assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002788115.1_ASM278811v1	NZ_CP024862	Escherichia coli strain AR_0015, complete genome	1	1366513-1367148	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Type I-E	TTTATCCCCGCTGGCGCGGGGAACAC,CGATTTATCCCCGCTGGCGCGGGGAACAC,TTTATCCCCGCTGGCGCGGGGAACAC	26,29,26	0	0	NA	NA	I-E:I-E:I-E	10,9,9	10	TypeI-E	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP024862.1_1358383_1359145_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP024862.1_1359125_1360175_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP024862.1_1360171_1360651_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP024862.1_1360650_1361361_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP024862.1_1361379_1361691_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP024862.1_1361884_1362208_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP024862.1_1362257_1362863_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP024862.1_1362862_1364290_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP024862.1_1364291_1365200_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP024862.1_1365451_1366489_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP024862.1_1367244_1367538_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP024862.1_1367534_1368458_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP024862.1_1368454_1369105_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP024862.1_1369086_1369833_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP024862.1_1369843_1370899_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP024862.1_1370913_1371450_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP024862.1_1371446_1373009_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP024862.1_1373106_1375806_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP024862.1_1376000_1376153_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP024862.1_1376417_1377152_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_002788115.1_ASM278811v1	NZ_CP024862	Escherichia coli strain AR_0015, complete genome	2	1394286-1394619	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA,NA	NA|87aa|up_9|NZ_CP024862.1_1382757_1383018_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP024862.1_1383034_1383610_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP024862.1_1383744_1385093_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|287aa|up_6|NZ_CP024862.1_1385192_1386053_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP024862.1_1386049_1386829_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP024862.1_1386806_1388144_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP024862.1_1388237_1389692_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP024862.1_1389761_1390547_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP024862.1_1390865_1392143_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP024862.1_1392169_1393648_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP024862.1_1394957_1395629_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP024862.1_1395922_1396795_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP024862.1_1396854_1398153_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP024862.1_1398239_1399877_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP024862.1_1400104_1400896_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP024862.1_1400967_1401303_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP024862.1_1401302_1401551_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP024862.1_1401628_1403863_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP024862.1_1403910_1405212_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP024862.1_1405268_1408025_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_002788115.1_ASM278811v1	NZ_CP024862	Escherichia coli strain AR_0015, complete genome	3	3125825-3125974	3	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA|532aa|up_6|NZ_CP024862.1_3117131_3118727_+,NA	NA|238aa|up_9|NZ_CP024862.1_3115034_3115748_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP024862.1_3115818_3116412_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP024862.1_3116556_3117009_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|532aa|up_6|NZ_CP024862.1_3117131_3118727_+	NA	NA|335aa|up_5|NZ_CP024862.1_3118782_3119787_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP024862.1_3119948_3120365_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP024862.1_3120410_3120914_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP024862.1_3121106_3122303_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP024862.1_3122358_3125214_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP024862.1_3125213_3125657_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP024862.1_3126010_3127522_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP024862.1_3127788_3128889_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP024862.1_3128888_3129971_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP024862.1_3130131_3131634_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP024862.1_3131711_3132710_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP024862.1_3132776_3134096_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP024862.1_3134158_3134923_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP024862.1_3134946_3135978_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP024862.1_3136194_3136758_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP024862.1_3136761_3137781_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_002788115.1_ASM278811v1	NZ_CP024865	Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence	1	18856-18951	1	CRISPRCasFinder	no			Orphan	TATAGATTTATATAATTATATAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK,RT	NA|78aa|up_4|NZ_CP024865.1_16298_16532_-,NA|172aa|up_3|NZ_CP024865.1_16528_17044_-,NA|165aa|up_2|NZ_CP024865.1_17040_17535_-,NA|125aa|up_0|NZ_CP024865.1_18457_18832_+,NA|83aa|down_1|NZ_CP024865.1_19679_19928_+,NA|64aa|down_2|NZ_CP024865.1_21057_21249_+,NA|63aa|down_4|NZ_CP024865.1_22398_22587_-,NA|127aa|down_6|NZ_CP024865.1_23533_23914_-,NA|95aa|down_7|NZ_CP024865.1_24181_24466_+	NA|94aa|up_9|NZ_CP024865.1_13589_13871_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|356aa|up_8|NZ_CP024865.1_13948_15016_-	pfam12083, DUF3560, Domain of unknown function (DUF3560)	NA|126aa|up_7|NZ_CP024865.1_15184_15562_-	pfam03610, EIIA-man, PTS system fructose IIA component	NA|111aa|up_6|NZ_CP024865.1_15565_15898_-	pfam06356, DUF1064, Protein of unknown function (DUF1064)	NA|135aa|up_5|NZ_CP024865.1_15894_16299_-	pfam16786, RecA_dep_nuc, Recombination enhancement, RecA-dependent nuclease	NA|78aa|up_4|NZ_CP024865.1_16298_16532_-	NA	NA|172aa|up_3|NZ_CP024865.1_16528_17044_-	NA	NA|165aa|up_2|NZ_CP024865.1_17040_17535_-	NA	NA|219aa|up_1|NZ_CP024865.1_17708_18365_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|125aa|up_0|NZ_CP024865.1_18457_18832_+	NA	NA|218aa|down_0|NZ_CP024865.1_18982_19636_+	cd02042, ParAB_family, partition proteins ParAB family	NA|83aa|down_1|NZ_CP024865.1_19679_19928_+	NA	NA|64aa|down_2|NZ_CP024865.1_21057_21249_+	NA	NA|381aa|down_3|NZ_CP024865.1_21245_22388_+	pfam10543, ORF6N, ORF6N domain	NA|63aa|down_4|NZ_CP024865.1_22398_22587_-	NA	NA|91aa|down_5|NZ_CP024865.1_23197_23470_-	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|127aa|down_6|NZ_CP024865.1_23533_23914_-	NA	NA|95aa|down_7|NZ_CP024865.1_24181_24466_+	NA	NA|100aa|down_8|NZ_CP024865.1_24499_24799_-	pfam13744, HTH_37, Helix-turn-helix domain	NA|116aa|down_9|NZ_CP024865.1_24798_25146_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]
