The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP024859	Escherichia coli strain AR_0014, complete genome	4839565	539871	595914	4839565	terminase,capsid,head,portal,holin,tail,integrase,protease,tRNA	Escherichia_phage(44.44%)	62	548063:548077	596016:596030
WP_001297484.1|539871_540978_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_001297479.1|541013_541655_+	high frequency lysogenization protein HflD	NA	NA	NA	NA	NA
WP_000423742.1|541658_543029_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	44.9	1.2e-107
WP_001265471.1|543197_543869_+	two-component system response regulator PhoP	NA	NA	NA	NA	NA
WP_000735412.1|543868_545329_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA	NA
WP_000456506.1|545404_546526_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_000359434.1|546574_547801_-	peptidase T	NA	NA	NA	NA	NA
WP_000531594.1|548050_549187_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	39.8	5.5e-29
548063:548077	attL	AAAAAATTGAATAAA	NA	NA	NA	NA
WP_000799406.1|549170_550034_+	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	28.7	6.7e-11
WP_000241001.1|550588_551257_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_042047081.1|551494_552025_-	chaperone of endosialidase	NA	A0A2D1UII2	Escherichia_phage	85.2	2.5e-69
WP_032143699.1|552758_553130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001189123.1|553438_554947_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_001233546.1|558900_559500_-	Ail/Lom family outer membrane beta-barrel protein	NA	H6WZM8	Escherichia_phage	95.0	1.6e-107
WP_000515345.1|559567_563047_-	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	89.9	0.0e+00
WP_000090843.1|563107_563716_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	94.1	1.9e-100
WP_001333568.1|563652_564396_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	97.2	4.5e-149
WP_001152457.1|564401_565100_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	97.0	3.4e-130
WP_001330090.1|565099_565456_-|tail	tail protein	tail	A0A0P0ZDL9	Stx2-converting_phage	66.7	2.8e-40
WP_000224003.1|565433_568661_-|tail	phage tail tape measure protein	tail	A0A1B5FPE2	Escherichia_phage	95.0	0.0e+00
WP_077253127.1|568707_568968_-	DUF4035 domain-containing protein	NA	A0A1B5FP87	Escherichia_phage	95.3	2.3e-39
WP_001324129.1|569009_569396_-|tail	tail assembly protein	tail	A0A1B5FP91	Escherichia_phage	100.0	8.9e-64
WP_000097535.1|569395_570100_-	hypothetical protein	NA	A0A1B5FP82	Escherichia_phage	92.7	1.4e-112
WP_001206700.1|570160_570505_-	DUF3168 domain-containing protein	NA	A0A1B5FP84	Escherichia_phage	96.5	5.1e-55
WP_000968644.1|570501_570951_-	HK97 gp10 family phage protein	NA	S4TR46	Salmonella_phage	81.2	6.1e-64
WP_001147814.1|570947_571286_-|head	phage head closure protein	head	A0A1B5FP90	Escherichia_phage	90.2	7.5e-51
WP_000719064.1|571294_571612_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1W6JNZ5	Morganella_phage	49.5	5.3e-22
WP_000766109.1|571688_572906_-|capsid	phage major capsid protein	capsid	A0A1W6JP20	Morganella_phage	71.6	5.9e-162
WP_000999828.1|572920_573520_-|head,protease	HK97 family phage prohead protease	head,protease	Q8SBH9	Shigella_phage	81.0	1.9e-89
WP_000923134.1|573512_574739_-|portal	phage portal protein	portal	Q8SBI0	Shigella_phage	83.3	3.7e-204
WP_001140892.1|574886_576644_-|terminase	terminase large subunit	terminase	A0A1B5FP96	Escherichia_phage	99.3	0.0e+00
WP_001333563.1|576643_577126_-|terminase	phage terminase small subunit P27 family	terminase	A0A1B5FPA0	Escherichia_phage	98.1	8.7e-85
WP_001135104.1|577273_577624_-	HNH endonuclease	NA	A0A1B5FP94	Escherichia_phage	96.6	8.0e-64
WP_000738421.1|578149_578443_+	increased serum survival lipoprotein Iss	NA	K7PL54	Enterobacteria_phage	90.7	5.9e-44
WP_075202333.1|578533_578716_-	hypothetical protein	NA	A0A0P0ZE50	Stx2-converting_phage	77.0	2.2e-17
WP_000992097.1|578932_579466_-	lysozyme	NA	Q08J98	Stx2-converting_phage	93.2	1.5e-98
WP_000193264.1|579529_579880_-	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	94.0	1.4e-36
WP_000372595.1|579884_580100_-|holin	holin	holin	A0A2R2Z340	Escherichia_phage	98.6	3.4e-33
WP_000874243.1|580407_580596_-	DUF1737 domain-containing protein	NA	H6WZJ9	Escherichia_phage	95.2	7.2e-27
WP_001333560.1|580856_581192_+	anti-adapter protein IraM	NA	Q8HAJ1	Enterobacteria_phage	74.8	1.4e-44
WP_001333559.1|581262_581475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_106104550.1|581963_582050_-	DUF3927 family protein	NA	NA	NA	NA	NA
WP_000762879.1|582444_583266_-	antitermination protein	NA	K7P7B9	Enterobacteria_phage	58.2	5.1e-77
WP_000139999.1|583262_583643_-	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	63.6	1.3e-35
WP_001221526.1|583643_584702_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	48.0	7.5e-89
WP_032155008.1|584703_584982_-	hypothetical protein	NA	A0A077KB22	Edwardsiella_phage	37.1	6.1e-06
WP_001013636.1|585149_585362_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	96.9	8.9e-26
WP_001224662.1|586396_586579_-	hypothetical protein	NA	A0A2R2Z308	Escherichia_phage	100.0	1.4e-27
WP_000403785.1|586672_587029_-	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	99.2	1.8e-58
WP_001151150.1|587086_587509_-	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	90.6	2.6e-64
WP_001262390.1|587549_588620_-	hypothetical protein	NA	A0A088CD36	Shigella_phage	56.6	2.6e-52
WP_000693850.1|588691_589117_-	Rha family transcriptional regulator	NA	NA	NA	NA	NA
WP_000747951.1|589100_589343_-	hypothetical protein	NA	H9C161	Pectobacterium_phage	55.8	4.8e-07
WP_001420344.1|589734_590073_+	peptidase S24	NA	H9C160	Pectobacterium_phage	32.0	2.5e-06
WP_001092153.1|590504_590705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001171946.1|590797_591016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001517906.1|590980_591184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000854558.1|591584_591773_+	cell division inhibition protein DicB	NA	NA	NA	NA	NA
WP_001070255.1|591769_591961_+	DUF1482 family protein	NA	NA	NA	NA	NA
WP_000102136.1|592054_594496_+	exonuclease	NA	V5UQJ3	Shigella_phage	46.9	3.1e-114
WP_000003742.1|594557_594827_+	excisionase	NA	NA	NA	NA	NA
WP_000074971.1|594795_595914_+|integrase	tyrosine-type recombinase/integrase	integrase	Q77Z04	Phage_21	44.4	1.6e-84
596016:596030	attR	AAAAAATTGAATAAA	NA	NA	NA	NA
>prophage 2
NZ_CP024859	Escherichia coli strain AR_0014, complete genome	4839565	1503297	1566343	4839565	plate,integrase,transposase	Enterobacteria_phage(18.18%)	54	1519479:1519494	1550355:1550370
WP_000080200.1|1503297_1504911_+|transposase	IS66-like element ISEc23 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	63.6	1.8e-182
WP_001013303.1|1505226_1505652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032143699.1|1507104_1507476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001189123.1|1507784_1509293_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_000597528.1|1510458_1510809_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_000057773.1|1510821_1512414_-	autoinducer-2 kinase	NA	NA	NA	NA	NA
WP_024176379.1|1512513_1513470_-	transcriptional regulator LsrR	NA	NA	NA	NA	NA
WP_001178466.1|1513719_1515273_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	NA	A0A2H4PQG7	Staphylococcus_phage	22.2	2.9e-12
WP_000911138.1|1515266_1516313_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA	NA
WP_000197460.1|1516312_1517311_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA	NA
WP_000155278.1|1517337_1518360_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA	NA
WP_000774142.1|1518388_1519264_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA	NA
WP_000558519.1|1519312_1519603_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA	NA
1519479:1519494	attL	ATAAAGATGAAGCCGC	NA	NA	NA	NA
WP_001081495.1|1519613_1520357_+	epimerase	NA	NA	NA	NA	NA
WP_001333700.1|1520731_1520989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000920172.1|1523613_1524684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000132880.1|1524661_1526368_-	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_001087767.1|1526360_1527569_-	N-6 DNA methylase	NA	NA	NA	NA	NA
WP_000772656.1|1527810_1529019_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	56.5	7.7e-130
WP_000893278.1|1529372_1530626_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.2	9.8e-96
WP_001285288.1|1530637_1531741_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.1e-61
WP_000749867.1|1532028_1533084_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	61.1	1.6e-118
WP_000174677.1|1533122_1533524_-	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
WP_000189532.1|1533581_1534826_-	esterase FrsA	NA	NA	NA	NA	NA
WP_001291990.1|1534917_1535376_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001292994.1|1535636_1537094_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
WP_001326471.1|1537150_1537687_-	peptide chain release factor H	NA	NA	NA	NA	NA
WP_001295202.1|1537619_1537886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001059892.1|1538191_1538644_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001263489.1|1538653_1539052_-	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA	NA
WP_000554758.1|1539054_1539348_-	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA	NA
WP_001226164.1|1539399_1540455_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_001333407.1|1540525_1541296_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA	NA
WP_001334802.1|1541255_1542995_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA	NA
WP_000006255.1|1543218_1543716_-|transposase	REP-associated tyrosine transposase RayT	transposase	NA	NA	NA	NA
WP_000056849.1|1543891_1544641_-	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	38.5	9.0e-20
WP_000729703.1|1544850_1545111_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA	NA
WP_000615983.1|1545113_1545392_+	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA	NA
WP_001225679.1|1545547_1546288_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000333380.1|1546258_1547026_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000284050.1|1547231_1547810_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	32.0	1.1e-14
WP_000973083.1|1548049_1550494_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
1550355:1550370	attR	ATAAAGATGAAGCCGC	NA	NA	NA	NA
WP_000532698.1|1550536_1551010_-	C-lysozyme inhibitor	NA	NA	NA	NA	NA
WP_001118036.1|1551163_1551934_+	2-oxoglutaramate amidase	NA	NA	NA	NA	NA
WP_000420818.1|1551974_1553111_-|transposase	ISAs1 family transposase	transposase	NA	NA	NA	NA
WP_001101839.1|1553541_1553934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000508724.1|1553911_1558144_-	RHS repeat protein	NA	A0A2H4JHK7	uncultured_Caudovirales_phage	43.1	6.4e-22
WP_032329316.1|1558219_1560361_-	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.0	2.4e-25
WP_001142958.1|1560570_1561089_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000037397.1|1561783_1562284_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000123970.1|1562318_1562543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000056989.1|1562593_1564069_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000611744.1|1564075_1564489_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_000393852.1|1564492_1566343_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
>prophage 3
NZ_CP024859	Escherichia coli strain AR_0014, complete genome	4839565	2184879	2242423	4839565	terminase,lysis,portal,integrase,tail,protease,tRNA	Enterobacteria_phage(48.15%)	64	2174124:2174138	2212289:2212303
2174124:2174138	attL	GGTGATCAGCAGCGG	NA	NA	NA	NA
WP_000414651.1|2184879_2186127_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_000168305.1|2186285_2186822_-	single-stranded DNA-binding protein SSB1	NA	A0A0A0P1Q9	Enterobacteria_phage	78.7	1.1e-56
WP_000357740.1|2187075_2189898_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.1	0.0e+00
WP_000155657.1|2189932_2190289_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_000270375.1|2190292_2190709_-	YjbQ family protein	NA	NA	NA	NA	NA
WP_001226928.1|2190819_2191533_-	acid phosphatase AphA	NA	NA	NA	NA	NA
WP_001321562.1|2191934_2192138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000486985.1|2192639_2193833_-	aromatic amino acid transaminase	NA	NA	NA	NA	NA
WP_001147328.1|2194085_2195165_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	27.9	5.2e-29
WP_000918363.1|2195217_2196633_-	replicative DNA helicase	NA	O80281	Escherichia_phage	78.3	4.8e-200
WP_000235508.1|2196715_2197699_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_000891404.1|2197864_2198107_-	envelope stress response protein PspG	NA	NA	NA	NA	NA
WP_000543828.1|2198240_2199278_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_021557428.1|2199366_2200464_+|integrase	site-specific integrase	integrase	S5MDN5	Escherichia_phage	99.7	1.1e-212
WP_001217553.1|2200525_2200774_+	DinI family protein	NA	K7PLW4	Enterobacteria_phage	100.0	1.8e-38
WP_100183788.1|2200889_2201018_-|tail	phage tail protein	tail	K7PMH7	Enterobacteria_phage	89.7	1.5e-12
WP_100183764.1|2201072_2204846_-	peptidase S74	NA	A0A2D1UII2	Escherichia_phage	85.1	0.0e+00
WP_032329899.1|2204910_2205510_-	Ail/Lom family outer membrane beta-barrel protein	NA	K7PJP9	Enterobacteria_phage	98.5	1.5e-110
WP_061357298.1|2205580_2209078_-	host specificity protein J	NA	A0A291AWT4	Escherichia_phage	97.3	0.0e+00
WP_001399694.1|2209138_2209786_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	96.7	1.2e-110
WP_032147298.1|2209683_2210427_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	95.9	2.8e-146
WP_001537716.1|2210432_2211131_-|tail	phage minor tail protein L	tail	A5LH40	Enterobacteria_phage	98.7	5.6e-133
WP_000447253.1|2211140_2211470_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	100.0	1.7e-60
WP_061357299.1|2211469_2214526_-|tail	phage tail tape measure protein	tail	A5LH38	Enterobacteria_phage	97.7	0.0e+00
2212289:2212303	attR	CCGCTGCTGATCACC	NA	NA	NA	NA
WP_001161009.1|2214497_2214827_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	100.0	7.6e-56
WP_001372042.1|2214835_2215222_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	100.0	4.3e-66
WP_053290591.1|2215282_2216026_-|tail	phage tail protein	tail	A5LH35	Enterobacteria_phage	99.2	1.7e-132
WP_001079398.1|2216037_2216439_-|tail	tail protein	tail	A0A291AWY2	Escherichia_phage	100.0	8.3e-73
WP_000677106.1|2216435_2217014_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	100.0	4.2e-102
WP_001283144.1|2217025_2217301_-	DNA breaking-rejoining protein	NA	K7PH43	Enterobacteria_phage	98.9	8.6e-45
WP_001097050.1|2217293_2217617_-	DUF2190 family protein	NA	A0A291AWX2	Escherichia_phage	100.0	8.5e-52
WP_001136590.1|2217703_2219731_-|protease	Clp protease ClpP	protease	A5LH30	Enterobacteria_phage	99.5	0.0e+00
WP_000985945.1|2219675_2221184_-|portal	phage portal protein	portal	A0A291AWU2	Escherichia_phage	99.8	7.8e-289
WP_001072975.1|2221183_2221396_-	hypothetical protein	NA	A5LH28	Enterobacteria_phage	100.0	1.1e-31
WP_000934119.1|2221392_2223495_-|terminase	phage terminase large subunit family protein	terminase	K7PH40	Enterobacteria_phage	98.9	0.0e+00
WP_000373425.1|2223494_2223989_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	100.0	9.9e-84
WP_001139680.1|2224664_2224817_-	hypothetical protein	NA	K7PKL2	Enterobacteria_phage	100.0	1.2e-21
WP_001442864.1|2224804_2225272_-|lysis	lysis protein	lysis	A0A291AWW3	Escherichia_phage	99.4	2.9e-77
WP_001135251.1|2225268_2225766_-	lysozyme	NA	A0A291AWW2	Escherichia_phage	99.4	1.7e-91
WP_000839596.1|2225765_2225981_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_000799656.1|2226048_2227101_-	site-specific DNA-methyltransferase	NA	A5LH81	Enterobacteria_phage	100.0	2.7e-208
WP_001355891.1|2227250_2227445_-	hypothetical protein	NA	Q8SBE3	Shigella_phage	100.0	1.8e-28
WP_001564338.1|2227693_2228854_+	DUF262 domain-containing protein	NA	A0A0R6PJX3	Moraxella_phage	37.0	6.4e-57
WP_001564336.1|2228856_2229546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001025377.1|2229514_2230555_-	DNA cytosine methyltransferase	NA	A0A0R6PG08	Moraxella_phage	50.9	8.7e-98
WP_021534260.1|2230634_2230988_-	hypothetical protein	NA	A0A0P0ZCW0	Stx2-converting_phage	85.5	5.8e-54
WP_024172633.1|2231005_2231995_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	99.1	1.8e-193
WP_033547789.1|2232002_2232812_-	KilA-N domain-containing protein	NA	A0A291AWU7	Escherichia_phage	99.6	6.9e-151
WP_000767133.1|2232831_2233221_-	RusA family crossover junction endodeoxyribonuclease	NA	A5LH74	Enterobacteria_phage	99.2	1.6e-68
WP_000210154.1|2233217_2233544_-	LexA family transcriptional regulator	NA	A0A0N7KZF7	Stx2-converting_phage	99.1	2.7e-53
WP_072310844.1|2233540_2233870_-	hypothetical protein	NA	A0A291AWV6	Escherichia_phage	98.1	8.7e-52
WP_033547788.1|2233872_2234814_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	92.7	1.1e-139
WP_001250269.1|2234803_2234983_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	68.5	7.8e-15
WP_000526668.1|2235158_2235716_-	protein YmfL	NA	S5FXP0	Shigella_phage	94.6	1.7e-95
WP_001191669.1|2235708_2235969_-	helix-turn-helix transcriptional regulator	NA	K7PJQ8	Enterobacteria_phage	100.0	5.4e-41
WP_001020632.1|2236066_2236759_+	helix-turn-helix transcriptional regulator	NA	S5FUZ3	Shigella_phage	96.5	6.4e-121
WP_072646438.1|2237614_2238151_+	5'-deoxynucleotidase	NA	S5MW55	Escherichia_phage	98.3	4.1e-99
WP_069067673.1|2238141_2238621_+	hypothetical protein	NA	A0A222YY85	Escherichia_phage	76.9	2.7e-38
WP_077884915.1|2238645_2239113_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	77.7	1.4e-66
WP_069067675.1|2239099_2239786_+	ead/Ea22-like family protein	NA	K7P6J7	Enterobacteria_phage	58.0	1.3e-57
WP_069067676.1|2239787_2240582_+	DUF551 domain-containing protein	NA	A0A0N7C063	Escherichia_phage	78.8	4.4e-49
WP_042029621.1|2240581_2241154_+	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	98.4	1.8e-108
WP_001093918.1|2241190_2241472_+	hypothetical protein	NA	K7PGU0	Enterobacteria_phage	98.9	8.7e-45
WP_000956557.1|2241889_2242423_-	hypothetical protein	NA	K7PKJ4	Enterobacteria_phage	100.0	1.1e-99
>prophage 4
NZ_CP024859	Escherichia coli strain AR_0014, complete genome	4839565	3739323	3752506	4839565		Escherichia_phage(50.0%)	12	NA	NA
WP_001295182.1|3739323_3740085_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
WP_000254708.1|3740078_3740705_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
WP_001272592.1|3740844_3741984_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
WP_000081550.1|3742046_3743039_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
WP_000104441.1|3743132_3744497_-	GntP family transporter	NA	NA	NA	NA	NA
WP_100183776.1|3744585_3745362_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_001278994.1|3745366_3746005_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
WP_000590403.1|3746001_3747264_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	61.4	1.7e-135
WP_000847984.1|3747260_3748169_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	5.1e-118
WP_001300386.1|3748364_3749132_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.3	7.4e-70
WP_001141322.1|3749182_3749839_-	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	46.3	6.2e-49
WP_001272928.1|3749944_3752506_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
>prophage 5
NZ_CP024859	Escherichia coli strain AR_0014, complete genome	4839565	4354913	4364354	4839565		Enterobacteria_phage(85.71%)	10	NA	NA
WP_000569315.1|4354913_4355840_+	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	2.8e-23
WP_000783120.1|4355844_4356576_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_001216963.1|4356556_4356664_-	protein YohO	NA	NA	NA	NA	NA
WP_001240401.1|4356723_4357455_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001295431.1|4357676_4359362_+	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_000598641.1|4359358_4360078_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950409.1|4360124_4360595_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	5.2e-82
WP_001295429.1|4360634_4361096_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	100.0	1.9e-76
WP_001375261.1|4361220_4363221_-	hypothetical protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
WP_001333512.1|4363217_4364354_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.7	1.9e-162
>prophage 6
NZ_CP024859	Escherichia coli strain AR_0014, complete genome	4839565	4457283	4468746	4839565		Enterobacteria_phage(28.57%)	8	NA	NA
WP_100183783.1|4457283_4458690_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.0	7.3e-39
WP_039268428.1|4459685_4460750_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	55.0	1.3e-104
WP_039268427.1|4460763_4461633_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	67.0	5.7e-111
WP_039268426.1|4461664_4462555_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.2	1.3e-28
WP_039268425.1|4462569_4463124_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	57.5	5.0e-52
WP_039268424.1|4463302_4464469_+	nucleotide sugar dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	53.2	2.1e-108
WP_001310941.1|4466662_4467448_+	O9 family O-antigen ABC transporter permease subunit Wzm	NA	NA	NA	NA	NA
WP_000025034.1|4467450_4468746_+	O9 family O-antigen ABC transporter ATP-binding protein Wzt	NA	A0A2H4PQG7	Staphylococcus_phage	27.0	1.5e-14
>prophage 1
NZ_CP024860	Escherichia coli strain AR_0014 plasmid unitig_1_pilon, complete sequence	172588	17829	67459	172588	protease,transposase	Stx2-converting_phage(20.0%)	46	NA	NA
WP_023149734.1|17829_19401_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	58.5	4.9e-169
WP_072142979.1|20104_20338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001312851.1|20581_20731_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA	NA
WP_000083833.1|21014_21272_+	replication regulatory protein RepA	NA	NA	NA	NA	NA
WP_032336874.1|21507_21582_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
WP_000410951.1|23341_24562_+	arginine deiminase	NA	NA	NA	NA	NA
WP_000440183.1|24572_25484_+	carbamate kinase	NA	NA	NA	NA	NA
WP_000154545.1|25568_26573_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000514417.1|26620_28024_+	YfcC family protein	NA	NA	NA	NA	NA
WP_001496175.1|28104_28584_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000080227.1|28940_29162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000624725.1|29192_29543_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZBY2	Stx2-converting_phage	66.4	4.7e-40
WP_059330006.1|29539_29902_-	IS66 family insertion sequence hypothetical protein	NA	Q6H9S5	Enterobacteria_phage	88.5	9.0e-34
WP_032152936.1|30740_31319_+	DUF2726 domain-containing protein	NA	NA	NA	NA	NA
WP_000005489.1|31731_32085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000156883.1|32556_33579_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_000083821.1|33983_34241_+	replication regulatory protein RepA	NA	NA	NA	NA	NA
WP_001365705.1|34475_34550_+	RepA leader peptide Tap	NA	NA	NA	NA	NA
WP_032152935.1|34542_35400_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA	NA
WP_000616807.1|36338_36992_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000557619.1|37084_37342_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA	NA
WP_001398199.1|37274_37676_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA	NA
WP_001553819.1|37812_40710_-|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	4.2e-182
WP_000509965.1|40804_41410_+	recombinase family protein	NA	A0A1S5Y2X8	uncultured_archaeal_virus	35.3	9.4e-20
WP_001351729.1|42186_42579_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_000058717.1|42716_43601_+	EamA family transporter	NA	NA	NA	NA	NA
WP_000804064.1|43632_44832_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA	NA
WP_000470728.1|44910_45588_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA	NA
WP_032140899.1|45619_45862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|47483_48188_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000108589.1|48904_49462_+	OsmC family protein	NA	NA	NA	NA	NA
WP_000210409.1|49603_50185_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000888080.1|50189_50528_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002431133.1|50557_50887_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	34.7	1.3e-10
WP_000039982.1|51100_52207_+	alkene reductase	NA	NA	NA	NA	NA
WP_001194013.1|52272_52974_+	DsbA family oxidoreductase	NA	NA	NA	NA	NA
WP_032152933.1|53039_53813_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000872613.1|53998_55222_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000090196.1|55352_56225_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000734115.1|56466_57219_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001336919.1|58594_59164_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	Q9LA58	Enterobacterial_phage	44.2	6.4e-26
WP_001189123.1|59729_61238_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	31.8	3.6e-44
WP_032143699.1|61546_61918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001020413.1|63503_64679_-	enterotoxin production-related protein TieB	NA	NA	NA	NA	NA
WP_100183790.1|64747_66682_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_001067855.1|66754_67459_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
>prophage 2
NZ_CP024860	Escherichia coli strain AR_0014 plasmid unitig_1_pilon, complete sequence	172588	83080	133772	172588	integrase,transposase	Escherichia_phage(40.0%)	40	128484:128499	139567:139582
WP_001067858.1|83080_83785_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	1.2e-138
WP_100183791.1|83843_83999_+	DUF4158 domain-containing protein	NA	Q1MVP5	Enterobacteria_phage	100.0	7.5e-22
WP_000608644.1|84180_85443_+|transposase	IS1380-like element ISEc9 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
WP_000239590.1|85698_86574_+	class A extended-spectrum beta-lactamase CTX-M-15	NA	A0A1B0VBP7	Salmonella_phage	82.4	1.1e-125
WP_001393253.1|86620_86953_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA	NA
WP_001067855.1|89274_89979_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_002063889.1|91172_91715_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_000557452.1|91727_92588_-	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA	NA
WP_001067855.1|92694_93399_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001334766.1|94030_94861_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA	NA
WP_063840321.1|94991_95546_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA	NA
WP_001067855.1|95689_96394_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_024193849.1|96418_96793_+	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	100.0	9.8e-60
WP_000255956.1|97872_98895_+|transposase	IS21-like element IS100 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	99.1	1.0e-199
WP_001317493.1|98891_99674_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	99.6	5.9e-139
WP_000977394.1|100412_101204_-	DUF4198 domain-containing protein	NA	NA	NA	NA	NA
WP_001496335.1|101210_103181_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_001322642.1|104423_104696_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_001072358.1|105542_106712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001309252.1|107078_107267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066953.1|107387_108128_+|integrase	site-specific integrase	integrase	I3WFA4	Macacine_betaherpesvirus	57.6	2.0e-24
WP_000361611.1|108412_109390_-	RepB family plasmid replication initiator protein	NA	J9Q7H0	Salmonella_phage	63.9	4.6e-101
WP_000949005.1|112371_113286_+	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA	NA
WP_000983710.1|113285_114113_+	iron/manganese ABC transporter ATP-binding protein SitB	NA	A0A1M7XV31	Cedratvirus	27.0	3.6e-14
WP_001101723.1|114109_114967_+	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA	NA
WP_000968139.1|114963_115821_+	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA	NA
WP_001318207.1|117063_117444_+	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	55.0	1.9e-26
WP_000095526.1|117823_119017_-	MFS transporter	NA	NA	NA	NA	NA
WP_044068371.1|119152_120877_+	aerobactin synthase IucA	NA	NA	NA	NA	NA
WP_000011908.1|120877_121825_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA	NA
WP_001015721.1|121824_123567_+	aerobactin synthase IucC	NA	NA	NA	NA	NA
WP_000750130.1|123563_124841_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA	NA
WP_000973519.1|124922_127124_+	ferric aerobactin receptor IutA	NA	NA	NA	NA	NA
128484:128499	attL	TCCACGCAGGTCCGGT	NA	NA	NA	NA
WP_000361402.1|128589_129612_-	helicase UvrD	NA	NA	NA	NA	NA
WP_001128474.1|129596_131162_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_001034044.1|131236_131653_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_001261286.1|131649_131880_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000813630.1|132439_132658_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA	NA
WP_001159871.1|132659_132965_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA	NA
WP_000016970.1|132965_133772_+|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	100.0	5.8e-57
139567:139582	attR	ACCGGACCTGCGTGGA	NA	NA	NA	NA
