assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002796445.1_ASM279644v1	NZ_CP024889	Escherichia coli strain AR_0019 chromosome, complete genome	1	23823-23940	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	NA,NA|55aa|down_0|NZ_CP024889.1_24013_24178_-	NA|115aa|up_9|NZ_CP024889.1_11544_11889_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP024889.1_12077_13016_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP024889.1_13114_14104_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP024889.1_14125_15457_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP024889.1_15482_16691_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP024889.1_16724_19019_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP024889.1_19032_19422_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP024889.1_19493_20858_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP024889.1_21132_22464_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP024889.1_22491_23802_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP024889.1_24013_24178_-	NA	NA|234aa|down_1|NZ_CP024889.1_24200_24902_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP024889.1_25006_25903_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP024889.1_25953_26310_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP024889.1_26551_26917_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP024889.1_27209_28196_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP024889.1_28265_28748_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP024889.1_28843_29143_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP024889.1_29132_29537_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP024889.1_29539_29845_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_002796445.1_ASM279644v1	NZ_CP024889	Escherichia coli strain AR_0019 chromosome, complete genome	2	452336-452913	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,6	9	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	NA|121aa|up_3|NZ_CP024889.1_449232_449595_-,NA	NA|745aa|up_9|NZ_CP024889.1_442168_444403_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_CP024889.1_444480_444729_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_CP024889.1_444728_445064_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_CP024889.1_445134_445926_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP024889.1_446153_447791_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP024889.1_447878_449177_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|NZ_CP024889.1_449232_449595_-	NA	NA|302aa|up_2|NZ_CP024889.1_449630_450536_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP024889.1_450549_451152_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP024889.1_451324_451996_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|185aa|down_0|NZ_CP024889.1_453551_454106_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|122aa|down_1|NZ_CP024889.1_454145_454511_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP024889.1_454826_456626_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP024889.1_456625_458338_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP024889.1_458411_459146_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_5|NZ_CP024889.1_459410_459563_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|down_6|NZ_CP024889.1_459639_460752_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_7|NZ_CP024889.1_461382_462420_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_8|NZ_CP024889.1_462671_463580_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_9|NZ_CP024889.1_463581_465009_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional
GCF_002796445.1_ASM279644v1	NZ_CP024889	Escherichia coli strain AR_0019 chromosome, complete genome	3	460966-461301	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	NA,NA	NA|302aa|up_9|NZ_CP024889.1_449630_450536_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_8|NZ_CP024889.1_450549_451152_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_7|NZ_CP024889.1_451324_451996_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|185aa|up_6|NZ_CP024889.1_453551_454106_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|122aa|up_5|NZ_CP024889.1_454145_454511_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP024889.1_454826_456626_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP024889.1_456625_458338_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP024889.1_458411_459146_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP024889.1_459410_459563_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP024889.1_459639_460752_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP024889.1_461382_462420_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024889.1_462671_463580_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP024889.1_463581_465009_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024889.1_465008_465614_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024889.1_465663_465987_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024889.1_466180_466492_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024889.1_466510_467221_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024889.1_467220_467700_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP024889.1_467696_468746_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP024889.1_468726_469488_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002796445.1_ASM279644v1	NZ_CP024889	Escherichia coli strain AR_0019 chromosome, complete genome	4	1565465-1565588	4	CRISPRCasFinder	no	DEDDh	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	NA,NA|30aa|down_7|NZ_CP024889.1_1574484_1574574_+	NA|471aa|up_9|NZ_CP024889.1_1554918_1556331_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP024889.1_1556887_1557097_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP024889.1_1557552_1558179_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP024889.1_1558199_1560302_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP024889.1_1560305_1560953_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP024889.1_1561016_1561685_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024889.1_1561681_1562467_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024889.1_1562470_1563283_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP024889.1_1563294_1564899_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024889.1_1565024_1565330_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024889.1_1565902_1567159_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024889.1_1567199_1568573_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024889.1_1568787_1569429_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024889.1_1569468_1570617_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024889.1_1570907_1572119_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024889.1_1572231_1573164_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024889.1_1573160_1574186_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024889.1_1574484_1574574_+	NA	NA|390aa|down_8|NZ_CP024889.1_1574739_1575909_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024889.1_1576054_1576636_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002796445.1_ASM279644v1	NZ_CP024889	Escherichia coli strain AR_0019 chromosome, complete genome	5	2295893-2296280	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TCTAAGCTGCCTGTACGGCAGTGAAC	28,28,26	0	0	NA	NA	I-F:I-F:I-F	5,6,4	6	TypeI-F	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	NA,NA	NA|431aa|up_9|NZ_CP024889.1_2281210_2282503_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP024889.1_2282593_2283937_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP024889.1_2283947_2284559_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP024889.1_2284713_2288781_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP024889.1_2288915_2289410_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP024889.1_2289954_2290920_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP024889.1_2291042_2292809_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP024889.1_2292809_2294531_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP024889.1_2294572_2295277_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP024889.1_2295561_2295780_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|341aa|down_0|NZ_CP024889.1_2296350_2297373_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|down_1|NZ_CP024889.1_2297369_2298152_+	PRK09183, PRK09183, transposase/IS protein; Provisional	cas6f|185aa|down_2|NZ_CP024889.1_2299501_2300056_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_3|NZ_CP024889.1_2300066_2301068_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|down_4|NZ_CP024889.1_2301078_2302002_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|down_5|NZ_CP024889.1_2301998_2303306_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|down_6|NZ_CP024889.1_2303636_2306870_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|down_7|NZ_CP024889.1_2306866_2307850_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_8|NZ_CP024889.1_2309042_2311319_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_9|NZ_CP024889.1_2311349_2311670_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed
GCF_002796445.1_ASM279644v1	NZ_CP024889	Escherichia coli strain AR_0019 chromosome, complete genome	6	2298212-2298959	6,4,4	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,12,11	12	TypeI-F	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	NA,NA	NA|204aa|up_9|NZ_CP024889.1_2283947_2284559_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_8|NZ_CP024889.1_2284713_2288781_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_7|NZ_CP024889.1_2288915_2289410_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_6|NZ_CP024889.1_2289954_2290920_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_5|NZ_CP024889.1_2291042_2292809_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_4|NZ_CP024889.1_2292809_2294531_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_3|NZ_CP024889.1_2294572_2295277_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_2|NZ_CP024889.1_2295561_2295780_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|341aa|up_1|NZ_CP024889.1_2296350_2297373_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|up_0|NZ_CP024889.1_2297369_2298152_+	PRK09183, PRK09183, transposase/IS protein; Provisional	cas6f|185aa|down_0|NZ_CP024889.1_2299501_2300056_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_1|NZ_CP024889.1_2300066_2301068_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|down_2|NZ_CP024889.1_2301078_2302002_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|down_3|NZ_CP024889.1_2301998_2303306_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|down_4|NZ_CP024889.1_2303636_2306870_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|down_5|NZ_CP024889.1_2306866_2307850_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_6|NZ_CP024889.1_2309042_2311319_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_7|NZ_CP024889.1_2311349_2311670_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_8|NZ_CP024889.1_2311992_2312217_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_9|NZ_CP024889.1_2312289_2314236_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB
GCF_002796445.1_ASM279644v1	NZ_CP024889	Escherichia coli strain AR_0019 chromosome, complete genome	7	2308023-2308830	7,5,5	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	13,13,12	13	TypeI-F	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	NA,NA	NA|235aa|up_9|NZ_CP024889.1_2294572_2295277_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_8|NZ_CP024889.1_2295561_2295780_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|341aa|up_7|NZ_CP024889.1_2296350_2297373_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|261aa|up_6|NZ_CP024889.1_2297369_2298152_+	PRK09183, PRK09183, transposase/IS protein; Provisional	cas6f|185aa|up_5|NZ_CP024889.1_2299501_2300056_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|up_4|NZ_CP024889.1_2300066_2301068_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|up_3|NZ_CP024889.1_2301078_2302002_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|up_2|NZ_CP024889.1_2301998_2303306_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|up_1|NZ_CP024889.1_2303636_2306870_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|up_0|NZ_CP024889.1_2306866_2307850_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_0|NZ_CP024889.1_2309042_2311319_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP024889.1_2311349_2311670_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP024889.1_2311992_2312217_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP024889.1_2312289_2314236_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP024889.1_2314232_2315348_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP024889.1_2315498_2316455_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP024889.1_2316451_2318110_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP024889.1_2318535_2319231_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP024889.1_2319725_2320625_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP024889.1_2320768_2322421_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002796445.1_ASM279644v1	NZ_CP024889	Escherichia coli strain AR_0019 chromosome, complete genome	8	2439248-2439392	8	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	NA,NA	NA|330aa|up_9|NZ_CP024889.1_2427146_2428136_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP024889.1_2428532_2429441_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP024889.1_2429632_2431654_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP024889.1_2432232_2432910_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP024889.1_2432902_2433658_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP024889.1_2433644_2434799_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP024889.1_2434795_2435836_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP024889.1_2435922_2437212_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP024889.1_2437270_2437747_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP024889.1_2437898_2439182_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP024889.1_2439415_2441677_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP024889.1_2441859_2443293_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP024889.1_2443368_2444421_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP024889.1_2444604_2445558_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP024889.1_2445598_2446594_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP024889.1_2446748_2447567_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP024889.1_2447567_2448626_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP024889.1_2448628_2449318_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP024889.1_2449317_2450091_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP024889.1_2450257_2450407_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002796445.1_ASM279644v1	NZ_CP024889	Escherichia coli strain AR_0019 chromosome, complete genome	9	4116072-4116218	9	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	Orphan	TCTGTGTCGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACAACA	49	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,c2c9_V-U4,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,RT,WYL	NA|193aa|up_7|NZ_CP024889.1_4107441_4108020_+,NA|310aa|up_6|NZ_CP024889.1_4108110_4109040_+,NA	NA|198aa|up_9|NZ_CP024889.1_4106128_4106722_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_8|NZ_CP024889.1_4106866_4107319_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|193aa|up_7|NZ_CP024889.1_4107441_4108020_+	NA	NA|310aa|up_6|NZ_CP024889.1_4108110_4109040_+	NA	NA|335aa|up_5|NZ_CP024889.1_4109097_4110102_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP024889.1_4110263_4110680_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP024889.1_4110726_4111230_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP024889.1_4111422_4112619_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP024889.1_4112672_4115528_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP024889.1_4115527_4115971_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP024889.1_4116231_4117743_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP024889.1_4118009_4119110_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP024889.1_4119109_4120192_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP024889.1_4120352_4121855_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP024889.1_4121932_4122931_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP024889.1_4122997_4124317_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP024889.1_4124381_4125146_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP024889.1_4125169_4126201_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP024889.1_4126417_4126981_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP024889.1_4126984_4128004_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
