The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021849	Enterococcus faecium strain 16-346 chromosome, complete genome	2736595	320783	329844	2736595		Gordonia_phage(16.67%)	9	NA	NA
WP_002288023.1|320783_322079_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
WP_002297115.1|322258_322636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|322891_323620_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|323619_323874_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288017.1|323875_324547_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002288015.1|324547_326770_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
WP_002288013.1|326754_328194_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002321731.1|328225_329269_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002288010.1|329265_329844_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 2
NZ_CP021849	Enterococcus faecium strain 16-346 chromosome, complete genome	2736595	767288	875485	2736595	plate,terminase,holin,integrase,capsid,portal,tail,protease,head,tRNA	Enterococcus_phage(52.38%)	111	797249:797264	879248:879263
WP_002294466.1|767288_767771_-|tRNA	prolyl-tRNA editing protein	tRNA	NA	NA	NA	NA
WP_002294467.1|767920_768289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294470.1|768753_769206_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_086274767.1|769328_770180_-	sugar transporter	NA	NA	NA	NA	NA
WP_002294471.1|770192_770978_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002294472.1|771372_772314_-	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
WP_002294474.1|772317_773241_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_002294143.1|776420_776642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099746306.1|776749_777097_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_002294141.1|777123_779430_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.7	3.6e-19
WP_002288509.1|779442_779754_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_002288501.1|779750_780044_-	YlxR family protein	NA	NA	NA	NA	NA
WP_002288500.1|780065_781241_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_002288499.1|781264_781738_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_002294137.1|786444_788154_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002294136.1|788221_789490_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_002294135.1|789650_790451_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002293875.1|791453_792011_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_002293877.1|792013_792736_-	UMP kinase	NA	NA	NA	NA	NA
WP_002293878.1|792871_793753_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_002293880.1|793851_794634_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002293881.1|794992_795472_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002293884.1|796771_797557_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
797249:797264	attL	CCTTATATGATCCATA	NA	NA	NA	NA
WP_002293885.1|797902_799594_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.8	9.9e-75
WP_002288434.1|800015_800963_-	carbamate kinase	NA	NA	NA	NA	NA
WP_002288437.1|801077_802097_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_002288439.1|802187_803417_-	arginine deiminase	NA	NA	NA	NA	NA
WP_002288442.1|803876_804578_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002293887.1|805149_806166_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.4	5.4e-60
WP_002293888.1|806162_806627_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002293890.1|806633_807176_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002302614.1|807159_807984_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002293893.1|808072_809053_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
WP_002293895.1|809076_810561_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_002293897.1|810572_811562_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	1.6e-48
WP_002288457.1|811810_811978_+	DUF3042 family protein	NA	NA	NA	NA	NA
WP_002293899.1|812039_813851_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_002288459.1|813847_814213_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_002293900.1|814375_814771_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_002293901.1|814788_815751_-	ROK family glucokinase	NA	NA	NA	NA	NA
WP_002293902.1|815750_815963_-	YqgQ family protein	NA	NA	NA	NA	NA
WP_099746404.1|815983_816649_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002289886.1|816700_817243_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002293903.1|817374_818379_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002313132.1|818375_819326_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002293905.1|819360_820167_-	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.0e-13
WP_002293906.1|820332_821289_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002296121.1|821365_821884_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
WP_002296119.1|821971_822121_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002293914.1|822350_822797_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002293915.1|822990_824886_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
WP_016627840.1|827161_827728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099746307.1|827759_829037_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0S2MYF3	Enterococcus_phage	68.9	6.4e-167
WP_099746308.1|829047_829245_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	84.4	7.8e-24
WP_002322123.1|829260_829503_-|holin	holin	holin	D2J075	Enterococcus_phage	68.4	2.1e-23
WP_099746309.1|829574_831848_-|plate	BppU family phage baseplate upper protein	plate	A0A249XZH9	Enterococcus_phage	60.5	4.2e-105
WP_099746310.1|831847_833929_-	hypothetical protein	NA	D2IYX8	Enterococcus_phage	68.6	5.2e-166
WP_099746311.1|833944_834796_-|tail	phage tail protein	tail	D2IYX7	Enterococcus_phage	54.9	5.0e-83
WP_099746312.1|834807_838707_-	tape measure protein	NA	D2IYX6	Enterococcus_phage	74.3	1.3e-202
WP_099746313.1|838711_838978_-	hypothetical protein	NA	D2IYX5	Enterococcus_phage	66.7	4.3e-25
WP_099746314.1|838995_839496_-	hypothetical protein	NA	D2IZN3	Enterococcus_phage	60.8	3.0e-48
WP_099746315.1|839531_840407_-	hypothetical protein	NA	D2IYX3	Enterococcus_phage	75.9	1.6e-132
WP_099746316.1|840416_841046_-|tail	phage major tail protein, TP901-1 family	tail	D2IYX2	Enterococcus_phage	83.7	4.8e-91
WP_099746317.1|841058_841415_-	hypothetical protein	NA	D2IYX1	Enterococcus_phage	69.5	8.8e-42
WP_099746318.1|841419_841764_-	hypothetical protein	NA	D2IYX0	Enterococcus_phage	57.9	2.2e-29
WP_099746319.1|841760_842042_-	hypothetical protein	NA	D2IYW9	Enterococcus_phage	45.7	1.1e-15
WP_099746320.1|842041_842392_-	hypothetical protein	NA	D2IYW8	Enterococcus_phage	67.8	1.2e-38
WP_099746321.1|842406_843381_-|capsid	phage capsid protein	capsid	D2IYW7	Enterococcus_phage	88.5	3.2e-150
WP_099746322.1|843393_844020_-	DUF4355 domain-containing protein	NA	D2IYW6	Enterococcus_phage	66.3	6.9e-50
WP_099746323.1|844243_845143_-|head	phage head morphogenesis protein	head	D2IYW4	Enterococcus_phage	78.5	6.5e-134
WP_099746324.1|845147_846647_-|portal	phage portal protein	portal	D2IYW2	Enterococcus_phage	81.3	2.0e-236
WP_099746325.1|846662_848123_-|terminase	phage terminase large subunit	terminase	Q2QER6	Lactococcus_phage	53.1	9.9e-132
WP_099746326.1|848109_848568_-|terminase	terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	47.7	6.5e-05
WP_099746327.1|848707_849616_-	hypothetical protein	NA	C9E2Q0	Enterococcus_phage	41.1	4.0e-46
WP_099746328.1|849785_850262_-	DUF1492 domain-containing protein	NA	A0A2H4JFW6	uncultured_Caudovirales_phage	51.6	7.4e-28
WP_104846539.1|850324_850570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099746329.1|850608_851037_+	hypothetical protein	NA	R9VW35	Paenibacillus_phage	31.2	2.6e-08
WP_002335802.1|851143_851335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301751.1|851342_851531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045172094.1|851527_852103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099746330.1|852151_852583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045172092.1|852575_853052_-	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	42.3	2.6e-17
WP_099746331.1|853009_853198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099746332.1|853218_853437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099746333.1|853433_854282_-	ATP-binding protein	NA	A0A2D1GQF9	Lysinibacillus_phage	29.5	3.9e-19
WP_074399786.1|854281_855064_-	hypothetical protein	NA	Q6J1V6	Lactobacillus_phage	49.6	5.1e-50
WP_099746334.1|855858_856860_-	recombinase RecT	NA	D7RWF9	Brochothrix_phage	63.9	3.1e-76
WP_099746335.1|856860_857055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002369161.1|857064_857289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099746336.1|857288_857618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099746337.1|857639_857837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002342110.1|857849_858116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321800.1|858126_858318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099746338.1|858609_858948_+	helix-turn-helix transcriptional regulator	NA	A0A126GGQ7	Streptococcus_phage	48.3	2.6e-19
WP_099746339.1|858959_859373_+	ImmA/IrrE family metallo-endopeptidase	NA	D2IZV8	Enterococcus_phage	31.4	1.1e-11
WP_099746340.1|859386_859587_+	hypothetical protein	NA	A0A097BY73	Enterococcus_phage	84.8	4.6e-24
WP_099746341.1|859667_860144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099746342.1|860136_860583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099746343.1|860954_862160_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	37.1	2.8e-63
WP_002293919.1|862443_863010_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_099746344.1|863265_864597_+	DUF1576 domain-containing protein	NA	NA	NA	NA	NA
WP_002293923.1|864562_864916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002306407.1|865007_865427_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002293927.1|865427_865772_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002287776.1|866121_866718_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.7	8.7e-34
WP_002293930.1|868917_869130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288573.1|870006_870393_+	YxeA family protein	NA	NA	NA	NA	NA
WP_002293932.1|870436_870649_+|integrase	integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	62.5	3.5e-06
WP_002288574.1|870753_872100_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002293933.1|872210_873560_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002288577.1|874999_875485_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
879248:879263	attR	CCTTATATGATCCATA	NA	NA	NA	NA
>prophage 3
NZ_CP021849	Enterococcus faecium strain 16-346 chromosome, complete genome	2736595	885578	943273	2736595	integrase,protease,transposase,tRNA	Paramecium_bursaria_Chlorella_virus(23.08%)	56	922749:922769	955799:955819
WP_000222572.1|885578_886532_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_000997695.1|886925_888104_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_099746345.1|888142_888436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321266.1|888721_888961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289617.1|889322_889583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293950.1|889766_890264_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_099746346.1|891115_892768_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002297646.1|892984_893647_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002293954.1|893656_894526_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002293955.1|894536_895433_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002293957.1|896772_897027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099746347.1|897010_897169_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002288972.1|897176_897290_+|protease	CAAX amino protease	protease	NA	NA	NA	NA
WP_002293960.1|898172_898403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033581966.1|898402_898708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295271.1|899245_900220_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002337288.1|900832_901741_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002333089.1|902230_903556_-	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	43.4	1.0e-98
WP_002325007.1|903851_904811_+|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_002295186.1|904969_905446_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002295185.1|905458_906961_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_099746348.1|906974_907637_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002289254.1|907823_908642_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289255.1|908871_909102_+	resolvase	NA	NA	NA	NA	NA
WP_002295182.1|909686_910142_-|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	38.2	4.3e-17
WP_099746349.1|910384_911810_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	39.5	1.9e-47
WP_002302077.1|911980_912943_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
WP_002293865.1|912944_914384_-	sucrose-6-phosphate hydrolase	NA	NA	NA	NA	NA
WP_002293868.1|914568_916515_+	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002292418.1|916778_917651_+	ROK family protein	NA	NA	NA	NA	NA
WP_002286913.1|920831_921179_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002293717.1|921314_922076_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002293716.1|922065_922587_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
922749:922769	attL	CGCTGATTTCACAACCTCTTC	NA	NA	NA	NA
WP_002325027.1|922756_923548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290277.1|923671_923923_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002290274.1|923934_924210_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002293714.1|924462_925017_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002293712.1|925095_925668_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293710.1|925619_926198_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_099746350.1|926309_927638_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002293708.1|927747_928086_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_099746351.1|928045_928549_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293705.1|928679_929384_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002293703.1|929380_931117_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	9.3e-28
WP_002293701.1|931219_933694_-	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	29.2	1.7e-46
WP_002289807.1|934018_934909_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_002293699.1|935105_935588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289810.1|935794_936160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322761.1|936250_936568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295271.1|937297_938272_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002295273.1|938434_938692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008266934.1|938923_939337_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_000997695.1|939475_940654_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_086956687.1|941046_942209_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002294831.1|942319_943012_-	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC6	Lactobacillus_phage	43.4	2.3e-30
WP_002294833.1|943006_943273_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	58.7	2.8e-08
955799:955819	attR	CGCTGATTTCACAACCTCTTC	NA	NA	NA	NA
>prophage 4
NZ_CP021849	Enterococcus faecium strain 16-346 chromosome, complete genome	2736595	1690344	1707067	2736595		Streptococcus_phage(84.62%)	15	NA	NA
WP_002319485.1|1690344_1691634_-	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	5.7e-22
WP_002345011.1|1692061_1692541_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_001825268.1|1692751_1692871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000420682.1|1692893_1693208_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1693223_1693610_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|1693638_1695024_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000398284.1|1695202_1696408_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_002286940.1|1697191_1699102_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_032509114.1|1699205_1699430_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	97.1	8.5e-27
WP_002345010.1|1699546_1700044_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	97.6	1.3e-88
WP_002345009.1|1700130_1700523_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.2	4.6e-68
WP_000331148.1|1700506_1702954_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	98.4	0.0e+00
WP_002345008.1|1702956_1705140_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	82.3	2.9e-305
WP_002345007.1|1705136_1706138_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	95.5	1.3e-183
WP_074400123.1|1706134_1707067_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	91.6	5.1e-158
>prophage 5
NZ_CP021849	Enterococcus faecium strain 16-346 chromosome, complete genome	2736595	2131813	2205992	2736595	plate,terminase,holin,integrase,capsid,portal,tail,head,tRNA	Enterococcus_phage(45.71%)	84	2167883:2167918	2206084:2206119
WP_086274861.1|2131813_2134612_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	9.6e-75
WP_002286622.1|2134873_2135581_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_002286624.1|2135601_2136384_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_073120020.1|2136432_2136720_-	YggT family protein	NA	NA	NA	NA	NA
WP_002286627.1|2136734_2137334_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_002286628.1|2137347_2138025_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_002286629.1|2138041_2139283_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002286631.1|2139305_2140631_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_086274863.1|2142020_2143109_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_002286639.1|2144507_2145470_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_002286640.1|2145495_2147688_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_002294542.1|2147688_2148090_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_002286642.1|2148094_2149054_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_002286645.1|2149074_2149506_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_002286647.1|2149675_2150044_-	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
WP_002286649.1|2150214_2151171_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002291876.1|2151243_2151360_+	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
WP_002286651.1|2151414_2153097_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_002286653.1|2153114_2153564_-	arginine repressor	NA	NA	NA	NA	NA
WP_002286655.1|2153670_2154489_-	TlyA family RNA methyltransferase	NA	NA	NA	NA	NA
WP_002286656.1|2154497_2155388_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_002286657.1|2155389_2155614_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_002294545.1|2155618_2156956_-	exodeoxyribonuclease VII large subunit	NA	L7RDW5	Acanthamoeba_polyphaga_moumouvirus	29.5	6.7e-26
WP_002286660.1|2156956_2157811_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.7	6.8e-40
WP_002286662.1|2157907_2158357_-	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_002286664.1|2158349_2158775_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002286665.1|2159020_2160085_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_002286666.1|2160256_2160502_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002286668.1|2160640_2161015_-	DUF956 family protein	NA	NA	NA	NA	NA
WP_002286670.1|2161097_2162012_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_002294546.1|2162032_2162836_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002289456.1|2162868_2163858_-	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
WP_002289455.1|2163960_2164452_-	PTS transporter subunit IIB	NA	NA	NA	NA	NA
WP_002294024.1|2164642_2167477_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
2167883:2167918	attL	ATTAAGCTTCTTGAGCTACTGGATAAACAGACACTT	NA	NA	NA	NA
WP_016631324.1|2168129_2168774_+	SHOCT domain-containing protein	NA	O48432	Lactobacillus_phage	33.5	5.5e-18
WP_048340730.1|2168866_2169169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_146681469.1|2169994_2170315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099746399.1|2170335_2170587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086274867.1|2170576_2171965_-	AAA family ATPase	NA	V9QJ85	Oenococcus_phage	37.5	6.2e-75
WP_086274869.1|2172140_2172719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086274872.1|2172778_2173753_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A060AHF9	Enterococcus_phage	65.4	2.1e-125
WP_002333628.1|2173752_2174166_-|holin	phage holin family protein	holin	A0A097BY69	Enterococcus_phage	65.4	1.7e-41
WP_002333629.1|2174227_2174356_-	XkdX family protein	NA	NA	NA	NA	NA
WP_002333630.1|2174357_2174804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086274876.1|2177010_2177769_-	hypothetical protein	NA	A0A067XGT4	Enterococcus_phage	31.4	1.3e-26
WP_086274878.1|2177781_2179566_-|plate	BppU family phage baseplate upper protein	plate	Q9AZX4	Lactococcus_phage	41.8	2.2e-40
WP_086274880.1|2179540_2182387_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1P8BMB8	Lactococcus_phage	61.3	0.0e+00
WP_086275012.1|2182383_2183151_-|tail	phage tail protein	tail	D7RWD9	Brochothrix_phage	45.5	3.1e-60
WP_086274882.1|2183183_2185208_-	tape measure protein	NA	A0A191KBR4	Streptococcus_virus	49.8	2.5e-125
WP_002367057.1|2185223_2185487_-	hypothetical protein	NA	A0A1P8BKT4	Lactococcus_phage	48.9	5.5e-17
WP_010729088.1|2185558_2185903_-	hypothetical protein	NA	A0A1L2JXK6	Streptococcus_phage	60.2	5.7e-30
WP_025479159.1|2186470_2186863_-	hypothetical protein	NA	Q77K20	Lactococcus_phage	73.8	1.5e-47
WP_002318275.1|2186862_2187201_-	HK97 gp10 family phage protein	NA	Q77K21	Lactococcus_phage	59.8	3.0e-31
WP_086274886.1|2187184_2187511_-	hypothetical protein	NA	C9E2J7	Enterococcus_phage	70.2	2.1e-37
WP_002322709.1|2187507_2187837_-	hypothetical protein	NA	A0A0S2MYD5	Enterococcus_phage	75.5	8.4e-39
WP_086274888.1|2187848_2188112_-	hypothetical protein	NA	D2J062	Enterococcus_phage	72.9	5.0e-10
WP_002330281.1|2188129_2189053_-|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	77.5	2.4e-139
WP_086274890.1|2189065_2189668_-	DUF4355 domain-containing protein	NA	A0A097BY91	Enterococcus_phage	50.7	1.2e-35
WP_081139780.1|2189795_2190722_-|head	phage head morphogenesis protein	head	A0A1L2JXH2	Streptococcus_phage	58.7	1.3e-92
WP_086274892.1|2190726_2192226_-|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	79.6	2.5e-223
WP_086274894.1|2192238_2193483_-|terminase	PBSX family phage terminase large subunit	terminase	D2IYW1	Enterococcus_phage	81.2	4.3e-200
WP_002342959.1|2193469_2194003_-|terminase	terminase small subunit	terminase	A0A059NT97	Lactococcus_phage	40.7	9.2e-19
WP_048946664.1|2194029_2194254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025477932.1|2194804_2195323_+	hypothetical protein	NA	A0A182BQC2	Lactococcus_phage	35.7	6.6e-22
WP_002332450.1|2195591_2196005_-	ArpU family phage transcriptional regulator	NA	C9E2P5	Enterococcus_phage	80.3	5.6e-56
WP_086274896.1|2196080_2196377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323694.1|2196373_2196595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086274898.1|2196595_2196907_-	hypothetical protein	NA	A0A0D3MVS9	Staphylococcus_phage	59.0	1.1e-27
WP_086274900.1|2196894_2197206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086274914.1|2197367_2197637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301524.1|2198397_2199084_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	2.9e-89
WP_002322006.1|2199089_2199824_-	DUF1071 domain-containing protein	NA	A0A1X9IGE5	Lactococcus_phage	48.4	2.1e-42
WP_086274918.1|2199816_2200158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301530.1|2200480_2200669_-	hypothetical protein	NA	D2IZW5	Enterococcus_phage	56.9	3.1e-06
WP_002343410.1|2200689_2200974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002330306.1|2200951_2201164_-	helix-turn-helix transcriptional regulator	NA	D2IZW2	Enterococcus_phage	54.5	2.6e-09
WP_086274920.1|2201166_2201940_-	phage antirepressor	NA	B2ZYU5	Staphylococcus_phage	52.8	5.9e-67
WP_002301534.1|2201996_2202218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086274922.1|2202393_2202582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010731229.1|2202658_2203075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086274924.1|2203689_2204037_+	helix-turn-helix transcriptional regulator	NA	A0A097QQ00	Enterococcus_phage	61.6	7.0e-28
WP_086275017.1|2204072_2204468_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002372718.1|2204520_2204832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002301539.1|2204843_2205992_+|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	40.1	3.0e-67
2206084:2206119	attR	ATTAAGCTTCTTGAGCTACTGGATAAACAGACACTT	NA	NA	NA	NA
>prophage 6
NZ_CP021849	Enterococcus faecium strain 16-346 chromosome, complete genome	2736595	2226883	2235355	2736595		Streptococcus_phage(66.67%)	9	NA	NA
WP_002288083.1|2226883_2229073_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
WP_002288081.1|2229387_2229990_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002294035.1|2230043_2231165_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288078.1|2231273_2232146_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002288076.1|2232214_2232562_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288073.1|2232554_2233379_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288071.1|2233414_2234353_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002292340.1|2234366_2234696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294039.1|2234710_2235355_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
>prophage 7
NZ_CP021849	Enterococcus faecium strain 16-346 chromosome, complete genome	2736595	2650808	2689330	2736595	plate,holin,tail,transposase,tRNA	Staphylococcus_phage(30.0%)	33	NA	NA
WP_002285932.1|2650808_2650988_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_002321622.1|2650981_2651194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104674935.1|2651181_2651352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077974465.1|2651775_2652525_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_016249808.1|2652941_2656013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002285922.1|2657918_2658680_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002285920.1|2658779_2660501_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	1.7e-37
WP_002285917.1|2662679_2664233_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_002285916.1|2664580_2666995_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
WP_002301403.1|2667421_2669440_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXE4	Bacillus_phage	39.6	5.8e-13
WP_002285911.1|2669809_2670466_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002285909.1|2670465_2671422_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
WP_002285906.1|2671421_2671988_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	42.8	2.2e-34
WP_049052232.1|2672423_2672654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002337498.1|2672659_2672959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286473.1|2672994_2673366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296902.1|2673367_2673769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286474.1|2673782_2674190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087046766.1|2675112_2676275_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002286484.1|2677214_2678240_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	2.1e-64
WP_002286683.1|2678236_2678461_-|holin	holin	holin	NA	NA	NA	NA
WP_002318262.1|2678457_2678751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071974452.1|2678788_2678926_-	XkdX family protein	NA	NA	NA	NA	NA
WP_002347165.1|2678927_2679359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305897.1|2679372_2679867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049050272.1|2679866_2680316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303306.1|2680319_2680940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048946725.1|2680939_2681848_-|plate	phage baseplate upper protein	plate	A0A1P8BKW9	Lactococcus_phage	24.3	1.1e-08
WP_049050347.1|2681860_2684623_-	CHAP domain-containing protein	NA	Q9AZX5	Lactococcus_phage	39.5	1.1e-139
WP_002349898.1|2684619_2685360_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002349899.1|2685349_2688139_-	tape measure protein	NA	D7RWD8	Brochothrix_phage	38.9	5.4e-70
WP_002303297.1|2688380_2688722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303295.1|2688721_2689330_-|tail	tail protein	tail	NA	NA	NA	NA
>prophage 8
NZ_CP021849	Enterococcus faecium strain 16-346 chromosome, complete genome	2736595	2695544	2712911	2736595	integrase,terminase	Enterococcus_phage(46.67%)	25	2709863:2709876	2711097:2711110
WP_048946578.1|2695544_2696960_-	DEAD/DEAH box helicase family protein	NA	C9E2I7	Enterococcus_phage	79.4	1.4e-218
WP_048946579.1|2696952_2697786_-|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	67.9	4.7e-78
WP_048946580.1|2697944_2698175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060763461.1|2698921_2699389_-	hypothetical protein	NA	D7RWH7	Brochothrix_phage	28.5	2.4e-07
WP_002341971.1|2699463_2699904_-	transcriptional regulator	NA	D2IYV6	Enterococcus_phage	38.4	5.3e-20
WP_048946598.1|2699933_2700227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048946597.1|2700257_2700452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033646791.1|2700557_2701010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002318210.1|2701035_2701497_-	class I SAM-dependent methyltransferase	NA	A0A2H4PBJ4	Lactobacillus_phage	67.1	1.1e-60
WP_033646793.1|2701497_2701701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002299339.1|2701697_2702549_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.2	2.3e-27
WP_048946585.1|2702563_2703364_-	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	54.9	3.0e-58
WP_002301573.1|2703406_2704297_-	hypothetical protein	NA	D2IYT9	Enterococcus_phage	84.5	1.4e-136
WP_033646797.1|2704298_2705240_-	endonuclease	NA	D2IZK1	Enterococcus_phage	79.2	1.0e-145
WP_002303273.1|2705472_2705808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002330811.1|2706133_2706322_-	hypothetical protein	NA	D2IZW5	Enterococcus_phage	60.3	7.4e-08
WP_002304466.1|2706384_2706624_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	81.1	1.8e-27
WP_002299323.1|2706620_2706776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297389.1|2706915_2707128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297388.1|2707130_2707343_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002297387.1|2707617_2708028_+	helix-turn-helix transcriptional regulator	NA	Q5YAA4	Bacillus_phage	51.4	2.8e-31
WP_002297386.1|2708040_2708493_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002304713.1|2708931_2709864_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	53.8	1.8e-57
2709863:2709876	attL	AAATATATAAAAAG	NA	NA	NA	NA
WP_033647077.1|2709935_2711057_+|integrase	site-specific integrase	integrase	C9E2L6	Enterococcus_phage	38.5	4.0e-64
WP_049058602.1|2711138_2712911_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	2.7e-54
2711097:2711110	attR	AAATATATAAAAAG	NA	NA	NA	NA
