assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002764015.1_ASM276401v1	NZ_CP024717	Escherichia coli strain LS4 chromosome, complete genome	1	228945-229058	1	PILER-CR	no		RT,cas3,DinG,DEDDh,WYL,c2c9_V-U4,csa3	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	RT,cas3,DinG,DEDDh,WYL,c2c9_V-U4,csa3	NA|47aa|up_8|NZ_CP024717.1_220333_220474_-,NA|34aa|up_3|NZ_CP024717.1_221734_221836_-,NA|94aa|down_9|NZ_CP024717.1_234123_234405_+	NA|230aa|up_9|NZ_CP024717.1_219647_220337_-	pfam06323, Phage_antiter_Q, Phage antitermination protein Q	NA|47aa|up_8|NZ_CP024717.1_220333_220474_-	NA	NA|121aa|up_7|NZ_CP024717.1_220470_220833_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_6|NZ_CP024717.1_220829_221120_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_5|NZ_CP024717.1_221112_221283_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_4|NZ_CP024717.1_221282_221738_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_3|NZ_CP024717.1_221734_221836_-	NA	NA|348aa|up_2|NZ_CP024717.1_222185_223229_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|1422aa|up_1|NZ_CP024717.1_223265_227531_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|234aa|up_0|NZ_CP024717.1_227780_228482_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP024717.1_229494_230034_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP024717.1_230103_230334_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP024717.1_230438_231128_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NZ_CP024717.1_231723_231930_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP024717.1_232005_232302_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP024717.1_232307_233093_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP024717.1_233089_233770_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP024717.1_233766_233949_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP024717.1_233921_234113_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|down_9|NZ_CP024717.1_234123_234405_+	NA
GCF_002764015.1_ASM276401v1	NZ_CP024717	Escherichia coli strain LS4 chromosome, complete genome	2	456164-456255	1	CRISPRCasFinder	no		RT,cas3,DinG,DEDDh,WYL,c2c9_V-U4,csa3	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DinG,DEDDh,WYL,c2c9_V-U4,csa3	NA|70aa|up_9|NZ_CP024717.1_445414_445624_-,NA	NA|70aa|up_9|NZ_CP024717.1_445414_445624_-	NA	NA|1321aa|up_8|NZ_CP024717.1_445678_449641_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP024717.1_449680_450319_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP024717.1_450606_451698_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP024717.1_451697_452390_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP024717.1_452401_452788_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP024717.1_452795_453596_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP024717.1_453605_454196_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP024717.1_454206_454701_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP024717.1_454721_456050_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP024717.1_456678_457275_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP024717.1_457295_457523_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP024717.1_457560_458802_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP024717.1_459336_460257_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP024717.1_460256_460562_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP024717.1_460816_461416_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP024717.1_461412_463959_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP024717.1_463958_465131_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP024717.1_465260_465953_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP024717.1_465925_466954_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_002764015.1_ASM276401v1	NZ_CP024717	Escherichia coli strain LS4 chromosome, complete genome	3	691254-691336	2	CRISPRCasFinder	no		RT,cas3,DinG,DEDDh,WYL,c2c9_V-U4,csa3	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	RT,cas3,DinG,DEDDh,WYL,c2c9_V-U4,csa3	NA,NA	NA|431aa|up_9|NZ_CP024717.1_676251_677544_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP024717.1_677634_678978_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP024717.1_678988_679600_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP024717.1_679758_683865_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP024717.1_683999_684494_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP024717.1_685037_686003_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP024717.1_686125_687892_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP024717.1_687892_689614_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP024717.1_689655_690360_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP024717.1_690644_690863_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP024717.1_691547_693824_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP024717.1_693854_694175_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP024717.1_694497_694722_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP024717.1_694794_696741_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP024717.1_696737_697853_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP024717.1_698003_698960_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP024717.1_698956_700615_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP024717.1_701039_701735_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP024717.1_702149_703049_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP024717.1_703192_704845_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002764015.1_ASM276401v1	NZ_CP024717	Escherichia coli strain LS4 chromosome, complete genome	4	4882345-4882468	3	CRISPRCasFinder	no	DEDDh	RT,cas3,DinG,DEDDh,WYL,c2c9_V-U4,csa3	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,DinG,DEDDh,WYL,c2c9_V-U4,csa3	NA,NA|30aa|down_7|NZ_CP024717.1_4891364_4891454_+	NA|471aa|up_9|NZ_CP024717.1_4871797_4873210_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP024717.1_4873766_4873976_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP024717.1_4874431_4875058_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP024717.1_4875078_4877181_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP024717.1_4877184_4877832_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP024717.1_4877895_4878564_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP024717.1_4878560_4879346_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP024717.1_4879349_4880162_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP024717.1_4880173_4881778_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP024717.1_4881903_4882209_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP024717.1_4882782_4884039_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP024717.1_4884079_4885453_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP024717.1_4885667_4886309_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP024717.1_4886348_4887497_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP024717.1_4887787_4888999_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP024717.1_4889111_4890044_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP024717.1_4890040_4891066_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP024717.1_4891364_4891454_+	NA	NA|390aa|down_8|NZ_CP024717.1_4891619_4892789_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP024717.1_4892934_4893516_-	PRK10543, PRK10543, superoxide dismutase [Fe]
