The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017940	Phyllobacterium zundukense strain Tri-48 chromosome, complete genome	3950702	1532938	1548766	3950702	tRNA	uncultured_Mediterranean_phage(66.67%)	18	NA	NA
WP_100001088.1|1532938_1533757_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	35.3	6.5e-32
WP_099998828.1|1533749_1534475_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	46.5	1.2e-42
WP_099998829.1|1534666_1534894_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	65.9	1.2e-07
WP_099998830.1|1534957_1535557_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_099998831.1|1535553_1536378_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.2	6.8e-45
WP_099998832.1|1536446_1537730_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.7	1.1e-107
WP_099998833.1|1537745_1538504_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA	NA
WP_099998834.1|1538500_1539154_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	36.6	5.2e-16
WP_099998835.1|1539279_1540647_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	36.3	4.9e-16
WP_099998836.1|1540765_1541020_+	type II toxin-antitoxin system HicA family toxin	NA	R4JMD3	Burkholderia_phage	53.6	1.8e-17
WP_099998837.1|1541016_1541346_+	type II toxin-antitoxin system HicB family antitoxin	NA	K7PJX6	Enterobacterial_phage	39.6	2.9e-15
WP_099998838.1|1541362_1542226_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_099998839.1|1542386_1542728_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.7	3.9e-07
WP_099998840.1|1542790_1545061_+	protein translocase subunit SecD	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	37.1	5.8e-46
WP_099998841.1|1545062_1545452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099998842.1|1545479_1546316_+	phytoene/squalene synthase family protein	NA	NA	NA	NA	NA
WP_099998843.1|1546318_1547728_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_099998844.1|1547818_1548766_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	32.6	8.4e-07
>prophage 2
NZ_CP017940	Phyllobacterium zundukense strain Tri-48 chromosome, complete genome	3950702	1780428	1790843	3950702	tRNA,transposase	Brucella_phage(28.57%)	13	NA	NA
WP_100001145.1|1780428_1781448_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	30.7	8.7e-34
WP_099999021.1|1781579_1782050_-	YbaK/EbsC family protein	NA	NA	NA	NA	NA
WP_099999022.1|1782046_1782856_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_099999023.1|1782848_1783646_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_099999024.1|1783652_1785200_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	40.3	1.6e-103
WP_099999025.1|1785298_1785682_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_099999026.1|1785681_1785918_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_099999027.1|1785979_1787032_-	DNA polymerase III subunit delta'	NA	A0A1U9WR94	Streptococcus_virus	32.1	1.2e-06
WP_099999028.1|1787028_1787700_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	39.6	1.3e-30
WP_099999029.1|1787741_1788026_-	putative addiction module antidote protein	NA	A0A141GEX5	Brucella_phage	54.1	3.1e-21
WP_100001147.1|1788028_1788319_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A141GEX6	Brucella_phage	62.1	5.3e-29
WP_100001148.1|1788376_1789588_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_100001150.1|1789574_1790843_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	52.4	4.1e-17
>prophage 3
NZ_CP017940	Phyllobacterium zundukense strain Tri-48 chromosome, complete genome	3950702	2075419	2114266	3950702	capsid,head,tRNA,terminase,tail	Sinorhizobium_phage(25.0%)	41	NA	NA
WP_099999297.1|2075419_2076769_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_099999298.1|2077370_2077640_-	DUF1467 family protein	NA	NA	NA	NA	NA
WP_099999299.1|2077641_2078046_-	methylmalonyl-CoA epimerase	NA	NA	NA	NA	NA
WP_099999300.1|2078053_2079727_-	ribonuclease J	NA	NA	NA	NA	NA
WP_099999301.1|2079749_2080589_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_099999302.1|2080602_2082027_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_099999303.1|2082047_2083553_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_162293147.1|2083552_2085544_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_099999304.1|2085551_2085860_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_099999305.1|2085859_2086492_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_099999306.1|2086633_2087125_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_099999307.1|2087136_2088183_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_100001195.1|2088200_2090282_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_133123846.1|2090385_2090937_-	NADH-ubiquinone dehydrogenase	NA	NA	NA	NA	NA
WP_099999309.1|2090999_2092301_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_099999310.1|2092369_2093551_-	NADH-quinone oxidoreductase subunit E	NA	NA	NA	NA	NA
WP_099999311.1|2093550_2094741_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_099999312.1|2094783_2095392_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_099999313.1|2095401_2095983_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_099999314.1|2095973_2096339_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_099999315.1|2096780_2097992_-	MFS transporter	NA	NA	NA	NA	NA
WP_099999316.1|2098131_2098668_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_099999317.1|2098674_2099250_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_133123845.1|2100054_2100780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099999319.1|2100787_2101306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099999320.1|2101376_2101583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099999322.1|2101971_2102727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157929513.1|2103313_2103490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099999324.1|2103591_2103798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162293148.1|2103935_2104913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099999326.1|2104971_2107629_-	hypothetical protein	NA	A0A291AUM6	Sinorhizobium_phage	35.6	3.0e-33
WP_099999327.1|2107639_2109271_-|terminase	terminase large subunit	terminase	E4ZFM0	Streptococcus_phage	32.3	9.2e-70
WP_099999328.1|2109270_2109660_-|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
WP_099999329.1|2109656_2109974_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_099999330.1|2109976_2110396_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_099999331.1|2110392_2110812_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_099999332.1|2110813_2111107_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_099999333.1|2111103_2111727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099999334.1|2111723_2112062_-	HNH endonuclease	NA	Q38456	Bacillus_phage	47.8	1.3e-18
WP_157929514.1|2112061_2112658_-|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_099999336.1|2112694_2114266_-|capsid	phage major capsid protein	capsid	A0A1B1IQC5	uncultured_Mediterranean_phage	25.2	4.6e-18
>prophage 1
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	0	1437	211008		Vibrio_phage(100.0%)	1	NA	NA
WP_100003692.1|399_1437_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	71.2	2.2e-16
>prophage 2
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	11557	15955	211008		uncultured_Caudovirales_phage(75.0%)	6	NA	NA
WP_100003700.1|11557_12304_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	72.9	4.3e-91
WP_100003701.1|12260_12683_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	67.9	1.8e-46
WP_100003856.1|12679_13387_-	aquaporin family protein	NA	NA	NA	NA	NA
WP_100003702.1|13397_14330_-	GNAT family N-acetyltransferase	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	42.6	2.0e-24
WP_100003857.1|14322_14679_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_100003703.1|14926_15955_+	glycosyltransferase family 2 protein	NA	A0A075B8F6	Enterobacteria_phage	37.8	2.5e-52
>prophage 3
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	26537	27464	211008		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_100003714.1|26537_27464_-	glyoxylate/hydroxypyruvate reductase A	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	25.3	1.1e-06
>prophage 4
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	33131	40537	211008		Streptococcus_phage(33.33%)	5	NA	NA
WP_100003722.1|33131_35849_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	38.3	4.1e-115
WP_157929639.1|35909_36620_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_100003724.1|36729_38223_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_100003859.1|38460_39471_-	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	33.0	6.9e-07
WP_100003725.1|39484_40537_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.8	2.4e-10
>prophage 5
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	49193	51707	211008		uncultured_virus(100.0%)	1	NA	NA
WP_162293282.1|49193_51707_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	35.0	1.4e-96
>prophage 6
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	101968	103306	211008		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_100003867.1|101968_103306_-	nucleotide sugar dehydrogenase	NA	M1HZW8	Acanthocystis_turfacea_Chlorella_virus	30.9	3.2e-36
>prophage 7
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	106835	108725	211008		Planktothrix_phage(100.0%)	1	NA	NA
WP_100003783.1|106835_108725_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	5.8e-23
>prophage 8
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	135663	136443	211008		Planktothrix_phage(100.0%)	1	NA	NA
WP_100003805.1|135663_136443_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	7.9e-19
>prophage 9
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	142842	146838	211008		Tupanvirus(100.0%)	1	NA	NA
WP_100003809.1|142842_146838_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	23.7	5.6e-60
>prophage 10
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	150039	153706	211008		Ochrobactrum_phage(66.67%)	3	NA	NA
WP_100003812.1|150039_151320_-	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	26.0	2.7e-16
WP_100003872.1|151478_152486_-	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	38.3	5.5e-49
WP_100003813.1|152482_153706_-	plasmid partitioning protein RepA	NA	A0A240F4U1	Ochrobactrum_phage	53.9	5.8e-117
>prophage 11
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	158266	159343	211008		Mycoplasma_phage(100.0%)	1	NA	NA
WP_100003818.1|158266_159343_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	41.6	5.2e-21
>prophage 12
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	165781	167110	211008		Mycobacterium_phage(100.0%)	1	NA	NA
WP_100003825.1|165781_167110_-	aspartate aminotransferase family protein	NA	A0A1I9S933	Mycobacterium_phage	27.9	1.5e-06
>prophage 13
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	172453	173236	211008		Planktothrix_phage(100.0%)	1	NA	NA
WP_100003875.1|172453_173236_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	25.1	9.7e-09
>prophage 14
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	181250	188384	211008		Organic_Lake_phycodnavirus(33.33%)	5	NA	NA
WP_162293283.1|181250_182765_-	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.8	1.0e-09
WP_100003840.1|182891_183872_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_100003876.1|184135_185176_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.5	3.9e-21
WP_100003841.1|185172_186525_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_100003842.1|186527_188384_-	sensor histidine kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	34.8	7.4e-07
>prophage 15
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	193701	197144	211008		Amsacta_moorei_entomopoxvirus(50.0%)	3	NA	NA
WP_100003847.1|193701_195222_-	sugar ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	24.9	2.4e-11
WP_100003848.1|195290_196289_-	rhamnose ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_100003849.1|196340_197144_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	29.8	7.4e-20
>prophage 16
NZ_CP017945	Phyllobacterium zundukense strain Tri-48 plasmid unnamed5, complete sequence	211008	205580	206069	211008		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_162293284.1|205580_206069_+	RidA family protein	NA	M1I5B0	Acanthocystis_turfacea_Chlorella_virus	40.8	3.5e-25
