assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002804285.1_ASM280428v1	NZ_CP024958	Lactococcus lactis subsp. lactis strain G423 chromosome, complete genome	1	1334822-1334920	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG	Orphan	CTATGGATAAAATGCTCGCTTTGGTCGC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG	NA,NA	NA|383aa|up_9|NZ_CP024958.1_1325420_1326569_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|393aa|up_8|NZ_CP024958.1_1326741_1327920_-	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|209aa|up_7|NZ_CP024958.1_1328064_1328691_-	COG4915, XpaC, 5-bromo-4-chloroindolyl phosphate hydrolysis protein [General function prediction only]	NA|342aa|up_6|NZ_CP024958.1_1328882_1329908_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|314aa|up_5|NZ_CP024958.1_1329950_1330892_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|136aa|up_4|NZ_CP024958.1_1330962_1331370_+	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|177aa|up_3|NZ_CP024958.1_1331366_1331897_+	COG4769, COG4769, Predicted membrane protein [Function unknown]	NA|320aa|up_2|NZ_CP024958.1_1331887_1332847_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|239aa|up_1|NZ_CP024958.1_1332843_1333560_+	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]	NA|238aa|up_0|NZ_CP024958.1_1334041_1334755_-	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|312aa|down_0|NZ_CP024958.1_1334975_1335911_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|263aa|down_1|NZ_CP024958.1_1335983_1336772_-	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	NA|455aa|down_2|NZ_CP024958.1_1337102_1338467_-	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|239aa|down_3|NZ_CP024958.1_1338629_1339346_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|476aa|down_4|NZ_CP024958.1_1339417_1340845_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|185aa|down_5|NZ_CP024958.1_1340837_1341392_-	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|276aa|down_6|NZ_CP024958.1_1341388_1342216_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|304aa|down_7|NZ_CP024958.1_1342224_1343136_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|440aa|down_8|NZ_CP024958.1_1343209_1344529_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|309aa|down_9|NZ_CP024958.1_1344643_1345570_-	cd19606, GH113-like, Glycoside hydrolase family 113 beta-mannosidase and similar proteins
GCF_002804285.1_ASM280428v1	NZ_CP024958	Lactococcus lactis subsp. lactis strain G423 chromosome, complete genome	2	1568221-1568574	1	CRT	no		cas3,DEDDh,csa3,DinG	Orphan	GAATCNGACGTTGAATCA	18	3	5	1568239-1568256|1568239-1568256|1568455-1568472|1568539-1568556|1568539-1568556	NZ_CP024958.1_707480-707497|NZ_CP024958.1_1567045-1567062|NZ_CP024958.1_707480-707497|NZ_CP024958.1_1567045-1567062|NZ_CP024958.1_2049847-2049830	NA	7	7	Orphan	cas3,DEDDh,csa3,DinG	NA,NA|69aa|down_8|NZ_CP024958.1_1579766_1579973_-	NA|320aa|up_9|NZ_CP024958.1_1555511_1556471_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|276aa|up_8|NZ_CP024958.1_1556535_1557363_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|315aa|up_7|NZ_CP024958.1_1557503_1558448_-	COG0276, HemH, Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]	NA|80aa|up_6|NZ_CP024958.1_1558709_1558949_-	COG1837, COG1837, Predicted RNA-binding protein (contains KH domain) [General function prediction only]	NA|91aa|up_5|NZ_CP024958.1_1559044_1559317_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|411aa|up_4|NZ_CP024958.1_1559405_1560638_-	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|380aa|up_3|NZ_CP024958.1_1560718_1561858_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|385aa|up_2|NZ_CP024958.1_1562166_1563321_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|236aa|up_1|NZ_CP024958.1_1563380_1564088_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|320aa|up_0|NZ_CP024958.1_1564239_1565199_-	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|170aa|down_0|NZ_CP024958.1_1569499_1570009_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|281aa|down_1|NZ_CP024958.1_1570034_1570877_-	PRK09814, PRK09814, sugar transferase	NA|360aa|down_2|NZ_CP024958.1_1571097_1572177_-	PRK09814, PRK09814, sugar transferase	NA|266aa|down_3|NZ_CP024958.1_1572157_1572955_-	pfam15432, Sec-ASP3, Accessory Sec secretory system ASP3	NA|539aa|down_4|NZ_CP024958.1_1572947_1574564_-	pfam16929, Asp2, Accessory Sec system GspB-transporter	NA|528aa|down_5|NZ_CP024958.1_1574542_1576126_-	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1	NA|409aa|down_6|NZ_CP024958.1_1576125_1577352_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|790aa|down_7|NZ_CP024958.1_1577375_1579745_-	PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed	NA|69aa|down_8|NZ_CP024958.1_1579766_1579973_-	NA	NA|440aa|down_9|NZ_CP024958.1_1580018_1581338_-	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB
GCF_002804285.1_ASM280428v1	NZ_CP024958	Lactococcus lactis subsp. lactis strain G423 chromosome, complete genome	3	1838668-1838762	2	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG	Orphan	TTTATTACTGACAGACTTGTCAGC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG	NA|121aa|up_4|NZ_CP024958.1_1834852_1835215_+,NA|98aa|up_3|NZ_CP024958.1_1835189_1835483_+,NA	NA|102aa|up_9|NZ_CP024958.1_1830475_1830781_-	COG4357, COG4357, Zinc finger domain containing protein (CHY type) [Function unknown]	NA|324aa|up_8|NZ_CP024958.1_1830797_1831769_-	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|190aa|up_7|NZ_CP024958.1_1831774_1832344_-	COG1268, BioY, Uncharacterized conserved protein [General function prediction only]	NA|414aa|up_6|NZ_CP024958.1_1832488_1833730_+	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|383aa|up_5|NZ_CP024958.1_1833719_1834868_+	TIGR01930, 3-ketoacyl-CoA_thiolase, acetyl-CoA acetyltransferases	NA|121aa|up_4|NZ_CP024958.1_1834852_1835215_+	NA	NA|98aa|up_3|NZ_CP024958.1_1835189_1835483_+	NA	NA|249aa|up_2|NZ_CP024958.1_1835479_1836226_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|282aa|up_1|NZ_CP024958.1_1836248_1837094_+	TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II	NA|471aa|up_0|NZ_CP024958.1_1837234_1838647_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|153aa|down_0|NZ_CP024958.1_1838880_1839339_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|161aa|down_1|NZ_CP024958.1_1839454_1839937_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|406aa|down_2|NZ_CP024958.1_1839938_1841156_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|419aa|down_3|NZ_CP024958.1_1841155_1842412_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|257aa|down_4|NZ_CP024958.1_1842549_1843320_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|444aa|down_5|NZ_CP024958.1_1843494_1844826_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|234aa|down_6|NZ_CP024958.1_1844828_1845530_-	COG4862, MecA, Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]	NA|245aa|down_7|NZ_CP024958.1_1845659_1846394_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|229aa|down_8|NZ_CP024958.1_1846393_1847080_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|303aa|down_9|NZ_CP024958.1_1847226_1848135_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
GCF_002804285.1_ASM280428v1	NZ_CP024958	Lactococcus lactis subsp. lactis strain G423 chromosome, complete genome	4	2144746-2144841	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG	Orphan	TCTTCCTCAATCTTCCCAATTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG	NA|198aa|up_1|NZ_CP024958.1_2140763_2141357_-,NA|70aa|down_1|NZ_CP024958.1_2146203_2146413_-,NA|165aa|down_3|NZ_CP024958.1_2146988_2147483_-	NA|315aa|up_9|NZ_CP024958.1_2130396_2131341_-	COG0549, ArcC, Carbamate kinase [Amino acid transport and metabolism]	NA|315aa|up_8|NZ_CP024958.1_2131372_2132317_-	COG0549, ArcC, Carbamate kinase [Amino acid transport and metabolism]	NA|527aa|up_7|NZ_CP024958.1_2132333_2133914_-	TIGR03810, arginine-ornithine_antiporter, arginine-ornithine antiporter	NA|355aa|up_6|NZ_CP024958.1_2134044_2135109_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|411aa|up_5|NZ_CP024958.1_2135291_2136524_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|565aa|up_4|NZ_CP024958.1_2136825_2138520_-	PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed	NA|153aa|up_3|NZ_CP024958.1_2138587_2139046_+	TIGR01529, Arginine_repressor	NA|444aa|up_2|NZ_CP024958.1_2139229_2140561_-	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|198aa|up_1|NZ_CP024958.1_2140763_2141357_-	NA	NA|1035aa|up_0|NZ_CP024958.1_2141572_2144677_-	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins	NA|424aa|down_0|NZ_CP024958.1_2144871_2146143_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|70aa|down_1|NZ_CP024958.1_2146203_2146413_-	NA	NA|164aa|down_2|NZ_CP024958.1_2146473_2146965_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|165aa|down_3|NZ_CP024958.1_2146988_2147483_-	NA	NA|354aa|down_4|NZ_CP024958.1_2147577_2148639_-	pfam18013, Phage_lysozyme2, Phage tail lysozyme	NA|682aa|down_5|NZ_CP024958.1_2148653_2150699_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|856aa|down_6|NZ_CP024958.1_2150699_2153267_-	pfam12846, AAA_10, AAA-like domain	NA|122aa|down_7|NZ_CP024958.1_2153266_2153632_-	pfam12648, TcpE, TcpE family	NA|78aa|down_8|NZ_CP024958.1_2153640_2153874_-	TIGR04298, hypothetical_protein_HMPREF9690_04798, histidine-histamine antiporter	NA|423aa|down_9|NZ_CP024958.1_2153879_2155148_-	cd16386, TcpC_N, N-terminal domain of conjugative transposon protein TcpC
