assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002787645.1_ASM278764v1	NZ_CP024826	Escherichia coli strain CREC-544 chromosome, complete genome	1	1379417-1379529	1	PILER-CR	no		DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK	Orphan	TTTACCCGAATCAGGTAAA	19	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK	NA|106aa|up_4|NZ_CP024826.1_1376534_1376852_-,NA|90aa|up_3|NZ_CP024826.1_1376983_1377253_-,NA|101aa|down_1|NZ_CP024826.1_1380689_1380992_+,NA|36aa|down_3|NZ_CP024826.1_1381483_1381591_+,NA|310aa|down_6|NZ_CP024826.1_1383808_1384738_+,NA|34aa|down_7|NZ_CP024826.1_1384836_1384938_+	NA|53aa|up_9|NZ_CP024826.1_1373801_1373960_-	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|227aa|up_8|NZ_CP024826.1_1373956_1374637_-	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|262aa|up_7|NZ_CP024826.1_1374633_1375419_-	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|99aa|up_6|NZ_CP024826.1_1375424_1375721_-	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|69aa|up_5|NZ_CP024826.1_1375796_1376003_-	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|106aa|up_4|NZ_CP024826.1_1376534_1376852_-	NA	NA|90aa|up_3|NZ_CP024826.1_1376983_1377253_-	NA	NA|230aa|up_2|NZ_CP024826.1_1377333_1378023_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|77aa|up_1|NZ_CP024826.1_1378127_1378358_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|180aa|up_0|NZ_CP024826.1_1378439_1378979_+	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|234aa|down_0|NZ_CP024826.1_1379991_1380693_+	pfam06992, Phage_lambda_P, Replication protein P	NA|101aa|down_1|NZ_CP024826.1_1380689_1380992_+	NA	NA|111aa|down_2|NZ_CP024826.1_1381059_1381392_+	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|36aa|down_3|NZ_CP024826.1_1381483_1381591_+	NA	NA|509aa|down_4|NZ_CP024826.1_1381648_1383175_+	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|106aa|down_5|NZ_CP024826.1_1383286_1383604_+	pfam10548, P22_AR_C, P22AR C-terminal domain	NA|310aa|down_6|NZ_CP024826.1_1383808_1384738_+	NA	NA|34aa|down_7|NZ_CP024826.1_1384836_1384938_+	NA	NA|152aa|down_8|NZ_CP024826.1_1384934_1385390_+	PRK09741, PRK09741, hypothetical protein; Provisional	NA|57aa|down_9|NZ_CP024826.1_1385389_1385560_+	PRK09689, PRK09689, prophage protein NinE; Provisional
GCF_002787645.1_ASM278764v1	NZ_CP024826	Escherichia coli strain CREC-544 chromosome, complete genome	2	2365043-2365166	1	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK	NA,NA|30aa|down_7|NZ_CP024826.1_2374062_2374152_+	NA|471aa|up_9|NZ_CP024826.1_2354496_2355909_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP024826.1_2356465_2356675_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP024826.1_2357130_2357757_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP024826.1_2357777_2359880_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP024826.1_2359883_2360531_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP024826.1_2360594_2361263_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024826.1_2361259_2362045_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024826.1_2362048_2362861_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP024826.1_2362866_2364477_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024826.1_2364602_2364908_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024826.1_2365480_2366737_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024826.1_2366777_2368151_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024826.1_2368365_2369007_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024826.1_2369046_2370195_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024826.1_2370485_2371697_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024826.1_2371809_2372742_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024826.1_2372738_2373764_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024826.1_2374062_2374152_+	NA	NA|390aa|down_8|NZ_CP024826.1_2374317_2375487_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024826.1_2375632_2376214_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002787645.1_ASM278764v1	NZ_CP024826	Escherichia coli strain CREC-544 chromosome, complete genome	3	2976793-2976884	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK	NA|70aa|up_9|NZ_CP024826.1_2966043_2966253_-,NA	NA|70aa|up_9|NZ_CP024826.1_2966043_2966253_-	NA	NA|1321aa|up_8|NZ_CP024826.1_2966307_2970270_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP024826.1_2970309_2970948_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP024826.1_2971235_2972327_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP024826.1_2972326_2973019_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP024826.1_2973030_2973417_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP024826.1_2973424_2974225_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP024826.1_2974234_2974825_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP024826.1_2974835_2975330_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP024826.1_2975350_2976679_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP024826.1_2977307_2977904_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP024826.1_2977924_2978152_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP024826.1_2978189_2979431_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP024826.1_2979723_2980980_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP024826.1_2981239_2982160_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP024826.1_2982159_2982465_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP024826.1_2982616_2983216_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP024826.1_2983212_2985759_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP024826.1_2985758_2986931_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP024826.1_2987060_2987753_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002787645.1_ASM278764v1	NZ_CP024826	Escherichia coli strain CREC-544 chromosome, complete genome	4	3621164-3621271	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK	Orphan	GCAATCTGCGCTTGCAGGCTGTCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK	NA|101aa|up_9|NZ_CP024826.1_3614147_3614450_-,NA|196aa|up_8|NZ_CP024826.1_3614449_3615037_-,NA|151aa|up_6|NZ_CP024826.1_3617202_3617655_-,NA|188aa|up_3|NZ_CP024826.1_3619258_3619822_-,NA|130aa|up_2|NZ_CP024826.1_3619796_3620186_-,NA|185aa|up_1|NZ_CP024826.1_3620172_3620727_-,NA|168aa|down_1|NZ_CP024826.1_3622458_3622962_-,NA|541aa|down_5|NZ_CP024826.1_3626304_3627927_-,NA|152aa|down_7|NZ_CP024826.1_3628503_3628959_+,NA|62aa|down_8|NZ_CP024826.1_3629096_3629282_-,NA|131aa|down_9|NZ_CP024826.1_3629425_3629818_-	NA|101aa|up_9|NZ_CP024826.1_3614147_3614450_-	NA	NA|196aa|up_8|NZ_CP024826.1_3614449_3615037_-	NA	NA|663aa|up_7|NZ_CP024826.1_3615036_3617025_-	PHA02564, V, virion protein; Provisional	NA|151aa|up_6|NZ_CP024826.1_3617202_3617655_-	NA	NA|147aa|up_5|NZ_CP024826.1_3617658_3618099_-	pfam11681, DUF3277, Protein of unknown function (DUF3277)	NA|382aa|up_4|NZ_CP024826.1_3618109_3619255_-	pfam11863, DUF3383, Protein of unknown function (DUF3383)	NA|188aa|up_3|NZ_CP024826.1_3619258_3619822_-	NA	NA|130aa|up_2|NZ_CP024826.1_3619796_3620186_-	NA	NA|185aa|up_1|NZ_CP024826.1_3620172_3620727_-	NA	NA|136aa|up_0|NZ_CP024826.1_3620723_3621131_-	pfam13262, DUF4054, Protein of unknown function (DUF4054)	NA|314aa|down_0|NZ_CP024826.1_3621505_3622447_-	pfam09950, DUF2184, Uncharacterized protein conserved in bacteria (DUF2184)	NA|168aa|down_1|NZ_CP024826.1_3622458_3622962_-	NA	NA|411aa|down_2|NZ_CP024826.1_3622966_3624199_-	pfam09979, DUF2213, Uncharacterized protein conserved in bacteria (DUF2213)	NA|245aa|down_3|NZ_CP024826.1_3624213_3624948_-	COG2369, COG2369, Uncharacterized protein, homolog of phage Mu protein gp30 [Function unknown]	NA|489aa|down_4|NZ_CP024826.1_3624838_3626305_-	pfam06381, DUF1073, Protein of unknown function (DUF1073)	NA|541aa|down_5|NZ_CP024826.1_3626304_3627927_-	NA	NA|184aa|down_6|NZ_CP024826.1_3627929_3628481_-	pfam03592, Terminase_2, Terminase small subunit	NA|152aa|down_7|NZ_CP024826.1_3628503_3628959_+	NA	NA|62aa|down_8|NZ_CP024826.1_3629096_3629282_-	NA	NA|131aa|down_9|NZ_CP024826.1_3629425_3629818_-	NA
