assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002777175.1_ASM277717v1	NZ_CP017719	Salmonella enterica subsp. enterica serovar Hayindogo strain FDA957831-1-1 chromosome, complete genome	1	931184-932371	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|381aa|up_9|NZ_CP017719.1_916985_918128_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP017719.1_918171_920928_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP017719.1_920985_922281_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP017719.1_922332_924567_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP017719.1_924650_925007_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP017719.1_924972_925269_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP017719.1_926033_926834_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP017719.1_927061_928699_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP017719.1_928781_930080_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP017719.1_930215_930887_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP017719.1_932468_933266_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP017719.1_933355_933718_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP017719.1_934152_935952_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP017719.1_935951_937664_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP017719.1_937739_938474_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP017719.1_938686_939640_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP017719.1_940083_942747_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP017719.1_942758_944315_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_8|NZ_CP017719.1_944311_944872_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP017719.1_944885_945944_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_002777175.1_ASM277717v1	NZ_CP017719	Salmonella enterica subsp. enterica serovar Hayindogo strain FDA957831-1-1 chromosome, complete genome	2	948640-949156	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCTAGCGGGGATAAAC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCNAGCGGGGATAAACCG	27,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP017719.1_937739_938474_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP017719.1_938686_939640_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP017719.1_940083_942747_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP017719.1_942758_944315_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP017719.1_944311_944872_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP017719.1_944885_945944_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP017719.1_945954_946701_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP017719.1_946682_947333_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP017719.1_947329_948250_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP017719.1_948249_948543_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP017719.1_949170_950217_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP017719.1_950467_951376_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP017719.1_951385_952825_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP017719.1_952811_953417_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP017719.1_953467_953791_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP017719.1_953981_954293_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP017719.1_954311_955022_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP017719.1_955021_955501_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP017719.1_955497_956547_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP017719.1_956527_957289_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002777175.1_ASM277717v1	NZ_CP017719	Salmonella enterica subsp. enterica serovar Hayindogo strain FDA957831-1-1 chromosome, complete genome	3	3359488-3359576	3	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	ATCGTTGGACATCCGTTGGACAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|71aa|up_9|NZ_CP017719.1_3355097_3355310_-,NA|99aa|up_3|NZ_CP017719.1_3356531_3356828_-,NA|83aa|up_2|NZ_CP017719.1_3356830_3357079_-,NA|101aa|down_4|NZ_CP017719.1_3361795_3362098_+	NA|71aa|up_9|NZ_CP017719.1_3355097_3355310_-	NA	NA|59aa|up_8|NZ_CP017719.1_3355302_3355479_-	pfam05810, NinF, NinF protein	NA|114aa|up_7|NZ_CP017719.1_3355471_3355813_-	PHA01519, PHA01519, hypothetical protein	NA|59aa|up_6|NZ_CP017719.1_3355815_3355992_-	pfam05322, NinE, NINE Protein	NA|53aa|up_5|NZ_CP017719.1_3355973_3356132_-	pfam17466, NinD, Family of unknown function	NA|149aa|up_4|NZ_CP017719.1_3356128_3356575_-	pfam05772, NinB, NinB protein	NA|99aa|up_3|NZ_CP017719.1_3356531_3356828_-	NA	NA|83aa|up_2|NZ_CP017719.1_3356830_3357079_-	NA	NA|91aa|up_1|NZ_CP017719.1_3357309_3357582_-	pfam15944, DUF4752, Domain of unknown function (DUF4752)	NA|479aa|up_0|NZ_CP017719.1_3357656_3359093_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|49aa|down_0|NZ_CP017719.1_3359974_3360121_-	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|93aa|down_1|NZ_CP017719.1_3360155_3360434_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|62aa|down_2|NZ_CP017719.1_3360540_3360726_-	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro	NA|217aa|down_3|NZ_CP017719.1_3360806_3361457_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|101aa|down_4|NZ_CP017719.1_3361795_3362098_+	NA	NA|328aa|down_5|NZ_CP017719.1_3362176_3363160_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|58aa|down_6|NZ_CP017719.1_3363354_3363528_+	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|63aa|down_7|NZ_CP017719.1_3363508_3363697_+	pfam17519, DUF5444, Family of unknown function (DUF5444)	NA|48aa|down_8|NZ_CP017719.1_3363686_3363830_+	pfam17585, Phage_Arf, Accessory recombination function protein	NA|236aa|down_9|NZ_CP017719.1_3363826_3364534_+	COG4712, COG4712, Uncharacterized protein conserved in bacteria [Function unknown]
