assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	1	637898-638037	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|336aa|up_9|NZ_CP024801.1_630363_631371_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|NZ_CP024801.1_631576_632455_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|NZ_CP024801.1_632463_633459_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|NZ_CP024801.1_633667_634192_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|NZ_CP024801.1_634185_634689_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|NZ_CP024801.1_634675_634978_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP024801.1_635028_635472_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP024801.1_635451_635970_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|NZ_CP024801.1_636097_636733_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP024801.1_636805_637846_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP024801.1_638050_638626_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP024801.1_638635_639226_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP024801.1_639245_639641_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP024801.1_639598_641635_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP024801.1_641699_642560_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP024801.1_642602_643694_-	pfam00419, Fimbrial, Fimbrial protein	NA|252aa|down_6|NZ_CP024801.1_647226_647982_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional	NA|264aa|down_7|NZ_CP024801.1_647982_648774_-	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID	NA|268aa|down_8|NZ_CP024801.1_648763_649567_-	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC	NA|159aa|down_9|NZ_CP024801.1_649605_650082_-	PRK09756, PRK09756, PTS N-acetylgalactosamine transporter subunit IIB
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	2	666292-666543	1	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|180aa|down_1|NZ_CP024801.1_668050_668590_-	NA|158aa|up_9|NZ_CP024801.1_655866_656340_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP024801.1_656362_657643_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP024801.1_657891_658701_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP024801.1_658755_659220_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP024801.1_659219_659555_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP024801.1_659703_661275_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|NZ_CP024801.1_661649_662984_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP024801.1_662999_663770_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP024801.1_663799_664690_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP024801.1_664786_665932_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP024801.1_666841_668029_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP024801.1_668050_668590_-	NA	NA|115aa|down_2|NZ_CP024801.1_668845_669190_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP024801.1_669378_670317_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP024801.1_670415_671405_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP024801.1_671426_672758_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP024801.1_672783_673992_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP024801.1_674025_676320_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP024801.1_676333_676723_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP024801.1_676794_678159_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	3	681124-681241	2	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP024801.1_681314_681479_-	NA|115aa|up_9|NZ_CP024801.1_668845_669190_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP024801.1_669378_670317_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP024801.1_670415_671405_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP024801.1_671426_672758_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP024801.1_672783_673992_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP024801.1_674025_676320_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP024801.1_676333_676723_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP024801.1_676794_678159_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP024801.1_678433_679765_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP024801.1_679792_681103_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP024801.1_681314_681479_-	NA	NA|234aa|down_1|NZ_CP024801.1_681501_682203_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP024801.1_682307_683204_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP024801.1_683254_683611_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP024801.1_683852_684218_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP024801.1_684510_685497_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP024801.1_685566_686049_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP024801.1_686144_686444_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP024801.1_686433_686838_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP024801.1_686840_687146_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	4	1054574-1055090	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP024801.1_1053283_1053424_-,NA	NA|434aa|up_9|NZ_CP024801.1_1043980_1045282_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP024801.1_1045329_1047564_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP024801.1_1047641_1047890_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP024801.1_1047889_1048225_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP024801.1_1048295_1049087_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP024801.1_1049314_1050952_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP024801.1_1051039_1052338_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP024801.1_1052397_1053270_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP024801.1_1053283_1053424_-	NA	NA|224aa|up_0|NZ_CP024801.1_1053562_1054234_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP024801.1_1055727_1057206_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP024801.1_1057232_1058510_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP024801.1_1058828_1059614_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP024801.1_1059683_1061138_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP024801.1_1061231_1062569_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP024801.1_1062546_1063326_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP024801.1_1063322_1064183_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP024801.1_1064330_1064906_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP024801.1_1064922_1065183_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP024801.1_1065173_1066445_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	5	1077475-1078053	4,3,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|NZ_CP024801.1_1065173_1066445_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP024801.1_1066522_1066888_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP024801.1_1067203_1069003_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP024801.1_1069002_1070715_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP024801.1_1070788_1071523_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP024801.1_1071787_1071940_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|NZ_CP024801.1_1074790_1075537_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP024801.1_1075518_1076169_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP024801.1_1076165_1077089_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP024801.1_1077085_1077379_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP024801.1_1078134_1079172_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024801.1_1079423_1080332_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP024801.1_1080333_1081761_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024801.1_1081760_1082366_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024801.1_1082415_1082739_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024801.1_1082932_1083244_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024801.1_1083262_1083973_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024801.1_1083972_1084452_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP024801.1_1084448_1085498_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP024801.1_1085478_1086240_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	6	1583223-1583340	5	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|105aa|up_3|NZ_CP024801.1_1578303_1578618_-,NA	NA|300aa|up_9|NZ_CP024801.1_1570216_1571116_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|NZ_CP024801.1_1571308_1572499_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|NZ_CP024801.1_1572495_1573755_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|NZ_CP024801.1_1573744_1575373_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|NZ_CP024801.1_1575645_1577004_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|NZ_CP024801.1_1577008_1578085_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_3|NZ_CP024801.1_1578303_1578618_-	NA	NA|217aa|up_2|NZ_CP024801.1_1581037_1581688_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP024801.1_1581741_1581996_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP024801.1_1581995_1583126_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP024801.1_1583359_1585645_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP024801.1_1586340_1590093_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP024801.1_1590220_1590943_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP024801.1_1591089_1593717_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP024801.1_1593865_1595554_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP024801.1_1595550_1596174_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP024801.1_1596317_1600712_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP024801.1_1600712_1602362_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP024801.1_1602366_1603143_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP024801.1_1603216_1604401_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	7	2191772-2191895	6	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP024801.1_2200791_2200881_+	NA|471aa|up_9|NZ_CP024801.1_2181226_2182639_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP024801.1_2183194_2183404_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP024801.1_2183859_2184486_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP024801.1_2184506_2186609_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP024801.1_2186612_2187260_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP024801.1_2187323_2187992_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024801.1_2187988_2188774_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024801.1_2188777_2189590_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP024801.1_2189601_2191206_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024801.1_2191331_2191637_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024801.1_2192209_2193466_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024801.1_2193506_2194880_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024801.1_2195094_2195736_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024801.1_2195775_2196924_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024801.1_2197214_2198426_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024801.1_2198538_2199471_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024801.1_2199467_2200493_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024801.1_2200791_2200881_+	NA	NA|390aa|down_8|NZ_CP024801.1_2201046_2202216_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024801.1_2202361_2202943_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	8	2910702-2910793	7	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|503aa|up_9|NZ_CP024801.1_2898286_2899795_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP024801.1_2900216_2904179_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP024801.1_2904218_2904857_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP024801.1_2905144_2906236_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP024801.1_2906235_2906928_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP024801.1_2906939_2907326_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP024801.1_2907333_2908134_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP024801.1_2908143_2908734_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP024801.1_2908744_2909239_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP024801.1_2909259_2910588_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP024801.1_2911216_2911813_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP024801.1_2911833_2912061_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP024801.1_2912098_2913340_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP024801.1_2913631_2914891_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP024801.1_2915150_2916071_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP024801.1_2916070_2916376_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP024801.1_2916468_2917068_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP024801.1_2917064_2919611_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP024801.1_2919610_2920783_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP024801.1_2920912_2921605_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	9	3215545-3215689	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|94aa|up_6|NZ_CP024801.1_3210930_3211212_+,NA|201aa|up_4|NZ_CP024801.1_3211742_3212345_-,NA|56aa|up_3|NZ_CP024801.1_3212587_3212755_+,NA	NA|227aa|up_9|NZ_CP024801.1_3209896_3210577_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|up_8|NZ_CP024801.1_3210573_3210756_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_7|NZ_CP024801.1_3210728_3210920_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_6|NZ_CP024801.1_3210930_3211212_+	NA	NA|74aa|up_5|NZ_CP024801.1_3211310_3211532_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_4|NZ_CP024801.1_3211742_3212345_-	NA	NA|56aa|up_3|NZ_CP024801.1_3212587_3212755_+	NA	NA|73aa|up_2|NZ_CP024801.1_3212794_3213013_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP024801.1_3212990_3214061_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP024801.1_3214195_3215479_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP024801.1_3215712_3217974_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP024801.1_3218156_3219590_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP024801.1_3219665_3220718_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP024801.1_3220901_3221855_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP024801.1_3221895_3222891_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP024801.1_3223045_3223864_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP024801.1_3223864_3224923_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP024801.1_3224925_3225615_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP024801.1_3225614_3226388_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP024801.1_3226554_3226704_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	10	3726359-3726512	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|150aa|down_8|NZ_CP024801.1_3736089_3736539_-	NA|352aa|up_9|NZ_CP024801.1_3716184_3717240_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_8|NZ_CP024801.1_3717278_3717680_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_7|NZ_CP024801.1_3717737_3718982_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_6|NZ_CP024801.1_3719073_3719532_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_5|NZ_CP024801.1_3719792_3721250_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_4|NZ_CP024801.1_3721606_3721873_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_3|NZ_CP024801.1_3722179_3722632_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|NZ_CP024801.1_3722628_3723684_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_1|NZ_CP024801.1_3723754_3724525_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP024801.1_3724484_3726224_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP024801.1_3726541_3727039_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|NZ_CP024801.1_3727214_3727973_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|NZ_CP024801.1_3728264_3729005_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|NZ_CP024801.1_3728975_3729743_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|NZ_CP024801.1_3729948_3730527_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|NZ_CP024801.1_3730766_3733211_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|NZ_CP024801.1_3733253_3733727_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|NZ_CP024801.1_3733880_3734651_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|NZ_CP024801.1_3736089_3736539_-	NA	NA|451aa|down_9|NZ_CP024801.1_3741451_3742804_+	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]
GCF_002803905.1_ASM280390v1	NZ_CP024801	Escherichia coli strain AMA1167 chromosome, complete genome	11	3939806-3939938	4	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|126aa|up_9|NZ_CP024801.1_3930510_3930888_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP024801.1_3930894_3931737_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP024801.1_3931814_3932294_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP024801.1_3932485_3934348_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP024801.1_3934340_3934871_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP024801.1_3934978_3936310_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP024801.1_3936367_3936655_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP024801.1_3936651_3937938_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP024801.1_3937988_3938930_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP024801.1_3938944_3939715_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP024801.1_3940188_3941703_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP024801.1_3941733_3942876_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP024801.1_3943004_3944222_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP024801.1_3944295_3945849_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP024801.1_3945957_3946743_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP024801.1_3946748_3947339_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP024801.1_3947457_3947853_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP024801.1_3948113_3951335_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP024801.1_3951352_3952501_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP024801.1_3952956_3953778_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
