C9CY51	Yersinia_phage	44.4	1.6e-09
WP_003438103.1|1179300_1180539_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_009902296.1|1180764_1182483_+	diguanylate cyclase	NA	G3MA91	Bacillus_virus	30.6	1.4e-15
>prophage 93
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1197705	1200018	4188456		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_003438130.1|1197705_1198911_+	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	34.3	1.2e-50
WP_003428410.1|1198912_1199128_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_009888951.1|1199130_1200018_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	27.0	1.1e-05
>prophage 94
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1208554	1209379	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_003424711.1|1208554_1209379_+	sporulation transcription factor Spo0A	NA	W8CYM9	Bacillus_phage	31.7	3.9e-08
>prophage 95
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1215648	1226011	4188456	integrase	Escherichia_phage(20.0%)	9	1214843:1214859	1224276:1224292
1214843:1214859	attL	AGTTTTTAGATGTCTAT	NA	NA	NA	NA
WP_003428375.1|1215648_1216563_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	27.4	8.1e-07
WP_003438158.1|1216604_1217777_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_003438160.1|1217823_1218636_+	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	40.9	1.0e-61
WP_009896135.1|1218839_1220165_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	56.0	1.3e-130
WP_003438164.1|1220377_1221457_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003438166.1|1221628_1222303_+	O-methyltransferase	NA	NA	NA	NA	NA
WP_003438167.1|1222289_1223537_+	U32 family peptidase	NA	Q6DW11	Phage_TP	37.6	2.1e-58
WP_003438168.1|1223608_1225273_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
1224276:1224292	attR	ATAGACATCTAAAAACT	NA	NA	NA	NA
WP_003428359.1|1225369_1226011_-	RNA polymerase sporulation sigma factor SigK	NA	A0A2H4JC68	uncultured_Caudovirales_phage	38.8	4.4e-15
>prophage 96
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1230162	1230873	4188456		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_003428341.1|1230162_1230873_+	ribonuclease III	NA	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	33.9	4.2e-27
>prophage 97
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1247051	1250076	4188456		Clostridioides_phage(50.0%)	2	NA	NA
WP_003438236.1|1247051_1249241_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	NA	A0A2R2ZGN9	Clostridioides_phage	64.2	2.1e-210
WP_003438239.1|1249308_1250076_+	ribonuclease HII	NA	A0A0N9QYD4	Chrysochromulina_ericina_virus	38.6	1.5e-22
>prophage 98
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1254558	1255494	4188456		Staphylococcus_phage(100.0%)	1	NA	NA
WP_021363427.1|1254558_1255494_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.7	2.2e-23
>prophage 99
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1260737	1272664	4188456	tRNA	Catovirus(20.0%)	9	NA	NA
WP_009892959.1|1260737_1262825_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	36.4	2.5e-104
WP_003438268.1|1262989_1263775_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_021364411.1|1263881_1265147_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	42.9	3.3e-83
WP_021364417.1|1265177_1265948_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003419409.1|1266056_1266503_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_021364416.1|1266520_1267714_+	cysteine desulfurase NifS	NA	H7BUW1	unidentified_phage	40.2	5.6e-40
WP_003438275.1|1267767_1268208_+	Fe-S cluster assembly scaffold protein NifU	NA	A0A2H4N7M4	Lake_Baikal_phage	53.5	2.3e-31
WP_003438277.1|1268496_1269576_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_009889064.1|1270024_1272664_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	33.8	1.7e-65
>prophage 100
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1280071	1281235	4188456		Stx2-converting_phage(100.0%)	1	NA	NA
WP_021364412.1|1280071_1281235_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	29.0	4.2e-32
>prophage 101
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1284369	1377664	4188456	portal,plate,tRNA,protease,integrase,transposase,tail	Clostridium_phage(37.14%)	87	1302660:1302678	1379141:1379159
WP_003428258.1|1284369_1284909_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	37.0	1.6e-18
WP_003438288.1|1285070_1285700_+	DUF2953 domain-containing protein	NA	NA	NA	NA	NA
WP_003419458.1|1285653_1286082_+	GerW family sporulation protein	NA	NA	NA	NA	NA
WP_003419459.1|1286329_1286770_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021364415.1|1286785_1288237_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	39.1	3.7e-54
WP_003438292.1|1288327_1288996_-	YwaF family protein	NA	NA	NA	NA	NA
WP_003419462.1|1289264_1289405_+	hypothetical protein	NA	B6SBZ7	Clostridium_virus	53.7	1.5e-05
WP_003428248.1|1289579_1289900_-	MazG-like family protein	NA	NA	NA	NA	NA
WP_003428245.1|1290019_1290757_-	NAD-dependent protein deacylase	NA	S5M4R0	Bacillus_phage	32.9	2.6e-27
WP_003438294.1|1290971_1292795_+	N-acetylglucosaminidase	NA	Q4ZE13	Staphylococcus_virus	33.8	1.0e-21
WP_003438301.1|1293009_1297308_+	PolC-type DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	40.1	1.7e-25
WP_003438303.1|1297511_1297973_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_003428238.1|1298002_1299157_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_003419469.1|1299163_1299445_+	YlxR family protein	NA	NA	NA	NA	NA
WP_003419470.1|1299434_1299746_+	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_003438306.1|1299767_1301708_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.6	3.7e-25
WP_003428234.1|1301750_1302131_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
1302660:1302678	attL	TGAAATGGCAAAAAATTTA	NA	NA	NA	NA
WP_032548186.1|1303428_1304547_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.5	1.8e-109
WP_003428232.1|1304982_1305888_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003438310.1|1306018_1306948_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_003419491.1|1307051_1307309_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_009889099.1|1307548_1308394_+	DegV family protein	NA	NA	NA	NA	NA
WP_003438316.1|1308518_1310630_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003438319.1|1310895_1311639_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_009902409.1|1311796_1313044_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.4	1.0e-52
WP_021364423.1|1313078_1313324_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_003438324.1|1313333_1314557_+	aspartate kinase	NA	NA	NA	NA	NA
WP_021364422.1|1314669_1315404_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	NA	NA	NA	NA
WP_003438328.1|1315526_1317938_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_003433322.1|1317940_1318999_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_003433320.1|1318992_1320327_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_009889106.1|1320313_1320856_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_021364420.1|1321143_1322190_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	1.2e-123
WP_003428216.1|1322365_1323907_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1324541_1326323_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009902411.1|1326404_1326935_-	signal peptidase I	NA	NA	NA	NA	NA
WP_003438350.1|1326974_1327799_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1328055_1328964_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003438353.1|1329107_1330553_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1330863_1331316_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021364419.1|1331727_1333305_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1333452_1334205_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021359123.1|1334343_1335684_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1335795_1336992_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009889113.1|1337376_1338327_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1338487_1339240_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009896237.1|1339331_1340108_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1340422_1342321_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003438374.1|1342448_1343570_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1343768_1344101_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021367719.1|1344087_1345146_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_021364425.1|1345138_1346209_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1346310_1346847_+	lipoprotein	NA	NA	NA	NA	NA
WP_009902422.1|1346962_1347670_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.5	1.2e-55
WP_009896246.1|1347671_1348388_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009902423.1|1348389_1349148_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_021364432.1|1349282_1350671_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_021364435.1|1350746_1351568_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_003438399.1|1351803_1352973_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1353155_1353356_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1353776_1354205_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1354347_1355103_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_003428186.1|1355803_1356310_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1356391_1356712_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1356880_1357078_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003428183.1|1357182_1357623_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
WP_003438413.1|1357871_1358315_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	35.4	3.8e-18
WP_003438414.1|1358319_1359384_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1V0DZX4	Clostridioides_phage	52.8	7.6e-97
WP_003419646.1|1359397_1359826_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_003419647.1|1359939_1360386_+|portal	phage portal protein	portal	A0A090EUD0	Clostridium_phage	36.0	8.2e-13
WP_003419648.1|1360412_1360580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003438437.1|1360579_1363033_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	55.7	6.1e-17
WP_003428168.1|1363032_1363455_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
WP_003438440.1|1363736_1365266_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	2.2e-243
WP_003438447.1|1365281_1365608_+	DUF2577 family protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003438449.1|1365607_1366036_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	4.4e-64
WP_003438450.1|1366028_1367081_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.0	2.7e-139
WP_003438451.1|1367077_1367776_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
WP_003438452.1|1367776_1368760_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	47.8	6.4e-58
WP_021364429.1|1368776_1374098_+	regulator of chromosome condensation (RCC1) repeat family protein	NA	A0A0A8WEY5	Clostridium_phage	30.8	2.5e-108
WP_021364427.1|1374114_1374468_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	41.2	2.7e-11
WP_003419670.1|1374730_1374991_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1375197_1375653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1375880_1376300_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1376598_1376808_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_009889160.1|1376839_1377049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428144.1|1377265_1377664_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1379141:1379159	attR	TAAATTTTTTGCCATTTCA	NA	NA	NA	NA
>prophage 102
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1389105	1390173	4188456		Oenococcus_phage(100.0%)	1	NA	NA
WP_003438474.1|1389105_1390173_+	dipeptide epimerase	NA	Q6A202	Oenococcus_phage	27.0	1.7e-16
>prophage 103
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1402967	1411053	4188456		Tupanvirus(66.67%)	5	NA	NA
WP_021364439.1|1402967_1403699_-	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	33.8	1.1e-22
WP_016729577.1|1404029_1406219_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	28.4	3.5e-56
WP_021360497.1|1406629_1408558_+	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
WP_003438510.1|1408544_1408892_+	PqqD family protein	NA	NA	NA	NA	NA
WP_021359140.1|1409133_1411053_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.9	3.6e-57
>prophage 104
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1414572	1415829	4188456		Pseudomonas_phage(100.0%)	1	NA	NA
WP_003438532.1|1414572_1415829_+	competence/damage-inducible protein A	NA	B5TK85	Pseudomonas_phage	34.7	1.1e-14
>prophage 105
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1420516	1421452	4188456		Staphylococcus_phage(100.0%)	1	NA	NA
WP_009902494.1|1420516_1421452_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	61.6	3.5e-45
>prophage 106
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1429545	1432352	4188456		Bacillus_phage(100.0%)	2	NA	NA
WP_003438571.1|1429545_1431279_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.9	3.2e-12
WP_003438573.1|1431518_1432352_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	29.7	1.4e-10
>prophage 107
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1437451	1438126	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_003429376.1|1437451_1438126_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	46.7	1.7e-17
>prophage 108
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1441734	1447857	4188456		Bacillus_phage(33.33%)	3	NA	NA
WP_003438599.1|1441734_1444854_+	DEAD/DEAH box helicase family protein	NA	A0A127AW80	Bacillus_phage	24.1	9.5e-31
WP_009889235.1|1444871_1445471_+	viroplasmin family protein	NA	A0A2H4JH24	uncultured_Caudovirales_phage	39.9	8.7e-34
WP_003438605.1|1445727_1447857_-	peroxiredoxin	NA	A0A2K9KZQ8	Tupanvirus	25.4	1.3e-18
>prophage 109
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1455452	1469075	4188456		Pandoravirus(30.0%)	15	NA	NA
WP_003429405.1|1455452_1456319_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	33.3	1.9e-29
WP_003438621.1|1456560_1457370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016728685.1|1457513_1458578_+	peptidase	NA	U5Q1E2	Bacillus_phage	50.8	4.2e-23
WP_003438625.1|1458605_1459325_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003438628.1|1459348_1459933_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	1.1e-57
WP_003438631.1|1459934_1461284_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	2.2e-37
WP_003438634.1|1461273_1462017_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_003438637.1|1462050_1462752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1462777_1463350_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_003438639.1|1463413_1464205_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	1.1e-23
WP_009889257.1|1464215_1464581_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_003438641.1|1464573_1465080_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	35.2	1.2e-12
WP_003419887.1|1465060_1465846_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
WP_009896376.1|1466100_1467891_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
WP_003429425.1|1467908_1469075_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 110
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1477595	1478273	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_003438655.1|1477595_1478273_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.7	1.2e-31
>prophage 111
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1482460	1485502	4188456		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_021364437.1|1482460_1485502_-	cell wall-binding protein Cwp20	NA	A0A2H4JAN9	uncultured_Caudovirales_phage	25.3	1.1e-10
>prophage 112
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1488766	1492378	4188456		Bacillus_phage(100.0%)	2	NA	NA
WP_009902522.1|1488766_1490542_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.9	5.2e-42
WP_009896403.1|1490554_1492378_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	1.7e-40
>prophage 113
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1502071	1502803	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_009893083.1|1502071_1502803_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.4	4.1e-25
>prophage 114
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1507528	1512856	4188456		Planktothrix_phage(50.0%)	4	NA	NA
WP_021364445.1|1507528_1508494_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	1.4e-33
WP_003434110.1|1508486_1509143_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003434107.1|1509178_1509970_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009902532.1|1510117_1512856_+	PAS domain-containing sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.8	5.4e-22
>prophage 115
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1518172	1525093	4188456	transposase	Synechococcus_phage(33.33%)	7	NA	NA
WP_009889336.1|1518172_1519057_+	RNA polymerase sigma factor RpoD/SigA	NA	F4YCU2	Synechococcus_phage	35.0	5.8e-34
WP_003434095.1|1519530_1519938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061364322.1|1520585_1521704_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.1	9.7e-111
WP_009896445.1|1521780_1522968_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_003439345.1|1523003_1523663_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_003427427.1|1523845_1524214_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021364450.1|1524217_1525093_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	3.2e-16
>prophage 116
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1534316	1535144	4188456		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
WP_009902544.1|1534316_1535144_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	E4WLQ5	Ostreococcus_tauri_virus	40.1	1.4e-53
>prophage 117
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1554962	1555637	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_003436744.1|1554962_1555637_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.5	3.7e-33
>prophage 118
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1558975	1559743	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_003436725.1|1558975_1559743_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	3.4e-30
>prophage 119
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1570133	1570880	4188456		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_021364459.1|1570133_1570880_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.6	3.9e-15
>prophage 120
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1578521	1578698	4188456		Clostridium_phage(100.0%)	1	NA	NA
WP_003420092.1|1578521_1578698_-	hypothetical protein	NA	A0A0A8WHZ4	Clostridium_phage	73.2	8.2e-17
>prophage 121
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1584575	1585244	4188456		Klosneuvirus(100.0%)	1	NA	NA
WP_003436669.1|1584575_1585244_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	A0A1V0SIZ6	Klosneuvirus	31.2	1.2e-18
>prophage 122
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1595948	1597637	4188456		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_021364471.1|1595948_1597637_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.5	4.2e-49
>prophage 123
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1603179	1612377	4188456		Bacillus_phage(50.0%)	7	NA	NA
WP_021364474.1|1603179_1604394_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	29.7	4.5e-05
WP_021364465.1|1604813_1605335_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_016728856.1|1605690_1606488_+	G5 domain-containing protein	NA	S6BUU4	Bacillus_phage	49.5	6.6e-13
WP_003436558.1|1606597_1607188_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_009896733.1|1607253_1608951_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	47.6	2.5e-142
WP_003436555.1|1609164_1610004_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_003436553.1|1610520_1612377_+	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	29.7	9.3e-26
>prophage 124
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1621496	1622993	4188456		Staphylococcus_phage(100.0%)	1	NA	NA
WP_021364473.1|1621496_1622993_+	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.5	6.0e-15
>prophage 125
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1628203	1632051	4188456		Streptococcus_phage(100.0%)	3	NA	NA
WP_003430007.1|1628203_1630261_+	potassium-transporting ATPase subunit KdpB	NA	E4ZFI9	Streptococcus_phage	26.1	5.5e-35
WP_021364463.1|1630279_1630906_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA	NA
WP_003436514.1|1631142_1632051_+	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	48.4	3.4e-74
>prophage 126
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1639777	1642702	4188456		Brazilian_cedratvirus(50.0%)	4	NA	NA
WP_009902652.1|1639777_1640740_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.2	3.0e-20
WP_009889503.1|1640743_1641202_-	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_003436478.1|1641557_1641914_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009893181.1|1641985_1642702_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	1.4e-17
>prophage 127
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1649688	1650483	4188456		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_003436445.1|1649688_1650483_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.2	5.6e-20
>prophage 128
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1655314	1656040	4188456		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003436372.1|1655314_1656040_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.0	8.7e-20
>prophage 129
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1663395	1680565	4188456		Bacillus_phage(25.0%)	14	NA	NA
WP_003436401.1|1663395_1664097_+	VanG-Cd-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	39.3	1.6e-42
WP_012816161.1|1664146_1665229_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	31.0	4.3e-23
WP_009896774.1|1665489_1666590_+	D-alanine--D-serine ligase VanG	NA	NA	NA	NA	NA
WP_003436406.1|1666586_1667393_+	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_021364482.1|1667410_1669549_+	serine racemase VanT catalytic subunit	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	32.2	5.3e-33
WP_003436409.1|1669862_1670483_+	TVP38/TMEM64 family protein	NA	NA	NA	NA	NA
WP_009889535.1|1670648_1671185_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_021366642.1|1671297_1671972_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	50.3	4.4e-50
WP_003436426.1|1672174_1674049_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2P1ELF7	Moumouvirus	30.1	4.7e-25
WP_021364477.1|1674140_1675577_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_003420269.1|1675905_1676484_+	TerD family protein	NA	A0A0S4KZ16	Pseudomonas_phage	36.9	2.1e-16
WP_004454531.1|1676522_1677101_+	TerD family protein	NA	NA	NA	NA	NA
WP_003430074.1|1677186_1677816_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	33.8	1.1e-26
WP_009893200.1|1677805_1680565_+	calcium-translocating P-type ATPase, PMCA-type	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	29.6	8.5e-92
>prophage 130
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1691019	1693671	4188456		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_004454520.1|1691019_1691973_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	49.4	1.5e-80
WP_009902684.1|1691962_1692919_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_021362553.1|1692915_1693671_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.1	6.5e-18
>prophage 131
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1704211	1713463	4188456	transposase	Prochlorococcus_phage(50.0%)	5	NA	NA
WP_016729476.1|1704211_1706686_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	36.3	9.1e-61
WP_021367805.1|1706685_1708143_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA	E3ST28	Prochlorococcus_phage	42.2	6.7e-88
WP_011861289.1|1708565_1710923_+	HAD-IC family P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	29.5	1.2e-38
WP_004454504.1|1711008_1711326_-	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_011861290.1|1712344_1713463_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.1	1.8e-112
>prophage 132
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1719335	1719887	4188456		Thermoanaerobacterium_phage(100.0%)	1	NA	NA
WP_004454500.1|1719335_1719887_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	50.9	7.1e-06
>prophage 133
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1726974	1730885	4188456		Staphylococcus_phage(33.33%)	4	NA	NA
WP_021364489.1|1726974_1727862_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.3	2.9e-25
WP_021360568.1|1727867_1728641_+	ABC-2 transporter family protein	NA	NA	NA	NA	NA
WP_021364494.1|1728752_1729478_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.8	1.2e-34
WP_009896818.1|1729481_1730885_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	24.2	2.8e-14
>prophage 134
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1742877	1746133	4188456		Bacillus_phage(33.33%)	4	NA	NA
WP_009889581.1|1742877_1743549_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	3.5e-23
WP_004454470.1|1743538_1744771_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_003420374.1|1744920_1745238_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	41.4	3.3e-16
WP_003430157.1|1745254_1746133_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A249XZT7	Enterococcus_phage	27.8	1.2e-18
>prophage 135
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1758221	1761815	4188456		Staphylococcus_phage(75.0%)	4	NA	NA
WP_021360573.1|1758221_1758683_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	61.8	3.3e-49
WP_009889591.1|1758787_1759981_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	57.0	2.1e-119
WP_009889593.1|1760003_1760669_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	40.3	1.6e-36
WP_009896839.1|1760702_1761815_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	40.0	2.8e-54
>prophage 136
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1782271	1783390	4188456	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_061364323.1|1782271_1783390_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	3.0e-112
>prophage 137
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1807630	1808362	4188456		Clostridioides_phage(100.0%)	1	NA	NA
WP_004454401.1|1807630_1808362_+	response regulator transcription factor	NA	A0A2R2ZGH8	Clostridioides_phage	26.7	2.9e-15
>prophage 138
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1816873	1823743	4188456	protease	Clostridium_phage(25.0%)	8	NA	NA
WP_004454387.1|1816873_1819261_+|protease	cell wall-binding cysteine protease Cwp13	protease	A0A0A8WJG0	Clostridium_phage	35.5	2.2e-27
WP_003430242.1|1819491_1819725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454386.1|1820013_1820604_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004454385.1|1820717_1821563_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.2	1.5e-23
WP_004454384.1|1821559_1822243_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004454383.1|1822239_1822956_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003423694.1|1823052_1823316_+	helix-turn-helix transcriptional regulator	NA	B3RH39	Bacillus_virus	41.9	3.7e-05
WP_004454382.1|1823287_1823743_+	peptide deformylase	NA	A0A142EZU8	Stenotrophomonas_phage	35.3	3.9e-10
>prophage 139
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1840505	1847394	4188456		Tupanvirus(25.0%)	8	NA	NA
WP_003439552.1|1840505_1841000_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A2K9L300	Tupanvirus	38.4	2.6e-23
WP_003430265.1|1841115_1841493_+	monooxygenase	NA	NA	NA	NA	NA
WP_009893285.1|1841698_1842139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021364510.1|1842797_1844105_+	hypothetical protein	NA	O64084	Bacillus_phage	29.2	9.1e-44
WP_003439548.1|1844578_1845382_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003430270.1|1845419_1846031_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003423753.1|1846062_1846734_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.4	1.0e-30
WP_003433620.1|1847031_1847394_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	53.2	3.5e-22
>prophage 140
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1853075	1854509	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_003430278.1|1853075_1854509_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	32.1	1.1e-34
>prophage 141
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1860838	1861813	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_003439509.1|1860838_1861813_-	exonuclease domain-containing protein	NA	G3MBN3	Bacillus_virus	31.4	2.6e-11
>prophage 142
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1869186	1874721	4188456		Pseudomonas_phage(25.0%)	5	NA	NA
WP_003430302.1|1869186_1869768_-	TerD family protein	NA	W8EDB4	Pseudomonas_phage	33.3	5.2e-15
WP_003439494.1|1869807_1870374_-	TerD family protein	NA	K4JRX3	Caulobacter_phage	30.9	5.5e-22
WP_003430304.1|1870849_1871710_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	36.2	1.6e-41
WP_003439490.1|1871858_1872749_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_022620479.1|1872966_1874721_+	cell wall-binding protein Cwp23	NA	A0A2R2ZGK6	Clostridioides_phage	41.8	8.7e-66
>prophage 143
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1882711	1884279	4188456		Clostridium_virus(50.0%)	2	NA	NA
WP_003430316.1|1882711_1883089_+	BlaI/MecI/CopY family transcriptional regulator	NA	A3QSD4	Clostridium_virus	58.7	1.2e-33
WP_003439467.1|1883619_1884279_+	hypothetical protein	NA	X5JAC0	Clostridium_phage	50.5	8.9e-48
>prophage 144
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1892322	1893441	4188456	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_032542075.1|1892322_1893441_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	52.7	1.4e-109
>prophage 145
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1896775	1899433	4188456		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_021364518.1|1896775_1899433_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	31.7	1.4e-91
>prophage 146
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1902845	1914519	4188456	protease	Micromonas_pusilla_virus(25.0%)	9	NA	NA
WP_003428619.1|1902845_1904663_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	47.8	2.7e-102
WP_009897026.1|1904840_1907543_+	sensor histidine kinase KdpD	NA	A0A1V0SGX0	Hokovirus	29.6	2.6e-16
WP_021364519.1|1907576_1908275_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003428624.1|1908631_1909588_+	CorA family divalent cation transporter	NA	NA	NA	NA	NA
WP_003428626.1|1909764_1909920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003439427.1|1910049_1911063_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	29.4	7.9e-19
WP_009893310.1|1911084_1912149_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_009897028.1|1912148_1913462_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_003439421.1|1913439_1914519_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	38.0	1.0e-56
>prophage 147
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1919760	1923198	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_011861349.1|1919760_1923198_+	PAS domain-containing protein	NA	G3MA91	Bacillus_virus	34.6	1.6e-18
>prophage 148
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1931543	1932278	4188456		Streptococcus_phage(100.0%)	1	NA	NA
WP_021364530.1|1931543_1932278_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	62.7	4.4e-88
>prophage 149
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1935490	1938186	4188456		Clostridium_phage(33.33%)	3	NA	NA
WP_003435466.1|1935490_1936279_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WE15	Clostridium_phage	62.3	1.9e-89
WP_009897045.1|1936417_1936855_-	cytidine/deoxycytidylate deaminase family protein	NA	A7KUY9	Bacillus_phage	54.3	5.9e-32
WP_009897047.1|1937676_1938186_+	helix-turn-helix domain-containing protein	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	43.8	1.0e-06
>prophage 150
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1943447	1951889	4188456		Streptococcus_phage(33.33%)	6	NA	NA
WP_021364526.1|1943447_1944359_+	helix-turn-helix domain-containing protein	NA	A0A1B0RXG1	Streptococcus_phage	30.6	3.0e-09
WP_003437417.1|1944436_1944871_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_021370669.1|1946657_1948454_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	29.4	4.2e-31
WP_021364547.1|1949423_1950281_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_009902354.1|1950358_1950940_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003434331.1|1951043_1951889_+	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	29.9	8.0e-17
>prophage 151
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1957678	1969632	4188456	integrase	Streptococcus_phage(42.86%)	14	1957982:1957996	1966425:1966439
WP_006354941.1|1957678_1958098_+	RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	41.6	8.8e-25
1957982:1957996	attL	TTGGAAATGAGTGAT	NA	NA	NA	NA
WP_021360132.1|1958100_1958355_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_022582750.1|1958729_1958933_+	hypothetical protein	NA	A0A1S5SF07	Streptococcus_phage	77.6	2.1e-24
WP_021364540.1|1959010_1960201_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	65.7	1.9e-152
WP_003435446.1|1960457_1961258_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_009905620.1|1961247_1962000_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.3	3.1e-28
WP_011861393.1|1962169_1963528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003435381.1|1963520_1964153_+	OmpA family protein	NA	NA	NA	NA	NA
WP_021364535.1|1964481_1965639_+	MBL fold metallo-hydrolase	NA	Q332C0	Clostridium_botulinum_C_phage	42.2	1.3e-54
WP_009897067.1|1965785_1966421_-	transcriptional repressor LexA	NA	A0A0N9RTK0	Paenibacillus_phage	43.3	2.8e-14
WP_003435347.1|1966524_1967652_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
1966425:1966439	attR	ATCACTCATTTCCAA	NA	NA	NA	NA
WP_003435340.1|1967972_1968818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003435338.1|1968847_1969219_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_003428736.1|1969371_1969632_-	stage V sporulation protein S	NA	J9PTX7	Bacillus_phage	43.4	2.9e-10
>prophage 152
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1979196	1985350	4188456		Planktothrix_phage(33.33%)	4	NA	NA
WP_009897077.1|1979196_1979883_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.4	5.5e-32
WP_021364536.1|1979897_1982375_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_021377440.1|1982593_1983997_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.1	8.9e-21
WP_003435320.1|1984489_1985350_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	32.5	3.0e-35
>prophage 153
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1991286	1991973	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_021359307.1|1991286_1991973_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	7.9e-31
>prophage 154
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	1995790	1997569	4188456		Bacillus_phage(50.0%)	2	NA	NA
WP_021364549.1|1995790_1996822_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	24.5	6.8e-18
WP_021363598.1|1996903_1997569_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.0	1.1e-34
>prophage 155
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2013486	2019203	4188456		Wolbachia_phage(33.33%)	3	NA	NA
WP_003435267.1|2013486_2015454_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.1	2.8e-73
WP_003435264.1|2015464_2018308_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	27.5	4.5e-64
WP_003435263.1|2018468_2019203_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.9	3.3e-11
>prophage 156
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2027618	2029079	4188456		Clostridioides_phage(100.0%)	1	NA	NA
WP_021364554.1|2027618_2029079_-	cell wall-binding protein Cwp28	NA	A0A2R2ZGK6	Clostridioides_phage	45.5	3.8e-67
>prophage 157
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2034237	2035371	4188456	integrase	Lactococcus_phage(50.0%)	3	2026966:2026982	2035705:2035721
2026966:2026982	attL	CATGTTTATATTTTTTT	NA	NA	NA	NA
WP_003431034.1|2034237_2034438_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	68.3	5.0e-18
WP_021361891.1|2034601_2034814_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021361892.1|2035188_2035371_+|integrase	integrase	integrase	A0A090EUH1	Clostridium_phage	81.1	5.5e-16
2035705:2035721	attR	AAAAAAATATAAACATG	NA	NA	NA	NA
>prophage 158
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2046818	2047757	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_009889978.1|2046818_2047757_-	S8 family peptidase	NA	A0A127AWU5	Bacillus_phage	45.3	2.9e-60
>prophage 159
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2053409	2054587	4188456		Clostridium_phage(100.0%)	2	NA	NA
WP_003435199.1|2053409_2053667_-	hypothetical protein	NA	J9QD22	Clostridium_phage	56.6	2.2e-18
WP_003428913.1|2054215_2054587_+	helix-turn-helix transcriptional regulator	NA	A0A090D830	Clostridium_phage	39.1	4.3e-15
>prophage 160
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2058048	2063298	4188456		Cronobacter_phage(50.0%)	5	NA	NA
WP_003435194.1|2058048_2060643_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	36.4	9.1e-128
WP_003435191.1|2060679_2061276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003424231.1|2061292_2061697_-	replication/maintenance protein RepL	NA	NA	NA	NA	NA
WP_003424232.1|2062063_2062438_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009897173.1|2062443_2063298_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.3	1.7e-22
>prophage 161
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2069203	2070391	4188456		Klosneuvirus(100.0%)	1	NA	NA
WP_021364563.1|2069203_2070391_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.8	7.3e-32
>prophage 162
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2080173	2081585	4188456		Clostridium_phage(50.0%)	2	NA	NA
WP_009897202.1|2080173_2080458_-	hypothetical protein	NA	Q24LG2	Clostridium_phage	60.2	2.8e-22
WP_021359347.1|2080904_2081585_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	26.9	4.9e-17
>prophage 163
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2095255	2096920	4188456	tRNA	Escherichia_phage(100.0%)	1	NA	NA
WP_003428989.1|2095255_2096920_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	54.4	1.5e-171
>prophage 164
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2100023	2110165	4188456	integrase,transposase	Clostridioides_phage(60.0%)	10	2097004:2097020	2119082:2119098
2097004:2097020	attL	TCTTCATCATTTACTTT	NA	NA	NA	NA
WP_003424324.1|2100023_2100599_-	hypothetical protein	NA	A0A2R2ZGQ3	Clostridioides_phage	57.5	5.4e-49
WP_021364571.1|2100914_2101178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428999.1|2101614_2101992_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A2R2ZGM0	Clostridioides_phage	63.9	4.2e-26
WP_009893419.1|2102332_2103445_+|integrase	site-specific integrase	integrase	A0A2R2ZGM9	Clostridioides_phage	77.0	2.7e-161
WP_021364569.1|2103652_2104129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003429004.1|2104327_2105953_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	25.0	9.3e-46
WP_003435117.1|2106290_2107310_-	molybdopterin-binding protein	NA	NA	NA	NA	NA
WP_009890188.1|2107306_2107876_-	molybdenum cofactor cytidylyltransferase	NA	NA	NA	NA	NA
WP_021364568.1|2107982_2108705_-	putative selenium-dependent hydroxylase accessory protein YqeC	NA	NA	NA	NA	NA
WP_009897221.1|2108887_2110165_-|transposase	transposase	transposase	G3MB42	Bacillus_virus	35.0	2.8e-53
2119082:2119098	attR	TCTTCATCATTTACTTT	NA	NA	NA	NA
>prophage 165
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2132304	2132775	4188456		Acinetobacter_phage(100.0%)	1	NA	NA
WP_003434079.1|2132304_2132775_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	35.9	4.8e-19
>prophage 166
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2140267	2144545	4188456		Acidithiobacillus_phage(50.0%)	3	NA	NA
WP_021364579.1|2140267_2142202_-	AAA family ATPase	NA	K4I1H4	Acidithiobacillus_phage	31.7	3.1e-32
WP_003434069.1|2142230_2142953_-	cell division protein	NA	NA	NA	NA	NA
WP_003434065.1|2144044_2144545_-	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	35.6	1.1e-13
>prophage 167
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2147549	2147999	4188456		Acinetobacter_phage(100.0%)	1	NA	NA
WP_003434060.1|2147549_2147999_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	30.9	4.1e-12
>prophage 168
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2153727	2157323	4188456		Staphylococcus_phage(33.33%)	3	NA	NA
WP_003434049.1|2153727_2154435_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.1	1.8e-22
WP_011861454.1|2154687_2155833_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.7	5.7e-42
WP_009897252.1|2155946_2157323_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	34.6	8.7e-53
>prophage 169
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2160708	2161383	4188456		Synechococcus_phage(100.0%)	1	NA	NA
WP_003430626.1|2160708_2161383_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	37.3	5.8e-34
>prophage 170
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2164592	2171827	4188456		Bacillus_phage(25.0%)	6	NA	NA
WP_003424455.1|2164592_2165261_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.1	1.7e-41
WP_009903015.1|2165420_2167922_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.4	4.0e-104
WP_003424459.1|2168212_2168404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003424461.1|2168551_2168794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003430621.1|2169005_2170829_+	translational GTPase TypA	NA	A0A1S5SF82	Streptococcus_phage	28.5	2.3e-24
WP_003434033.1|2170918_2171827_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	38.2	4.1e-59
>prophage 171
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2189467	2189671	4188456		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_021364587.1|2189467_2189671_-	helix-turn-helix domain-containing protein	NA	A0A2K5B261	Erysipelothrix_phage	43.5	9.5e-09
>prophage 172
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2194103	2194838	4188456		Flavobacterium_phage(100.0%)	1	NA	NA
WP_003424529.1|2194103_2194838_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	48.5	3.0e-28
>prophage 173
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2198354	2209572	4188456		Erythrobacter_phage(20.0%)	9	NA	NA
WP_021364589.1|2198354_2199539_-	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	30.2	2.8e-07
WP_003433992.1|2199642_2200701_-	potassium channel family protein	NA	NA	NA	NA	NA
WP_011861468.1|2200914_2201559_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003433989.1|2201746_2202370_+	sporulation membrane protein YtaF	NA	NA	NA	NA	NA
WP_009897292.1|2202432_2204343_-	mannonate oxidoreductase	NA	F2Y0V3	Organic_Lake_phycodnavirus	27.8	1.9e-18
WP_021364590.1|2204876_2205944_-	RNA ligase RtcB family protein	NA	A0A0K2CNT0	Brevibacillus_phage	25.8	9.1e-26
WP_003433984.1|2206189_2207185_-	protein kinase	NA	A0A285PXS3	Cedratvirus	21.8	6.8e-07
WP_003433982.1|2207443_2208703_-	VanW family protein	NA	NA	NA	NA	NA
WP_021364591.1|2208942_2209572_-	endonuclease/exonuclease/phosphatase family protein	NA	A0A1V0SL41	Klosneuvirus	28.8	2.4e-10
>prophage 174
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2217885	2219205	4188456		Klosneuvirus(100.0%)	1	NA	NA
WP_003430579.1|2217885_2219205_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	A0A1V0SKB7	Klosneuvirus	24.4	5.2e-23
>prophage 175
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2225559	2228825	4188456		Clostridium_phage(50.0%)	3	NA	NA
WP_009897312.1|2225559_2226690_-	helix-turn-helix domain-containing protein	NA	A0A0A7RTT7	Clostridium_phage	41.0	2.1e-73
WP_021364593.1|2226842_2227796_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_009903063.1|2227919_2228825_-	patatin-like phospholipase family protein	NA	J2YBI2	Acanthamoeba_polyphaga_lentillevirus	34.6	4.4e-05
>prophage 176
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2234468	2235218	4188456		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_003433939.1|2234468_2235218_-	amino acid ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.3	9.6e-14
>prophage 177
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2240697	2253296	4188456		Clostridium_phage(40.0%)	9	NA	NA
WP_021378502.1|2240697_2242875_-	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	26.5	3.8e-34
WP_021364601.1|2243155_2246335_+	DEAD/DEAH box helicase	NA	E5EQH3	Micromonas_sp._RCC1109_virus	29.7	1.2e-41
WP_009890358.1|2246619_2247384_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_009903070.1|2247539_2247773_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021364599.1|2247846_2249340_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.0	1.8e-48
WP_003433910.1|2249667_2250210_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WFX1	Clostridium_phage	58.1	3.0e-57
WP_021364607.1|2250499_2251447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011861486.1|2251474_2251966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003433903.1|2252402_2253296_-	glucosaminidase domain-containing protein	NA	A0A0A7RUS8	Clostridium_phage	48.1	1.2e-31
>prophage 178
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2260255	2261698	4188456		Clostridioides_phage(100.0%)	1	NA	NA
WP_003433893.1|2260255_2261698_-	cell wall-binding repeat-containing protein	NA	A0A2R2ZGK6	Clostridioides_phage	49.4	9.7e-71
>prophage 179
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2269282	2270386	4188456		Pacmanvirus(100.0%)	1	NA	NA
WP_009897361.1|2269282_2270386_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.9	3.4e-23
>prophage 180
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2281917	2292162	4188456	integrase	Bacillus_phage(50.0%)	9	2270364:2270378	2295141:2295155
2270364:2270378	attL	TTTCTCAATAATTTT	NA	NA	NA	NA
WP_021364604.1|2281917_2283750_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	3.6e-46
WP_003433859.1|2283742_2285989_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.4	6.0e-43
WP_003433857.1|2286056_2286518_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003423380.1|2286822_2287389_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_003423377.1|2288075_2288414_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WIP7	Clostridium_phage	54.6	8.7e-23
WP_009890395.1|2288435_2288753_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003433851.1|2288902_2289580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009897376.1|2289907_2290675_-	type I 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_021364612.1|2291346_2292162_-|integrase	phage integrase family protein	integrase	A0A1S5SEW7	Streptococcus_phage	62.4	2.4e-95
2295141:2295155	attR	AAAATTATTGAGAAA	NA	NA	NA	NA
>prophage 181
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2296668	2299036	4188456	integrase	Streptococcus_phage(75.0%)	5	2291818:2291833	2305779:2305794
2291818:2291833	attL	TTTCATATCCAATTCT	NA	NA	NA	NA
WP_009897392.1|2296668_2297076_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	27.5	1.0e-09
WP_009897394.1|2297077_2297308_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_016729089.1|2297697_2297901_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	77.6	2.8e-24
WP_021360730.1|2297978_2298332_+|integrase	integrase DNA-binding domain-containing protein	integrase	A0A1S5SEW7	Streptococcus_phage	67.8	8.4e-37
WP_003433837.1|2298403_2299036_+	CatB-related O-acetyltransferase	NA	A0A2R8FE91	Brazilian_cedratvirus	42.2	7.8e-25
2305779:2305794	attR	TTTCATATCCAATTCT	NA	NA	NA	NA
>prophage 182
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2311157	2331516	4188456		Streptococcus_phage(85.71%)	21	NA	NA
WP_010776653.1|2311157_2311484_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	71.6	1.2e-37
WP_010776654.1|2311498_2311882_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	63.8	2.4e-37
WP_010776655.1|2311979_2312465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021367531.1|2312581_2313976_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.5	8.2e-176
WP_071608763.1|2314177_2315377_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.5e-141
WP_021364856.1|2315384_2315519_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_021364854.1|2316260_2318171_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_003436839.1|2318337_2318499_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.0	4.4e-17
WP_003437218.1|2318583_2319186_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_022620436.1|2319282_2319579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021364852.1|2319497_2320001_+	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_021362179.1|2320003_2320507_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.8	1.3e-54
WP_022620433.1|2320624_2321014_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.2	2.6e-47
WP_021377542.1|2321000_2323451_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.2	0.0e+00
WP_021381636.1|2323450_2325643_+	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.5e-176
WP_021370669.1|2327192_2328989_+	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	29.4	4.2e-31
WP_021381632.1|2329233_2330139_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	67.1	2.3e-110
WP_021364921.1|2330227_2330524_+	DUF2089 family protein	NA	NA	NA	NA	NA
WP_021364922.1|2330526_2330814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022620516.1|2330852_2331038_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	66.1	1.1e-16
WP_021367445.1|2331156_2331516_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	43.2	9.5e-20
>prophage 183
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2334984	2342293	4188456	integrase	Streptococcus_phage(83.33%)	10	2333856:2333870	2348424:2348438
2333856:2333870	attL	TTTATCTATTTTATT	NA	NA	NA	NA
WP_022620514.1|2334984_2335173_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	59.6	1.4e-14
WP_021367896.1|2335291_2335651_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	44.1	1.5e-20
WP_021364210.1|2336071_2336491_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	37.2	1.0e-20
WP_021364212.1|2336494_2336743_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004613735.1|2337124_2337328_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	2.5e-25
WP_021367898.1|2337405_2338596_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.0	4.7e-156
WP_003433829.1|2338925_2339615_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003423346.1|2339677_2340526_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021362704.1|2340544_2341432_-	ROK family protein	NA	NA	NA	NA	NA
WP_003433827.1|2341489_2342293_-	hypothetical protein	NA	A0A2I7QV58	Vibrio_phage	23.6	9.3e-07
2348424:2348438	attR	TTTATCTATTTTATT	NA	NA	NA	NA
>prophage 184
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2350107	2357532	4188456	tRNA	Moumouvirus(50.0%)	4	NA	NA
WP_003430444.1|2350107_2351505_-|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	39.8	4.9e-88
WP_009890435.1|2351983_2352178_-	DUF3787 domain-containing protein	NA	NA	NA	NA	NA
WP_003433821.1|2352450_2354124_-	S8 family peptidase	NA	NA	NA	NA	NA
WP_003433820.1|2354133_2357532_-	S8 family serine peptidase	NA	A0A127AWU5	Bacillus_phage	32.3	2.6e-05
>prophage 185
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2363564	2364947	4188456		Streptococcus_phage(100.0%)	1	NA	NA
WP_003440226.1|2363564_2364947_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.2	2.1e-14
>prophage 186
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2371970	2375408	4188456		Acinetobacter_phage(100.0%)	2	NA	NA
WP_009897431.1|2371970_2373764_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	39.4	1.1e-127
WP_003430410.1|2374016_2375408_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.4	1.7e-56
>prophage 187
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2391088	2393209	4188456		Indivirus(100.0%)	1	NA	NA
WP_021364630.1|2391088_2393209_-	DNA topoisomerase III	NA	A0A1V0SCS0	Indivirus	27.0	8.2e-26
>prophage 188
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2396904	2397963	4188456		Tupanvirus(100.0%)	1	NA	NA
WP_021364622.1|2396904_2397963_-	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	29.0	4.1e-18
>prophage 189
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2407932	2411867	4188456		Bacillus_phage(66.67%)	3	NA	NA
WP_021362720.1|2407932_2409993_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	25.2	8.2e-15
WP_004454566.1|2410188_2410881_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.6	3.1e-35
WP_004454568.1|2411492_2411867_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	95.2	4.6e-57
>prophage 190
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2415706	2421250	4188456		Clostridium_phage(100.0%)	6	NA	NA
WP_009897477.1|2415706_2415859_-	hypothetical protein	NA	X5JAJ2	Clostridium_phage	59.2	1.6e-05
WP_021364626.1|2416997_2417921_-	SHOCT domain-containing protein	NA	NA	NA	NA	NA
WP_004454589.1|2418114_2418267_-	hypothetical protein	NA	J9QED5	Clostridium_phage	52.0	9.6e-06
WP_021364628.1|2418540_2418864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454592.1|2418899_2419154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021364350.1|2420872_2421250_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WJU1	Clostridium_phage	88.8	3.4e-52
>prophage 191
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2424287	2440152	4188456		Bacillus_phage(25.0%)	17	NA	NA
WP_004454608.1|2424287_2424488_+	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	45.8	3.7e-05
WP_009890506.1|2424810_2424987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003423148.1|2425211_2425412_+	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	71.4	2.0e-19
WP_004454609.1|2426046_2426859_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009897495.1|2426868_2427660_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_009893573.1|2427661_2428357_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	32.3	5.2e-22
WP_009897498.1|2428343_2429075_+	membrane protein	NA	NA	NA	NA	NA
WP_004454616.1|2429388_2430189_+	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_004454617.1|2430727_2431444_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.9	2.1e-34
WP_021364639.1|2431412_2433002_+	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	23.5	1.1e-11
WP_009897501.1|2433313_2434816_-	phosphoglucomutase	NA	NA	NA	NA	NA
WP_003430699.1|2434925_2435591_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003430700.1|2435620_2436067_-	ribose 5-phosphate isomerase B	NA	A0A222YX14	Synechococcus_phage	31.7	3.3e-14
WP_021364636.1|2436241_2437162_-	transketolase family protein	NA	NA	NA	NA	NA
WP_021363679.1|2437164_2437977_-	transketolase	NA	NA	NA	NA	NA
WP_009903141.1|2438068_2439100_-	zinc-binding dehydrogenase	NA	K7Z7U2	Megavirus	28.1	1.4e-15
WP_009903144.1|2439099_2440152_-	galactitol-1-phosphate 5-dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	25.2	4.8e-11
>prophage 192
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2446061	2446712	4188456		Synechococcus_phage(100.0%)	1	NA	NA
WP_021364638.1|2446061_2446712_-	fructose-6-phosphate aldolase	NA	R9TM64	Synechococcus_phage	51.4	1.2e-49
>prophage 193
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2453543	2456351	4188456	transposase	Klosneuvirus(50.0%)	3	NA	NA
WP_003430726.1|2453543_2455043_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	33.4	4.8e-57
WP_021364634.1|2455179_2455497_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_104686356.1|2455454_2456351_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	37.7	1.2e-39
>prophage 194
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2478298	2479246	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_003416869.1|2478298_2479246_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	43.7	1.3e-63
>prophage 195
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2484058	2484811	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_003430772.1|2484058_2484811_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.2	9.3e-33
>prophage 196
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2512091	2514229	4188456	protease	Erwinia_phage(50.0%)	3	NA	NA
WP_004454685.1|2512091_2512694_-	peptidoglycan-binding protein	NA	A0A2P1JUA1	Erwinia_phage	44.1	1.7e-08
WP_011861541.1|2512710_2513859_-|protease	protease	protease	NA	NA	NA	NA
WP_003430818.1|2513851_2514229_-	BlaI/MecI/CopY family transcriptional regulator	NA	A0A0A8WFF9	Clostridium_phage	53.2	1.6e-30
>prophage 197
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2517842	2518349	4188456		Clostridium_phage(100.0%)	1	NA	NA
WP_004454691.1|2517842_2518349_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	41.2	2.9e-22
>prophage 198
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2521541	2538120	4188456	coat,tRNA	Escherichia_phage(16.67%)	13	NA	NA
WP_003416734.1|2521541_2522402_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.8	9.9e-31
WP_003416732.1|2522670_2522880_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_004454698.1|2522879_2523146_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003416728.1|2523174_2523747_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_021364648.1|2523981_2525172_-	C40 family peptidase	NA	A0A0K2SUC1	Clostridium_phage	44.8	1.7e-28
WP_004454700.1|2525431_2525863_-	dUTP diphosphatase	NA	A0A1L2BX65	Bacteriophage	51.0	4.6e-37
WP_004454701.1|2525975_2528204_+	type IA DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	29.0	1.1e-28
WP_004454702.1|2528314_2528800_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009897600.1|2529051_2530275_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_021392999.1|2530278_2533413_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	26.9	3.2e-111
WP_021367919.1|2533446_2534745_+	TolC family protein	NA	NA	NA	NA	NA
WP_009890610.1|2535033_2535279_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_009890612.1|2535492_2538120_-	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	41.0	4.3e-93
>prophage 199
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2571104	2572220	4188456		Pseudomonas_phage(100.0%)	1	NA	NA
WP_003430896.1|2571104_2572220_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	42.6	1.0e-48
>prophage 200
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2575327	2575771	4188456		Xanthomonas_phage(100.0%)	1	NA	NA
WP_003430905.1|2575327_2575771_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	44.2	3.0e-23
>prophage 201
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2580001	2582410	4188456		Clostridioides_phage(100.0%)	1	NA	NA
WP_011861556.1|2580001_2582410_-	CRISPR-associated helicase/endonuclease Cas3	NA	A0A2R2ZGW0	Clostridioides_phage	75.8	0.0e+00
>prophage 202
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2587213	2595830	4188456		Mycoplasma_phage(25.0%)	6	NA	NA
WP_004454747.1|2587213_2588323_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.8	4.9e-22
WP_009903207.1|2588352_2589120_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_009903209.1|2589307_2590681_-	MFS transporter	NA	S4TR35	Salmonella_phage	22.0	2.5e-07
WP_021364652.1|2590716_2591652_-	ROK family protein	NA	NA	NA	NA	NA
WP_004454751.1|2592617_2593772_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	30.6	5.1e-30
WP_021364649.1|2593982_2595830_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	52.5	1.8e-130
>prophage 203
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2600586	2603878	4188456	tRNA	unidentified_phage(50.0%)	2	NA	NA
WP_016728782.1|2600586_2601924_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	45.8	2.5e-97
WP_004454760.1|2602072_2603878_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	26.4	2.6e-25
>prophage 204
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2613852	2621815	4188456	tRNA	Clostridium_botulinum_C_phage(25.0%)	8	NA	NA
WP_021364653.1|2613852_2614689_+	MBL fold metallo-hydrolase	NA	Q332C0	Clostridium_botulinum_C_phage	39.3	9.9e-44
WP_004454770.1|2614830_2615538_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_021364658.1|2616032_2616872_-	G5 domain-containing protein	NA	L0LBX4	Bacillus_phage	44.1	7.7e-12
WP_003416528.1|2617120_2617795_-	uracil-DNA glycosylase	NA	S4VYQ4	Pandoravirus	45.3	5.2e-51
WP_004454772.1|2617831_2618203_-	NusG domain II-containing protein	NA	NA	NA	NA	NA
WP_004454773.1|2618269_2619328_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_004454774.1|2619518_2620697_-	putative C-S lyase	NA	NA	NA	NA	NA
WP_004454775.1|2620750_2621815_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	23.6	5.5e-15
>prophage 205
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2628626	2633353	4188456		Hokovirus(50.0%)	2	NA	NA
WP_021360820.1|2628626_2631365_-	sporulation-associated two-component system sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	27.2	2.1e-26
WP_004454786.1|2631469_2633353_-	selenocysteine-specific translation elongation factor	NA	A0A2K9KZ60	Tupanvirus	30.3	3.1e-21
>prophage 206
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2641696	2645497	4188456		Faustovirus(50.0%)	2	NA	NA
WP_021364654.1|2641696_2642800_+	histidinol-phosphate aminotransferase family protein	NA	A0A142C026	Faustovirus	25.4	8.3e-14
WP_009893623.1|2642857_2645497_-	cation-translocating P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	31.6	1.7e-97
>prophage 207
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2662248	2671785	4188456	integrase,tRNA	Clostridium_phage(40.0%)	8	2660636:2660652	2665472:2665488
2660636:2660652	attL	TGTCAGTTAAATGTCAG	NA	NA	NA	NA
WP_004454815.1|2662248_2662407_-	hypothetical protein	NA	J9QED5	Clostridium_phage	65.4	1.3e-08
WP_009897709.1|2662765_2664136_-	cell wall-binding protein Cwp29	NA	A0A2R2ZGK6	Clostridioides_phage	44.0	2.0e-70
WP_004454820.1|2665187_2665460_+|integrase	tyrosine-type recombinase/integrase	integrase	X5JB41	Clostridium_phage	78.9	6.1e-27
WP_009897711.1|2665777_2666446_-	VanZ family protein	NA	NA	NA	NA	NA
2665472:2665488	attR	TGTCAGTTAAATGTCAG	NA	NA	NA	NA
WP_003416419.1|2667281_2669702_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	48.6	7.0e-215
WP_003416416.1|2670055_2670406_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003431048.1|2670522_2671095_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	NA	NA	NA	NA	NA
WP_003416411.1|2671095_2671785_-	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	30.0	9.1e-19
>prophage 208
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2680633	2682744	4188456		Planktothrix_phage(50.0%)	2	NA	NA
WP_004454838.1|2680633_2681317_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.3e-37
WP_004454840.1|2681433_2682744_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	25.3	5.8e-14
>prophage 209
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2692314	2693733	4188456		Pseudomonas_phage(100.0%)	1	NA	NA
WP_022620487.1|2692314_2693733_-	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	34.1	3.6e-54
>prophage 210
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2705822	2706941	4188456	transposase	Geobacillus_virus(100.0%)	1	NA	NA
WP_061364326.1|2705822_2706941_-|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	53.5	4.8e-110
>prophage 211
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2710914	2711412	4188456		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_003416314.1|2710914_2711412_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	40.1	2.0e-23
>prophage 212
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2726066	2729091	4188456		Bacillus_phage(100.0%)	2	NA	NA
WP_021364669.1|2726066_2728400_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.5	6.2e-19
WP_003431132.1|2728374_2729091_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.2	2.6e-32
>prophage 213
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2733284	2736145	4188456		Bacillus_phage(50.0%)	2	NA	NA
WP_009897780.1|2733284_2734022_-	SDR family oxidoreductase	NA	A0A127AWG8	Bacillus_phage	26.7	8.0e-05
WP_004454897.1|2734129_2736145_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A2H4UVE2	Bodo_saltans_virus	30.1	9.2e-27
>prophage 214
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2740891	2747148	4188456	tRNA	Prochlorococcus_phage(25.0%)	6	NA	NA
WP_003431156.1|2740891_2741821_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.9	8.8e-09
WP_003431159.1|2741835_2742276_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	47.1	7.6e-19
WP_004454900.1|2742293_2744819_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_004454901.1|2745057_2746257_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	33.2	9.2e-51
WP_003431167.1|2746261_2746528_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003431170.1|2746530_2747148_-	guanylate kinase	NA	U5J9X2	Bacillus_phage	38.3	1.1e-18
>prophage 215
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2752499	2755662	4188456		Streptococcus_phage(50.0%)	2	NA	NA
WP_021364671.1|2752499_2754152_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	35.3	9.7e-67
WP_009897793.1|2754450_2755662_-	ABC transporter permease	NA	Q9KX94	Enterobacteria_phage	34.2	1.3e-55
>prophage 216
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2762434	2765249	4188456		Enterobacteria_phage(50.0%)	2	NA	NA
WP_004454923.1|2762434_2763637_-	histidine kinase	NA	Q9EYF3	Enterobacteria_phage	36.9	3.2e-19
WP_004454924.1|2764502_2765249_+	LytTR family response regulator CdtR	NA	A0A1V0E029	Clostridioides_phage	57.5	3.8e-79
>prophage 217
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2773563	2779990	4188456	tRNA	Streptococcus_phage(50.0%)	5	NA	NA
WP_021364672.1|2773563_2774406_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	27.5	9.7e-23
WP_004454936.1|2774589_2775162_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009890831.1|2775324_2775597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003426922.1|2775723_2776596_-	YitT family protein	NA	NA	NA	NA	NA
WP_004454939.1|2776882_2779990_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	32.4	2.3e-162
>prophage 218
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2803567	2808788	4188456		Bacillus_phage(75.0%)	7	NA	NA
WP_003426968.1|2803567_2804857_-	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	37.7	3.4e-35
WP_003416112.1|2804885_2805578_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.0	5.3e-43
WP_011861621.1|2805592_2806354_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_004454958.1|2806350_2806812_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003416105.1|2806833_2807097_-	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_003416101.1|2807200_2807974_-	RNA polymerase sporulation sigma factor SigG	NA	A0A0A0RV91	Bacillus_phage	41.0	1.6e-43
WP_003416098.1|2808065_2808788_-	RNA polymerase sporulation sigma factor SigE	NA	A0A2H4JC68	uncultured_Caudovirales_phage	43.5	4.0e-17
>prophage 219
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2827019	2829586	4188456		Bacillus_virus(50.0%)	2	NA	NA
WP_021362818.1|2827019_2828306_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	26.7	3.9e-23
WP_021364682.1|2828320_2829586_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	27.5	1.2e-35
>prophage 220
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2842399	2844349	4188456		Bacillus_virus(50.0%)	2	NA	NA
WP_021364689.1|2842399_2843371_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.3	9.5e-14
WP_004454983.1|2843371_2844349_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.9	1.6e-16
>prophage 221
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2854760	2855657	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_021367974.1|2854760_2855657_+	hypothetical protein	NA	U5Q0C0	Bacillus_phage	62.4	2.3e-38
>prophage 222
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2864731	2872706	4188456	integrase	Streptococcus_phage(50.0%)	10	2865721:2865735	2878325:2878339
WP_003416009.1|2864731_2864953_-	alpha/beta-type small acid-soluble spore protein	NA	G3MAF8	Bacillus_virus	50.0	1.3e-11
WP_003427089.1|2865036_2866263_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
2865721:2865735	attL	AATTGCAAATTTATA	NA	NA	NA	NA
WP_004455002.1|2866324_2867257_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003416006.1|2867345_2867873_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	28.0	4.2e-08
WP_021364696.1|2868101_2869190_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_021380063.1|2869352_2870543_-|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	66.8	5.2e-155
WP_002347229.1|2870620_2870824_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	1.9e-25
WP_032508371.1|2871137_2871371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_100852717.1|2871355_2871796_-	hypothetical protein	NA	A0A1S5SEW0	Streptococcus_phage	31.2	5.6e-14
WP_003431891.1|2872070_2872706_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	2.3e-24
2878325:2878339	attR	AATTGCAAATTTATA	NA	NA	NA	NA
>prophage 223
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2876743	2897524	4188456		Streptococcus_phage(76.92%)	22	NA	NA
WP_021364213.1|2876743_2878036_+	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.7	2.6e-19
WP_009905044.1|2878081_2878306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009905043.1|2878351_2879047_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005946872.1|2879224_2879782_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_032509033.1|2879828_2880740_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.1	6.9e-83
WP_021370669.1|2880983_2882780_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	29.4	4.2e-31
WP_041114890.1|2884329_2886492_-	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	59.8	5.7e-184
WP_021379648.1|2886491_2888942_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	74.8	0.0e+00
WP_004843362.1|2888919_2889318_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
WP_021379649.1|2889434_2889938_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	61.4	2.6e-55
WP_021379650.1|2889955_2890459_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_032508935.1|2890377_2890674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021379651.1|2890762_2891389_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002323342.1|2891459_2891681_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_003865509.1|2891681_2891816_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_003865510.1|2891828_2893025_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.5	6.2e-148
WP_021379652.1|2893269_2893686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021379653.1|2893689_2895072_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.7	4.5e-174
WP_021364860.1|2895141_2895933_-	helix-turn-helix transcriptional regulator	NA	G3MBD2	Bacillus_virus	41.4	6.6e-05
WP_021364861.1|2896076_2896715_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_032542040.1|2896798_2897182_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	55.1	1.2e-31
WP_005339720.1|2897197_2897524_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	1.5e-24
>prophage 224
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2903040	2904042	4188456		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
WP_003427105.1|2903040_2904042_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	42.3	1.8e-60
>prophage 225
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2914898	2916242	4188456		Moraxella_phage(100.0%)	1	NA	NA
WP_003421552.1|2914898_2916242_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	32.2	7.4e-49
>prophage 226
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2929825	2931732	4188456		Tupanvirus(50.0%)	2	NA	NA
WP_003431452.1|2929825_2930839_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	50.8	2.4e-92
WP_014466379.1|2930862_2931732_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	53.7	1.5e-82
>prophage 227
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2951955	2953200	4188456		Heliothis_zea_nudivirus(100.0%)	1	NA	NA
WP_003422953.1|2951955_2953200_-	serine hydroxymethyltransferase	NA	Q8JKP0	Heliothis_zea_nudivirus	48.0	4.7e-98
>prophage 228
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2964412	2968711	4188456	tRNA	Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_009897914.1|2964412_2965219_-	carbon-nitrogen hydrolase	NA	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	29.8	4.5e-17
WP_009890996.1|2965232_2966465_-	cytosine permease	NA	NA	NA	NA	NA
WP_021364704.1|2966923_2968711_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2I2L4Y8	Orpheovirus	31.7	3.8e-08
>prophage 229
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2972786	2982982	4188456		Bacillus_phage(40.0%)	8	NA	NA
WP_003422921.1|2972786_2974994_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	U5J9N6	Bacillus_phage	45.9	2.7e-16
WP_003426450.1|2975067_2975580_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	49.7	1.0e-35
WP_011861665.1|2975592_2978043_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	35.5	3.0e-88
WP_009891005.1|2978055_2979720_-	AarF/ABC1/UbiB kinase family protein	NA	E5ES62	Bathycoccus_sp._RCC1105_virus	34.0	8.6e-47
WP_004454132.1|2980017_2980515_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_003426456.1|2980543_2981923_-	thioether cross-link-forming SCIFF peptide maturase	NA	NA	NA	NA	NA
WP_003426457.1|2982227_2982374_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_004454130.1|2982403_2982982_-	accessory gene regulator B family protein	NA	X5JB40	Clostridium_phage	32.8	4.6e-16
>prophage 230
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2989022	2990573	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_011861669.1|2989022_2990573_-	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	32.5	1.2e-13
>prophage 231
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	2994857	3003330	4188456		Paramecium_bursaria_Chlorella_virus(25.0%)	8	NA	NA
WP_003431790.1|2994857_2996591_-	N-6 DNA methylase	NA	A7RAG0	Paramecium_bursaria_Chlorella_virus	23.5	3.8e-05
WP_003426473.1|2996630_2997029_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_004454122.1|2997031_2998579_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_021367985.1|2998893_2999799_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	35.2	2.2e-20
WP_003422884.1|2999841_3000486_-	di-trans,poly-cis-decaprenylcistransferase	NA	A0A076FI83	Aureococcus_anophage	24.7	1.2e-12
WP_009891020.1|3000624_3001095_+	DUF4358 domain-containing protein	NA	NA	NA	NA	NA
WP_004454119.1|3001217_3002006_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_021364713.1|3002373_3003330_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	27.3	2.3e-12
>prophage 232
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3007190	3036482	4188456	protease	Clostridium_phage(26.67%)	22	NA	NA
WP_003426490.1|3007190_3007898_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	50.4	6.2e-31
WP_021364718.1|3008096_3010010_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|3010093_3011185_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_170320067.1|3011190_3012534_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	43.6	3.0e-90
WP_003426498.1|3012511_3013264_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|3013311_3014220_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003422862.1|3014241_3014991_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_009891031.1|3015019_3016195_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_009897935.1|3016209_3017049_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
WP_004454109.1|3017051_3018209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454108.1|3018224_3018947_-	glycosyl transferase	NA	A0A1V0SBR5	Catovirus	34.3	9.3e-06
WP_003426511.1|3018958_3020032_-	mannose-1-phosphate guanylyltransferase	NA	A0A1V0SH58	Hokovirus	29.6	1.3e-32
WP_004454107.1|3020053_3021760_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	45.1	2.2e-138
WP_004454106.1|3021805_3023362_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_004454105.1|3023476_3024532_-	cell wall-binding protein Cwp7	NA	A0A0A8WJG0	Clostridium_phage	28.9	5.9e-17
WP_009891044.1|3024626_3025313_-	sugar transferase	NA	NA	NA	NA	NA
WP_004454104.1|3025532_3027557_-	N-acetylmuramoyl-L-alanine amidase	NA	J9PV86	Bacillus_phage	34.9	9.5e-16
WP_192574392.1|3027810_3029256_-	DUF5009 domain-containing protein	NA	NA	NA	NA	NA
WP_004454101.1|3029389_3030967_-	cell wall-binding protein Cwp5	NA	A7KUY3	Bacillus_phage	28.6	2.9e-12
WP_021368338.1|3031263_3033675_-|protease	cell wall-binding cysteine protease Cwp84	protease	A0A0A8WJG0	Clostridium_phage	35.6	2.9e-27
WP_004454098.1|3033901_3034297_+	GtrA family protein	NA	NA	NA	NA	NA
WP_004454096.1|3034349_3036482_-	cell wall-binding repeat-containing protein	NA	A0A0A8WJG0	Clostridium_phage	30.8	5.9e-24
>prophage 233
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3042203	3048110	4188456		Clostridioides_phage(100.0%)	3	NA	NA
WP_021397628.1|3042203_3044402_-	S-layer protein SlpA	NA	A0A2R2ZGK6	Clostridioides_phage	29.0	5.1e-15
WP_004454089.1|3044691_3046290_-	cell wall-binding repeat-containing protein	NA	A0A2R2ZGK6	Clostridioides_phage	42.1	1.4e-62
WP_021364727.1|3046508_3048110_-	cell wall-binding protein Cwp11	NA	A0A2R2ZGK6	Clostridioides_phage	39.0	1.1e-59
>prophage 234
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3056904	3066407	4188456	tRNA	Clostridioides_phage(25.0%)	9	NA	NA
WP_009897968.1|3056904_3058308_-	cell wall-binding protein Cwp9	NA	A0A2R2ZGK6	Clostridioides_phage	45.0	2.0e-65
WP_021359597.1|3058769_3060665_-	cell wall-binding protein Cwp8	NA	A0A0A8WJG0	Clostridium_phage	28.4	9.3e-05
WP_009891067.1|3061291_3061435_-	six-cysteine ranthipeptide SCIFF	NA	NA	NA	NA	NA
WP_004454083.1|3061500_3061863_-	TIGR04086 family membrane protein	NA	NA	NA	NA	NA
WP_003426573.1|3061920_3062214_-	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_009897970.1|3062347_3063469_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	48.5	1.3e-94
WP_003426576.1|3063547_3064033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004454081.1|3064044_3065070_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003426579.1|3065387_3066407_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	32.9	8.8e-10
>prophage 235
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3076333	3080321	4188456		Bacillus_phage(66.67%)	3	NA	NA
WP_003426603.1|3076333_3076642_+	hypothetical protein	NA	A0A0A8WF25	Clostridium_phage	57.3	2.9e-25
WP_003426617.1|3076803_3078594_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.0	1.2e-54
WP_009897981.1|3078593_3080321_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.0	3.2e-36
>prophage 236
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3098524	3102727	4188456		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_021364729.1|3098524_3101299_-	calcium-translocating P-type ATPase, PMCA-type	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	29.1	1.3e-84
WP_003436123.1|3101470_3102727_-	serine hydroxymethyltransferase	NA	G9I092	Helicoverpa_zea_nudivirus	40.9	1.6e-77
>prophage 237
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3109878	3114882	4188456	tRNA	uncultured_Mediterranean_phage(50.0%)	3	NA	NA
WP_021364733.1|3109878_3111150_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.7	4.8e-90
WP_021368342.1|3111965_3113570_-	amidohydrolase	NA	NA	NA	NA	NA
WP_095904029.1|3113955_3114882_+	carbon-nitrogen hydrolase family protein	NA	A0A1J0F985	Only_Syngen_Nebraska_virus	24.1	4.2e-11
>prophage 238
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3124717	3126232	4188456		Tupanvirus(100.0%)	1	NA	NA
WP_011861716.1|3124717_3126232_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	31.5	5.4e-56
>prophage 239
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3153825	3154608	4188456		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_003439676.1|3153825_3154608_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.4	2.4e-15
>prophage 240
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3165570	3169519	4188456		Bacillus_virus(50.0%)	3	NA	NA
WP_003439713.1|3165570_3166725_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	26.5	2.7e-07
WP_009903356.1|3166806_3168525_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_009898064.1|3168529_3169519_-	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	33.6	1.1e-22
>prophage 241
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3209401	3210148	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_003439795.1|3209401_3210148_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	36.3	1.2e-16
>prophage 242
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3214362	3223352	4188456		Bacillus_virus(25.0%)	8	NA	NA
WP_011861776.1|3214362_3215241_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.3	4.7e-20
WP_003439810.1|3215233_3216016_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011861777.1|3216016_3216646_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009898085.1|3217040_3217667_-	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_003439817.1|3217742_3218714_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A218KC18	Bacillus_phage	59.4	8.1e-106
WP_004453866.1|3218725_3220825_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A0K2FMK0	Brevibacillus_phage	54.0	1.0e-217
WP_009898087.1|3221302_3222028_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_021364755.1|3222155_3223352_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	6.7e-17
>prophage 243
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3235556	3236945	4188456		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_009903395.1|3235556_3236945_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	42.6	4.9e-96
>prophage 244
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3257227	3257827	4188456		Tetraselmis_virus(100.0%)	1	NA	NA
WP_003432026.1|3257227_3257827_-	SIS domain-containing protein	NA	A0A2P0VNK5	Tetraselmis_virus	37.1	3.9e-26
>prophage 245
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3264154	3264472	4188456		Streptomyces_phage(100.0%)	1	NA	NA
WP_004453775.1|3264154_3264472_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	36.0	3.4e-13
>prophage 246
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3270566	3273110	4188456		Bacillus_phage(100.0%)	2	NA	NA
WP_009898108.1|3270566_3271976_-	hypothetical protein	NA	A0A223LDP1	Bacillus_phage	32.8	4.3e-47
WP_003439899.1|3271979_3273110_-	ATP-binding protein	NA	A0A223LDC9	Bacillus_phage	33.1	1.5e-50
>prophage 247
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3290396	3291149	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_003439918.1|3290396_3291149_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.9	2.1e-32
>prophage 248
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3313163	3320360	4188456		Leptospira_phage(50.0%)	6	NA	NA
WP_021364791.1|3313163_3316499_-	DEAD/DEAH box helicase family protein	NA	Q6NDX2	Leptospira_phage	26.6	6.6e-14
WP_003439943.1|3316548_3316977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021364795.1|3316966_3317347_-	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_003439946.1|3317379_3317688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021364784.1|3317732_3318893_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_021364763.1|3318896_3320360_-	SAM-dependent DNA methyltransferase	NA	A0A1W6JNK1	Staphylococcus_phage	28.7	4.2e-21
>prophage 249
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3331541	3332696	4188456		Streptococcus_phage(100.0%)	1	NA	NA
WP_021364798.1|3331541_3332696_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	37.4	6.0e-47
>prophage 250
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3348782	3350216	4188456		Pandoravirus(100.0%)	1	NA	NA
WP_003439996.1|3348782_3350216_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	25.2	3.5e-28
>prophage 251
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3362792	3363434	4188456		Synechococcus_phage(100.0%)	1	NA	NA
WP_003440006.1|3362792_3363434_+	hypothetical protein	NA	A0A0E3FKM5	Synechococcus_phage	34.6	3.8e-27
>prophage 252
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3375335	3376790	4188456		Pandoravirus(100.0%)	1	NA	NA
WP_021364775.1|3375335_3376790_-	family 1 glycosylhydrolase	NA	A0A0B5JD41	Pandoravirus	24.6	4.9e-22
>prophage 253
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3380823	3382468	4188456		Cryptophlebia_leucotreta_granulosis_virus(50.0%)	2	NA	NA
WP_003440033.1|3380823_3382011_-	glucosyltransferase	NA	Q7T5G5	Cryptophlebia_leucotreta_granulosis_virus	28.1	8.1e-07
WP_011861830.1|3382042_3382468_-	helix-turn-helix transcriptional regulator	NA	A0A1P8BKS6	Lactococcus_phage	49.1	3.2e-06
>prophage 254
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3391603	3392275	4188456		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_009903495.1|3391603_3392275_-	beta-phosphoglucomutase	NA	M1I080	Acanthocystis_turfacea_Chlorella_virus	27.7	3.2e-08
>prophage 255
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3411612	3412575	4188456		Streptococcus_phage(100.0%)	1	NA	NA
WP_009903505.1|3411612_3412575_-	WYL domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	29.0	9.4e-14
>prophage 256
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3418875	3420501	4188456		Streptococcus_phage(100.0%)	1	NA	NA
WP_011861848.1|3418875_3420501_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	26.1	2.5e-35
>prophage 257
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3429596	3441968	4188456	integrase	Bacillus_phage(33.33%)	14	3418155:3418171	3445013:3445029
3418155:3418171	attL	TGAATTAAGAAAGTGTA	NA	NA	NA	NA
WP_021362063.1|3429596_3430340_-	hypothetical protein	NA	A0A0B5D175	Listeria_phage	50.0	6.6e-23
WP_003433761.1|3430361_3430676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003433759.1|3430679_3430880_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011861854.1|3431026_3431788_+	helix-turn-helix transcriptional regulator	NA	Q786F1	Bacillus_phage	45.6	4.9e-05
WP_003433754.1|3432039_3432531_+	helix-turn-helix domain-containing protein	NA	F6MII3	Haemophilus_phage	38.1	9.1e-05
WP_011861855.1|3432622_3433375_+	Fic family protein	NA	NA	NA	NA	NA
WP_011861856.1|3433364_3434531_+|integrase	site-specific integrase	integrase	A0A1B0T6A8	Bacillus_phage	31.3	1.1e-32
WP_021362065.1|3434646_3434877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021362066.1|3434882_3435362_-	DUF3990 domain-containing protein	NA	NA	NA	NA	NA
WP_003433743.1|3435361_3435577_-	DUF3791 domain-containing protein	NA	NA	NA	NA	NA
WP_021380127.1|3436066_3437218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_021364801.1|3437342_3438962_-	DNA adenine methylase	NA	A0A249XUJ2	Enterococcus_phage	44.2	1.2e-05
WP_021364804.1|3438964_3440257_-	DNA adenine methylase	NA	NA	NA	NA	NA
WP_021364899.1|3440402_3441968_-	recombinase family protein	NA	A0A0A7RTP8	Clostridium_phage	46.1	5.0e-81
3445013:3445029	attR	TACACTTTCTTAATTCA	NA	NA	NA	NA
>prophage 258
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3451724	3460569	4188456		Liberibacter_phage(66.67%)	5	NA	NA
WP_021364808.1|3451724_3454706_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	23.0	1.6e-19
WP_021364805.1|3454740_3456012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021364807.1|3456073_3457465_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_032507033.1|3457464_3459486_-	SAM-dependent DNA methyltransferase	NA	A0A220A2U5	Liberibacter_phage	23.3	6.8e-22
WP_003421925.1|3460113_3460569_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	54.5	2.6e-38
>prophage 259
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3465584	3474944	4188456	transposase	Anomala_cuprea_entomopoxvirus(33.33%)	7	NA	NA
WP_003433732.1|3465584_3466457_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	33.5	6.3e-25
WP_003433730.1|3466985_3467477_-	YfbM family protein	NA	NA	NA	NA	NA
WP_003434984.1|3468696_3470832_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.4	7.3e-83
WP_021364812.1|3471424_3472039_+	DNA alkylation repair protein	NA	NA	NA	NA	NA
WP_009898297.1|3472056_3472419_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003434976.1|3472524_3473022_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_061364329.1|3473825_3474944_+|transposase	transposase	transposase	A0A0H3UZC2	Geobacillus_virus	54.6	5.1e-112
>prophage 260
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3478061	3479354	4188456		Streptococcus_phage(100.0%)	1	NA	NA
WP_009898301.1|3478061_3479354_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	67.7	6.9e-161
>prophage 261
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3488082	3494965	4188456		Acinetobacter_phage(50.0%)	4	NA	NA
WP_021364815.1|3488082_3490644_-	selenium-dependent xanthine dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	30.8	4.4e-10
WP_009891590.1|3490637_3492029_-	dihydropyrimidinase	NA	NA	NA	NA	NA
WP_009891591.1|3492311_3493421_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003434158.1|3493612_3494965_-	purine permease	NA	Q9KX94	Enterobacteria_phage	30.6	5.5e-36
>prophage 262
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3510930	3527062	4188456		Clostridium_phage(14.29%)	14	NA	NA
WP_003434288.1|3510930_3511857_-	conserved phage C-terminal domain-containing protein	NA	Q8SBM0	Clostridium_phage	43.9	8.5e-12
WP_003434289.1|3512446_3513367_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003434290.1|3513452_3515873_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.6	8.4e-144
WP_003434291.1|3515872_3516895_+	serine hydrolase	NA	NA	NA	NA	NA
WP_003434292.1|3517047_3517794_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003434293.1|3517879_3519130_+	multidrug efflux MFS transporter Cme	NA	D0R099	Streptococcus_phage	30.4	2.7e-37
WP_021364818.1|3519646_3520660_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003434295.1|3520662_3521691_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003434296.1|3521690_3522536_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	31.9	1.0e-16
WP_003434298.1|3522966_3524097_-	HAMP domain-containing histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.7e-06
WP_003434299.1|3524093_3524765_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.4	1.5e-42
WP_003434300.1|3524967_3525618_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_009891651.1|3525674_3525905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003434301.1|3526468_3527062_+	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	28.7	1.6e-08
>prophage 263
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3534710	3539677	4188456		Bacillus_virus(50.0%)	3	NA	NA
WP_003438780.1|3534710_3535472_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.3	3.7e-29
WP_003438782.1|3535487_3537023_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003438783.1|3537436_3539677_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	34.1	2.9e-138
>prophage 264
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3556843	3557383	4188456		uncultured_virus(100.0%)	1	NA	NA
WP_009891688.1|3556843_3557383_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	30.5	2.3e-09
>prophage 265
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3562182	3562818	4188456		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_003422086.1|3562182_3562818_-	single-stranded DNA-binding protein	NA	A0A2H4J8K3	uncultured_Caudovirales_phage	52.9	1.6e-54
>prophage 266
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3577959	3579218	4188456		Tupanvirus(50.0%)	2	NA	NA
WP_009898387.1|3577959_3578724_-	polysaccharide deacetylase family protein	NA	A0A2K9LAZ4	Tupanvirus	28.3	5.2e-07
WP_003422115.1|3579014_3579218_+	alpha/beta-type small acid-soluble spore protein	NA	G3MAF8	Bacillus_virus	48.4	6.0e-11
>prophage 267
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3584829	3652862	4188456	head,plate,tRNA,capsid,holin,terminase,portal,integrase,tail	Clostridium_phage(87.65%)	94	3626311:3626328	3650625:3650642
WP_016728510.1|3584829_3585540_-	two-component system response regulator RgaR	NA	A0A2R2ZGH8	Clostridioides_phage	36.9	1.2e-37
WP_004454011.1|3585964_3588631_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	43.0	1.0e-174
WP_003432345.1|3589264_3590092_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_009891715.1|3590139_3591576_-	iron hydrogenase	NA	NA	NA	NA	NA
WP_009898391.1|3591662_3592532_-	FUSC family protein	NA	NA	NA	NA	NA
WP_003432348.1|3592689_3593343_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_003432349.1|3593370_3594135_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.5	1.5e-14
WP_003432350.1|3594153_3594978_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_021361136.1|3594979_3595897_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_021361137.1|3596277_3596724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021366416.1|3597446_3597833_-	BlaI/MecI/CopY family transcriptional regulator	NA	X5JAW5	Clostridium_phage	100.0	1.5e-66
WP_070538156.1|3597872_3598154_-	BlaI/MecI/CopY family transcriptional regulator	NA	Q24LF7	Clostridium_phage	98.9	8.2e-43
WP_011861054.1|3598767_3598911_-	hypothetical protein	NA	A0A0A8WJ06	Clostridium_phage	95.7	4.3e-16
WP_009898401.1|3599171_3599360_+	hypothetical protein	NA	A0A0A8WJ69	Clostridium_phage	100.0	3.1e-30
WP_011861053.1|3599607_3600312_-	hypothetical protein	NA	Q24LF8	Clostridium_phage	99.3	3.1e-70
WP_011861052.1|3600313_3600745_-	protein-export chaperone SecB	NA	Q24LG0	Clostridium_phage	100.0	1.9e-75
WP_011861051.1|3600762_3601359_-	hypothetical protein	NA	Q24LG1	Clostridium_phage	99.5	1.8e-95
WP_021371072.1|3601871_3602168_-	hypothetical protein	NA	Q24LG2	Clostridium_phage	90.8	4.1e-45
WP_021371071.1|3602184_3603000_-	N-acetylmuramoyl-L-alanine amidase	NA	Q24LG3	Clostridium_phage	97.0	5.3e-151
WP_021366402.1|3602999_3603257_-|holin	phage holin family protein	holin	A0A0A8WF70	Clostridium_phage	83.5	1.5e-35
WP_021363500.1|3603260_3603551_-	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	100.0	6.3e-46
WP_021366412.1|3603581_3604148_-	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	80.2	1.2e-37
WP_021366413.1|3604181_3604364_-	hypothetical protein	NA	A0A090D845	Clostridium_phage	96.7	1.9e-24
WP_074115165.1|3604363_3604657_-	hypothetical protein	NA	A0A0A8WIP3	Clostridium_phage	97.9	2.6e-47
WP_100852720.1|3604681_3606376_-	hypothetical protein	NA	X5JAW3	Clostridium_phage	70.3	1.5e-200
WP_100852721.1|3606392_3607418_-|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	97.9	1.3e-162
WP_074090152.1|3607429_3608047_-	YmfQ family protein	NA	A0A0A8WFE8	Clostridium_phage	97.1	6.7e-114
WP_100852722.1|3608039_3609089_-|plate	baseplate J/gp47 family protein	plate	A0A0A8WJT7	Clostridium_phage	97.4	2.6e-190
WP_022583335.1|3609089_3609509_-	DUF2634 domain-containing protein	NA	A0A0A8WFW6	Clostridium_phage	92.1	1.8e-70
WP_021434735.1|3609513_3609774_-	DUF2577 domain-containing protein	NA	X5JAW2	Clostridium_phage	100.0	4.6e-40
WP_022583333.1|3609787_3611740_-	C40 family peptidase	NA	A0A0A8WIF2	Clostridium_phage	77.5	2.1e-270
WP_022583336.1|3611732_3612422_-	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.7	1.7e-118
WP_100852723.1|3612437_3614780_-	tape measure protein	NA	X5JAB7	Clostridium_phage	96.3	0.0e+00
WP_021434741.1|3614849_3615620_-	SHOCT domain-containing protein	NA	X5JB37	Clostridium_phage	100.0	2.2e-106
WP_050579201.1|3615898_3616720_-	hypothetical protein	NA	X5JAW1	Clostridium_phage	47.3	4.5e-65
WP_021361718.1|3616846_3617017_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_009901465.1|3617360_3617522_-	hypothetical protein	NA	A0A0A8WFE0	Clostridium_phage	100.0	5.9e-22
WP_021360957.1|3617842_3618283_-	phage XkdN-like family protein	NA	A0A0A8WJT4	Clostridium_phage	98.6	1.6e-77
WP_015984846.1|3618287_3618545_-	hypothetical protein	NA	A0A0A8WFW0	Clostridium_phage	100.0	2.9e-39
WP_015984845.1|3618597_3619068_-|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	100.0	2.1e-83
WP_074108958.1|3619089_3620400_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A0A8WIF0	Clostridium_phage	95.2	9.2e-238
WP_021416562.1|3620400_3620577_-	hypothetical protein	NA	A0A0A8WFD8	Clostridium_phage	96.6	2.9e-22
WP_042741663.1|3620569_3621007_-	hypothetical protein	NA	X5JAB5	Clostridium_phage	92.4	2.2e-74
WP_009896626.1|3620999_3621425_-	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	100.0	1.7e-76
WP_021379430.1|3621424_3621787_-	hypothetical protein	NA	X5JAV9	Clostridium_phage	85.8	8.9e-50
WP_021371051.1|3621786_3622131_-|head,tail	phage head-tail connector protein	head,tail	A0A0A7RTX9	Clostridium_phage	71.2	2.0e-38
WP_021371050.1|3622141_3623161_-|capsid	major capsid protein	capsid	S5MA55	Brevibacillus_phage	44.8	4.1e-76
WP_021379431.1|3623172_3623553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021379426.1|3623568_3624141_-	phage scaffolding protein	NA	NA	NA	NA	NA
WP_021379428.1|3624187_3624418_-	hypothetical protein	NA	A0A090EUB5	Clostridium_phage	90.8	3.7e-33
WP_021379429.1|3624468_3624741_-	hypothetical protein	NA	NA	NA	NA	NA
3626311:3626328	attL	ACTTTTGATTTATAGCAT	NA	NA	NA	NA
WP_042741666.1|3626579_3627980_-|portal	phage portal protein	portal	A0A0A7S0I9	Clostridium_phage	52.5	3.0e-133
WP_181161974.1|3627984_3629253_-|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	2.2e-244
WP_011861025.1|3629230_3629923_-	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	94.3	2.5e-117
WP_009894744.1|3629992_3630220_-	hypothetical protein	NA	A0A0A8WFZ2	Clostridium_phage	100.0	2.1e-36
WP_009894743.1|3630343_3630661_+	hypothetical protein	NA	A0A0A8WJ81	Clostridium_phage	100.0	5.2e-54
WP_009894742.1|3630640_3630829_-	hypothetical protein	NA	A0A0A8WIH0	Clostridium_phage	100.0	3.2e-27
WP_009894741.1|3630905_3631517_-	hypothetical protein	NA	A0A0A8WFI2	Clostridium_phage	100.0	6.9e-111
WP_009894739.1|3631516_3631690_-	hypothetical protein	NA	A0A0A8WJV0	Clostridium_phage	100.0	5.8e-23
WP_011861022.1|3632437_3632926_-	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	100.0	6.1e-86
WP_011861021.1|3633019_3633745_-	phage antirepressor Ant	NA	A0A090DCZ8	Clostridium_phage	99.6	1.3e-129
WP_011861020.1|3633759_3634167_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0A8WIA1	Clostridium_phage	85.9	3.3e-61
WP_011861019.1|3634180_3634987_-	DNA adenine methylase	NA	Q24LC8	Clostridium_phage	100.0	1.3e-157
WP_015981545.1|3635115_3635355_-	hypothetical protein	NA	Q24LC9	Clostridium_phage	100.0	1.0e-41
WP_011861016.1|3635368_3635554_-	hypothetical protein	NA	Q24LD0	Clostridium_phage	100.0	5.4e-27
WP_011861015.1|3635632_3636100_-	hypothetical protein	NA	Q24LD1	Clostridium_phage	100.0	4.8e-72
WP_011861014.1|3636102_3636474_-	hypothetical protein	NA	Q24LD2	Clostridium_phage	100.0	9.1e-66
WP_011861013.1|3636466_3636640_-	hypothetical protein	NA	Q24LD3	Clostridium_phage	100.0	1.3e-27
WP_100852725.1|3636636_3637362_-	phosphoadenosine phosphosulfate reductase family protein	NA	Q24LD4	Clostridium_phage	98.7	1.2e-130
WP_100852726.1|3637370_3638366_-	nucleoid-associated protein	NA	J9QE81	Clostridium_phage	83.2	6.9e-153
WP_011861010.1|3638377_3638587_-	hypothetical protein	NA	J9QEC7	Clostridium_phage	100.0	3.5e-30
WP_021418808.1|3638676_3639750_-	DNA cytosine methyltransferase	NA	A0A0A8WFL3	Clostridium_phage	99.7	1.1e-209
WP_022583271.1|3639845_3640121_-	hypothetical protein	NA	X5JAX1	Clostridium_phage	97.8	4.2e-44
WP_022583259.1|3640172_3640331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022583269.1|3640449_3640623_-	DUF3797 domain-containing protein	NA	Q24LE0	Clostridium_phage	96.5	3.2e-29
WP_021359694.1|3640619_3640760_-	hypothetical protein	NA	J9QE80	Clostridium_phage	95.7	2.7e-15
WP_021395556.1|3640728_3641109_-	NUMOD1 domain protein	NA	X5JAK1	Clostridium_phage	63.8	1.1e-34
WP_021395565.1|3641113_3641386_-	hypothetical protein	NA	Q24LE3	Clostridium_phage	97.6	2.5e-41
WP_074124550.1|3641459_3641867_-	single-stranded DNA-binding protein	NA	A0A0A8WIK6	Clostridium_phage	99.3	4.9e-73
WP_011861749.1|3641882_3642056_-	resolvase	NA	A0A090EUJ6	Clostridium_phage	100.0	5.8e-23
WP_074124549.1|3642114_3642996_-	DnaD domain protein	NA	A0A0A8WFH2	Clostridium_phage	96.2	6.2e-153
WP_074105726.1|3643010_3643595_-	ERF family protein	NA	A0A0A8WJU6	Clostridium_phage	99.5	3.0e-103
WP_021403371.1|3643604_3644114_-	siphovirus Gp157 family protein	NA	A0A0A8WJQ2	Clostridium_phage	98.2	1.1e-82
WP_021403370.1|3644196_3644442_-	hypothetical protein	NA	X5JAW8	Clostridium_phage	84.0	1.5e-29
WP_021435090.1|3644747_3645077_-	helix-turn-helix domain-containing protein	NA	X5JA04	Clostridium_phage	93.6	3.1e-49
WP_009894678.1|3645146_3645938_-	ORF6N domain-containing protein	NA	X5JAW6	Clostridium_phage	100.0	4.2e-145
WP_022616853.1|3645975_3646179_-	helix-turn-helix transcriptional regulator	NA	A8ATX6	Listeria_phage	57.8	1.5e-14
WP_022616852.1|3646344_3646719_+	helix-turn-helix transcriptional regulator	NA	A0A142LP08	Marinitoga_camini_virus	39.8	4.8e-06
WP_074136284.1|3647389_3647587_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	63.5	1.7e-18
WP_074136283.1|3647625_3648027_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A090DBV2	Clostridium_phage	92.5	4.0e-67
WP_074436252.1|3648098_3649217_+|integrase	site-specific integrase	integrase	X5JB41	Clostridium_phage	77.4	2.7e-161
WP_003432361.1|3649367_3650048_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	27.7	1.9e-16
WP_021364827.1|3650097_3652113_-	sensor histidine kinase	NA	NA	NA	NA	NA
3650625:3650642	attR	ACTTTTGATTTATAGCAT	NA	NA	NA	NA
WP_003417201.1|3652184_3652862_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	28.3	7.6e-26
>prophage 268
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3656701	3657367	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_004453991.1|3656701_3657367_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.2	8.5e-22
>prophage 269
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3667962	3673797	4188456		Streptococcus_phage(33.33%)	4	NA	NA
WP_009898446.1|3667962_3668766_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	36.3	9.0e-34
WP_021364829.1|3669090_3671460_-	glycyl radical protein	NA	A0A2K8HKE5	Bacteriophage	45.3	2.8e-06
WP_003432388.1|3671464_3672373_-	glycyl-radical enzyme activating protein	NA	NA	NA	NA	NA
WP_003435637.1|3672717_3673797_-	trypsin-like peptidase domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	25.7	3.3e-15
>prophage 270
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3691003	3696498	4188456	protease	Moraxella_phage(33.33%)	5	NA	NA
WP_021364834.1|3691003_3693367_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	44.5	1.4e-175
WP_003417110.1|3693546_3694059_+	chromate transporter	NA	NA	NA	NA	NA
WP_003427941.1|3694046_3694574_+	chromate transporter	NA	NA	NA	NA	NA
WP_003417105.1|3694644_3695895_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.1	6.1e-146
WP_003417102.1|3695913_3696498_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	58.8	9.3e-57
>prophage 271
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3700106	3702131	4188456		Ralstonia_phage(100.0%)	1	NA	NA
WP_009891779.1|3700106_3702131_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	37.6	3.8e-113
>prophage 272
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3712582	3713242	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_003437316.1|3712582_3713242_-	two-component system response regulator CprR	NA	W8CYM9	Bacillus_phage	33.6	4.2e-29
>prophage 273
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3717573	3721361	4188456		Cedratvirus(33.33%)	3	NA	NA
WP_100852727.1|3717573_3719322_-	spore surface glycoprotein BclB	NA	A0A285PXU9	Cedratvirus	68.0	8.4e-53
WP_009898508.1|3719388_3720465_-	glycosyltransferase family 2 protein	NA	A0A1V0SAJ8	Catovirus	25.3	1.3e-16
WP_003436212.1|3720776_3721361_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	51.3	3.6e-48
>prophage 274
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3727380	3729904	4188456		Klosneuvirus(50.0%)	2	NA	NA
WP_003436220.1|3727380_3728919_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	28.2	7.7e-50
WP_003436222.1|3729190_3729904_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.1	2.8e-31
>prophage 275
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3733647	3734643	4188456		Staphylococcus_phage(100.0%)	1	NA	NA
WP_021364843.1|3733647_3734643_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	2.3e-15
>prophage 276
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3741994	3772180	4188456	transposase	Streptococcus_phage(64.71%)	29	NA	NA
WP_003436248.1|3741994_3742633_+	hypothetical protein	NA	A0A1V0DZZ4	Clostridioides_phage	78.0	2.8e-14
WP_016729349.1|3743121_3744882_-	recombinase family protein	NA	A0A2I4R675	Erysipelothrix_phage	59.9	5.7e-182
WP_009898594.1|3744944_3745088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009898596.1|3745406_3745646_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_016729348.1|3745650_3746067_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	38.7	1.7e-20
WP_009898601.1|3747413_3747581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009898603.1|3747593_3750359_-	magnesium-translocating P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	25.6	5.8e-48
WP_009898605.1|3750524_3750836_-	DUF3784 domain-containing protein	NA	NA	NA	NA	NA
WP_009898609.1|3751082_3751760_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	36.0	3.3e-13
WP_009898610.1|3751897_3752401_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_016729346.1|3752416_3755080_-	magnesium-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	24.8	1.8e-38
WP_022617708.1|3755172_3755382_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_021395533.1|3755331_3755667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018112598.1|3755865_3756768_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.3	5.8e-82
WP_021370669.1|3757012_3758809_-	reverse transcriptase	NA	A0A0U4J920	Pseudomonas_phage	29.4	4.2e-31
WP_021372810.1|3760358_3762563_-	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	51.4	1.1e-182
WP_021403921.1|3762562_3765013_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.1	0.0e+00
WP_008393094.1|3764990_3765389_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
WP_009898623.1|3765506_3766010_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.2	4.4e-55
WP_021361564.1|3766027_3766531_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_022620525.1|3766449_3766746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021401231.1|3766844_3767639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323342.1|3767677_3767899_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	9.0e-29
WP_021381637.1|3767899_3768034_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_021361566.1|3768046_3769243_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.8	1.4e-147
WP_021403925.1|3769427_3770822_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.1	5.0e-173
WP_021361568.1|3770915_3771353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021361569.1|3771454_3771838_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	57.0	6.8e-32
WP_021373079.1|3771853_3772180_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	52.4	1.8e-25
>prophage 277
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3775592	3776957	4188456		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_021361177.1|3775592_3776957_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	45.0	1.5e-105
>prophage 278
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3780111	3786402	4188456		Streptococcus_phage(66.67%)	4	NA	NA
WP_003436251.1|3780111_3783681_-	DNA polymerase III subunit alpha	NA	A0A0K1Y8F0	Streptomyces_phage	39.7	2.9e-217
WP_003436252.1|3783837_3784785_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	32.1	1.2e-34
WP_003416968.1|3784801_3785227_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_009891913.1|3785295_3786402_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	35.8	1.6e-44
>prophage 279
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3796436	3798233	4188456		Phaeocystis_pouchetii_virus(100.0%)	1	NA	NA
WP_009898644.1|3796436_3798233_-	mannonate oxidoreductase	NA	F2QAF8	Phaeocystis_pouchetii_virus	29.2	5.1e-13
>prophage 280
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3801451	3804277	4188456		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_003436266.1|3801451_3804277_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.6	0.0e+00
>prophage 281
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3810869	3811940	4188456		Bacillus_virus(100.0%)	1	NA	NA
WP_003436292.1|3810869_3811940_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.8	1.0e-29
>prophage 282
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3856836	3857994	4188456		Moraxella_phage(100.0%)	1	NA	NA
WP_003437815.1|3856836_3857994_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 283
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3862989	3864819	4188456		Lactobacillus_phage(50.0%)	3	NA	NA
WP_003421356.1|3862989_3863373_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2K9V5D0	Lactobacillus_phage	41.9	2.6e-15
WP_003421359.1|3863341_3863629_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_003437830.1|3863661_3864819_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	30.5	5.6e-29
>prophage 284
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3873858	3878278	4188456		Bacillus_phage(33.33%)	6	NA	NA
WP_003421374.1|3873858_3874296_-	dCMP deaminase	NA	A7KUY9	Bacillus_phage	43.4	3.2e-25
WP_003437839.1|3874521_3875337_-	EF2563 family selenium-dependent molybdenum hydroxylase system protein	NA	NA	NA	NA	NA
WP_003437840.1|3875637_3876267_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003437841.1|3876302_3876755_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_003437844.1|3876771_3877221_-	low molecular weight protein arginine phosphatase	NA	A0A2H4PQT9	Staphylococcus_phage	37.6	6.2e-08
WP_009892045.1|3877237_3878278_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	38.4	5.9e-54
>prophage 285
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3884584	3885550	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_009892053.1|3884584_3885550_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	53.0	3.1e-81
>prophage 286
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3892855	3893134	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_003421415.1|3892855_3893134_-	HU family DNA-binding protein	NA	A0A1P8CWT5	Bacillus_phage	55.6	4.8e-19
>prophage 287
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3896510	3901586	4188456		Paenibacillus_phage(50.0%)	3	NA	NA
WP_009892063.1|3896510_3897050_-	stage V sporulation protein T	NA	A0A2I7SC16	Paenibacillus_phage	69.2	3.5e-10
WP_009892066.1|3897173_3898169_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_021397670.1|3898199_3901586_-	transcription-repair coupling factor	NA	A0A068EU29	Bacillus_phage	26.6	8.8e-06
>prophage 288
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3914877	3917302	4188456		Hokovirus(50.0%)	2	NA	NA
WP_003421448.1|3914877_3915828_-	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	37.2	8.9e-49
WP_009898727.1|3915922_3917302_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A1V0SB89	Catovirus	35.7	4.8e-27
>prophage 289
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3929545	3930541	4188456		Mycoplasma_phage(100.0%)	1	NA	NA
WP_011861991.1|3929545_3930541_-	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	37.9	4.7e-24
>prophage 290
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3933762	3938389	4188456		Mycoplasma_phage(33.33%)	5	NA	NA
WP_003435855.1|3933762_3934758_-	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	39.0	1.1e-25
WP_003435856.1|3934758_3935595_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003435857.1|3935598_3936768_-	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_021364863.1|3936768_3937482_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	1.6e-13
WP_003435860.1|3937522_3938389_-	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.2	9.7e-10
>prophage 291
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3942516	3954974	4188456	tRNA	Bacillus_virus(40.0%)	13	NA	NA
WP_003435867.1|3942516_3944454_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	34.0	2.2e-102
WP_003421489.1|3944849_3945371_-	spore maturation protein	NA	NA	NA	NA	NA
WP_003427659.1|3945386_3945971_-	spore maturation protein A	NA	NA	NA	NA	NA
WP_003427657.1|3946102_3947533_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	54.5	9.1e-138
WP_003421494.1|3947569_3947998_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_016729332.1|3948185_3948890_-	HDIG domain-containing protein	NA	NA	NA	NA	NA
WP_021364874.1|3948912_3949746_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.4	5.6e-55
WP_003435875.1|3949746_3950493_-|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_003427637.1|3950570_3951464_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_021364865.1|3951460_3952396_-	DNA polymerase III, delta subunit	NA	NA	NA	NA	NA
WP_009892113.1|3952398_3953088_-	thymidylate kinase	NA	G3MB74	Bacillus_virus	38.1	2.0e-29
WP_009898754.1|3953218_3954628_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003427633.1|3954782_3954974_-	DUF378 domain-containing protein	NA	A0A2L2DKC6	Acanthamoeba_polyphaga_mimivirus	52.8	5.4e-06
>prophage 292
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3960713	3962243	4188456	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_003434963.1|3960713_3962243_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.3	2.6e-90
>prophage 293
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3967766	3969737	4188456	protease	Ostreococcus_tauri_virus(100.0%)	1	NA	NA
WP_009892124.1|3967766_3969737_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	H8ZJI5	Ostreococcus_tauri_virus	48.1	5.7e-106
>prophage 294
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3972794	3973280	4188456		Bacillus_phage(100.0%)	1	NA	NA
WP_009892129.1|3972794_3973280_-	cell wall hydrolase	NA	A0A172JHR8	Bacillus_phage	37.5	1.0e-16
>prophage 295
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3986855	3987425	4188456		Clostridium_phage(100.0%)	1	NA	NA
WP_003426023.1|3986855_3987425_-	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	61.6	2.2e-58
>prophage 296
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	3994101	3996533	4188456		Planktothrix_phage(33.33%)	3	NA	NA
WP_003426034.1|3994101_3994788_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	3.6e-31
WP_003434897.1|3994870_3995860_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	21.8	3.2e-09
WP_003434895.1|3995846_3996533_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	3.9e-30
>prophage 297
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4000431	4001481	4188456		Halovirus(100.0%)	1	NA	NA
WP_003429883.1|4000431_4001481_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.8	1.1e-58
>prophage 298
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4004996	4006040	4188456		Halovirus(100.0%)	1	NA	NA
WP_003435820.1|4004996_4006040_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	37.4	8.0e-51
>prophage 299
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4014570	4018143	4188456	tRNA	Bacillus_phage(66.67%)	4	NA	NA
WP_022618228.1|4014570_4015752_-	GHKL domain-containing protein	NA	W8CYF6	Bacillus_phage	29.5	5.0e-25
WP_003435805.1|4015741_4016434_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.3	1.5e-40
WP_003435804.1|4016567_4017284_-	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_003435803.1|4017408_4018143_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	35.4	2.4e-33
>prophage 300
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4023705	4024434	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_003429190.1|4023705_4024434_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	28.1	6.9e-17
>prophage 301
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4036666	4037284	4188456		Planktothrix_phage(100.0%)	1	NA	NA
WP_021364883.1|4036666_4037284_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	1.9e-20
>prophage 302
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4044425	4045025	4188456		Acinetobacter_phage(100.0%)	1	NA	NA
WP_003429210.1|4044425_4045025_-	SIS domain-containing protein	NA	E5EYK6	Acinetobacter_phage	27.6	2.1e-11
>prophage 303
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4068612	4077424	4188456		Paenibacillus_phage(20.0%)	7	NA	NA
WP_003435698.1|4068612_4069410_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	37.9	7.8e-38
WP_009892302.1|4069511_4070975_-	M1 family metallopeptidase	NA	NA	NA	NA	NA
WP_021364093.1|4071099_4072158_+	DnaD domain protein	NA	Q24LE6	Clostridium_phage	48.6	2.6e-09
WP_003435695.1|4072166_4073159_+	ATP-binding protein	NA	A0A2K9V3L7	Faecalibacterium_phage	32.0	1.6e-11
WP_003434259.1|4074211_4075501_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	36.5	3.6e-77
WP_003429265.1|4075582_4075891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003420541.1|4076095_4077424_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	47.6	3.7e-109
>prophage 304
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4081570	4082005	4188456		Clostridium_phage(100.0%)	1	NA	NA
WP_003420524.1|4081570_4082005_-	single-stranded DNA-binding protein	NA	A0A0A8WIG9	Clostridium_phage	75.0	3.4e-56
>prophage 305
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4089376	4091070	4188456		Natrialba_phage(50.0%)	2	NA	NA
WP_003420496.1|4089376_4090150_-	ParA family protein	NA	Q8JL10	Natrialba_phage	30.2	2.8e-24
WP_003429292.1|4090284_4091070_-	nucleoid occlusion protein	NA	S5VSZ7	Leptospira_phage	33.8	4.8e-16
>prophage 306
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4096762	4108892	4188456		Bacillus_virus(33.33%)	14	NA	NA
WP_021364095.1|4096762_4097014_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	55.9	7.4e-19
WP_003429302.1|4097045_4097390_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003420485.1|4097467_4097605_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_162835941.1|4098260_4099583_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003420481.1|4099824_4100931_+	DNA polymerase III subunit beta	NA	D0R7I4	Paenibacillus_phage	30.4	4.7e-09
WP_003420479.1|4101067_4101274_+	S4 domain-containing protein YaaA	NA	NA	NA	NA	NA
WP_003429303.1|4101290_4102406_+	DNA replication/repair protein RecF	NA	D7RWF8	Brochothrix_phage	29.1	1.1e-05
WP_021364100.1|4102406_4104308_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	48.6	1.7e-155
WP_003429305.1|4104327_4106754_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	34.3	4.7e-110
WP_003420471.1|4106822_4107119_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_003420469.1|4107118_4107379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429306.1|4107390_4107708_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_003429308.1|4107732_4108119_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003420464.1|4108118_4108892_+	SigB/SigF/SigG family RNA polymerase sigma factor	NA	A0A0A0RV91	Bacillus_phage	30.8	2.9e-21
>prophage 307
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4121483	4125639	4188456	tRNA	uncultured_Mediterranean_phage(50.0%)	3	NA	NA
WP_003435562.1|4121483_4122755_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.0	5.0e-87
WP_003421624.1|4123075_4123531_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_003421622.1|4124001_4125639_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	37.7	8.4e-55
>prophage 308
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4146625	4150626	4188456	protease	Escherichia_phage(50.0%)	2	NA	NA
WP_003425582.1|4146625_4149073_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	40.8	9.8e-132
WP_004453976.1|4149252_4150626_+	DNA repair protein RadA	NA	A0A1V0SI16	Klosneuvirus	33.9	1.4e-05
>prophage 309
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4165374	4167105	4188456		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_021362098.1|4165374_4167105_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.2	3.4e-38
>prophage 310
NZ_CP025046	Clostridioides difficile strain W0022a chromosome, complete genome	4188456	4178862	4185409	4188456	tRNA	Tupanvirus(33.33%)	6	NA	NA
WP_009895182.1|4178862_4180308_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	41.0	1.4e-109
WP_003435581.1|4180747_4182229_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003421202.1|4182449_4182605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009895184.1|4182749_4184147_+|tRNA	cysteine--tRNA ligase	tRNA	A0A161HRB7	Powai_lake_megavirus	28.4	5.2e-53
WP_003435577.1|4184131_4184545_+	RNase3 domain protein	NA	NA	NA	NA	NA
WP_003421197.1|4184650_4185409_+	FAD-dependent thymidylate synthase	NA	K9MCR9	Sulfolobus_virus	46.1	3.4e-43
