assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002787545.1_ASM278754v1	NZ_CP024815	Escherichia coli strain CREC-629 chromosome, complete genome	1	69132-69281	1	CRISPRCasFinder	no		RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA|120aa|up_9|NZ_CP024815.1_58343_58703_-,NA|195aa|up_8|NZ_CP024815.1_58695_59280_-,NA|213aa|up_6|NZ_CP024815.1_59949_60588_-,NA	NA|120aa|up_9|NZ_CP024815.1_58343_58703_-	NA	NA|195aa|up_8|NZ_CP024815.1_58695_59280_-	NA	NA|77aa|up_7|NZ_CP024815.1_59341_59572_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|213aa|up_6|NZ_CP024815.1_59949_60588_-	NA	NA|421aa|up_5|NZ_CP024815.1_60617_61880_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP024815.1_62324_63344_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP024815.1_63471_64974_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP024815.1_65134_66217_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP024815.1_66216_67317_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP024815.1_67583_69095_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP024815.1_69448_69892_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP024815.1_69891_72747_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP024815.1_72798_73986_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP024815.1_74178_74682_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP024815.1_74727_75144_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP024815.1_75305_76310_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP024815.1_78232_78685_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP024815.1_78829_79423_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP024815.1_79493_80207_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP024815.1_80337_80733_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
GCF_002787545.1_ASM278754v1	NZ_CP024815	Escherichia coli strain CREC-629 chromosome, complete genome	2	1769419-1769753	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,30,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA|47aa|up_1|NZ_CP024815.1_1768128_1768269_-,NA	NA|434aa|up_9|NZ_CP024815.1_1758825_1760127_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP024815.1_1760174_1762409_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP024815.1_1762486_1762735_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP024815.1_1762734_1763070_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP024815.1_1763140_1763932_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP024815.1_1764159_1765797_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP024815.1_1765884_1767183_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP024815.1_1767242_1768115_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP024815.1_1768128_1768269_-	NA	NA|224aa|up_0|NZ_CP024815.1_1768407_1769079_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP024815.1_1770390_1771869_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP024815.1_1771895_1773173_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP024815.1_1773491_1774277_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP024815.1_1774346_1775801_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP024815.1_1775894_1777232_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP024815.1_1777209_1777989_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP024815.1_1777985_1778846_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP024815.1_1778993_1779569_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP024815.1_1779585_1779846_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP024815.1_1779836_1781108_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002787545.1_ASM278754v1	NZ_CP024815	Escherichia coli strain CREC-629 chromosome, complete genome	3	1796078-1796779	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,11,11	11	TypeI-E	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|571aa|up_9|NZ_CP024815.1_1783665_1785378_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP024815.1_1785452_1786187_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP024815.1_1786545_1789212_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|495aa|up_6|NZ_CP024815.1_1790426_1791911_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP024815.1_1791903_1792386_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP024815.1_1792398_1793490_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP024815.1_1793492_1794167_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP024815.1_1794153_1794753_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP024815.1_1794768_1795686_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP024815.1_1795687_1795972_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP024815.1_1796861_1797899_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP024815.1_1798150_1799059_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP024815.1_1799060_1800488_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP024815.1_1800487_1801093_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP024815.1_1801142_1801466_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP024815.1_1801659_1801971_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP024815.1_1801989_1802700_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP024815.1_1802699_1803179_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP024815.1_1803175_1804225_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP024815.1_1804205_1804967_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002787545.1_ASM278754v1	NZ_CP024815	Escherichia coli strain CREC-629 chromosome, complete genome	4	2291971-2292088	4	CRISPRCasFinder	no		RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|62aa|up_9|NZ_CP024815.1_2281256_2281442_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP024815.1_2281454_2282354_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP024815.1_2282546_2283737_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP024815.1_2283733_2284993_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP024815.1_2284982_2286611_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP024815.1_2286883_2288242_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP024815.1_2288246_2289323_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP024815.1_2289785_2290436_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP024815.1_2290489_2290744_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP024815.1_2290743_2291874_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP024815.1_2292107_2294393_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP024815.1_2295088_2298841_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP024815.1_2298968_2299691_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP024815.1_2299837_2302465_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP024815.1_2302613_2304302_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP024815.1_2304298_2304922_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP024815.1_2305065_2309460_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP024815.1_2309460_2311110_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP024815.1_2311114_2311891_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP024815.1_2311964_2313149_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_002787545.1_ASM278754v1	NZ_CP024815	Escherichia coli strain CREC-629 chromosome, complete genome	5	2922671-2922794	5	CRISPRCasFinder	no	DEDDh	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA|30aa|down_7|NZ_CP024815.1_2931690_2931780_+	NA|471aa|up_9|NZ_CP024815.1_2912125_2913538_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP024815.1_2914094_2914304_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP024815.1_2914758_2915385_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP024815.1_2915405_2917508_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP024815.1_2917511_2918159_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP024815.1_2918222_2918891_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024815.1_2918887_2919673_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024815.1_2919676_2920489_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP024815.1_2920500_2922105_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024815.1_2922230_2922536_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024815.1_2923108_2924365_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024815.1_2924405_2925779_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024815.1_2925993_2926635_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024815.1_2926674_2927823_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024815.1_2928113_2929325_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024815.1_2929437_2930370_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024815.1_2930366_2931392_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024815.1_2931690_2931780_+	NA	NA|390aa|down_8|NZ_CP024815.1_2931945_2933115_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024815.1_2933349_2933931_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002787545.1_ASM278754v1	NZ_CP024815	Escherichia coli strain CREC-629 chromosome, complete genome	6	3621745-3621836	6	CRISPRCasFinder	no		RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA|70aa|up_9|NZ_CP024815.1_3610821_3611031_-,NA	NA|70aa|up_9|NZ_CP024815.1_3610821_3611031_-	NA	NA|1321aa|up_8|NZ_CP024815.1_3611085_3615048_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP024815.1_3615087_3615726_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP024815.1_3616013_3617105_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP024815.1_3617104_3617797_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP024815.1_3617808_3618195_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP024815.1_3618202_3619003_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP024815.1_3619012_3619603_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP024815.1_3619613_3620108_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP024815.1_3620128_3621457_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP024815.1_3622259_3622856_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP024815.1_3622876_3623104_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP024815.1_3623141_3624383_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP024815.1_3624675_3625932_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP024815.1_3626192_3627113_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP024815.1_3627112_3627418_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP024815.1_3627569_3628169_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP024815.1_3628165_3630712_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP024815.1_3630711_3631884_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP024815.1_3632013_3632706_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002787545.1_ASM278754v1	NZ_CP024815	Escherichia coli strain CREC-629 chromosome, complete genome	7	3946371-3946515	7	CRISPRCasFinder	no		RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|330aa|up_9|NZ_CP024815.1_3934269_3935259_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP024815.1_3935655_3936564_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP024815.1_3936755_3938777_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP024815.1_3939355_3940033_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP024815.1_3940025_3940781_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP024815.1_3940767_3941922_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP024815.1_3941918_3942959_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP024815.1_3943045_3944335_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP024815.1_3944393_3944870_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP024815.1_3945021_3946305_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP024815.1_3946538_3948800_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP024815.1_3948982_3950416_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP024815.1_3950491_3951544_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP024815.1_3951727_3952681_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP024815.1_3952721_3953717_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP024815.1_3953871_3954690_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP024815.1_3954690_3955749_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP024815.1_3955751_3956441_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP024815.1_3956440_3957214_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP024815.1_3957380_3957530_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002787545.1_ASM278754v1	NZ_CP024815	Escherichia coli strain CREC-629 chromosome, complete genome	8	4195047-4195143	8	CRISPRCasFinder	no		RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA	NA|231aa|up_9|NZ_CP024815.1_4186842_4187535_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP024815.1_4187754_4188297_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP024815.1_4188767_4189634_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP024815.1_4189635_4189848_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP024815.1_4189955_4190477_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP024815.1_4190512_4191898_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP024815.1_4192071_4192566_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP024815.1_4192568_4193291_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP024815.1_4193408_4193918_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP024815.1_4193914_4194982_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP024815.1_4195176_4196070_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP024815.1_4196066_4196882_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP024815.1_4196892_4198152_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP024815.1_4198161_4199829_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP024815.1_4200145_4201195_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP024815.1_4201216_4202452_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP024815.1_4202462_4203248_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP024815.1_4203475_4204621_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP024815.1_4204642_4205944_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP024815.1_4206000_4207362_-	PRK08044, PRK08044, allantoinase AllB
GCF_002787545.1_ASM278754v1	NZ_CP024815	Escherichia coli strain CREC-629 chromosome, complete genome	9	4335185-4335329	9	CRISPRCasFinder	no		RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	NA,NA|28aa|down_2|NZ_CP024815.1_4337374_4337458_-	NA|357aa|up_9|NZ_CP024815.1_4320323_4321394_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP024815.1_4321486_4322068_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP024815.1_4322072_4323890_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP024815.1_4324045_4325419_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP024815.1_4325494_4326814_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP024815.1_4327220_4328516_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP024815.1_4328573_4329263_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP024815.1_4329452_4330655_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP024815.1_4330651_4333798_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP024815.1_4333923_4335108_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP024815.1_4335352_4336261_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP024815.1_4336385_4337297_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP024815.1_4337374_4337458_-	NA	NA|95aa|down_3|NZ_CP024815.1_4337943_4338228_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP024815.1_4338299_4338977_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP024815.1_4339234_4339426_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP024815.1_4339475_4340000_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP024815.1_4340182_4340641_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP024815.1_4340760_4341570_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP024815.1_4341586_4342702_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
