assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	1	141893-146801	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Type I-E	GGGATCATCCCCGCGCTTGCGGGGAACAC,GGGATCATCCCCGCGCTTGCGGGGAACAC,GGGATCATCCCCGCGCTTGCGGGGAACAC	29,29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	80,80,80	80	TypeI-E	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA|97aa|up_8|NZ_CP018044.1_131646_131937_-,NA|92aa|up_7|NZ_CP018044.1_132334_132610_-,NA|71aa|up_5|NZ_CP018044.1_134181_134394_-,NA	NA|412aa|up_9|NZ_CP018044.1_130122_131358_-	pfam00558, Vpu, Vpu protein	NA|97aa|up_8|NZ_CP018044.1_131646_131937_-	NA	NA|92aa|up_7|NZ_CP018044.1_132334_132610_-	NA	NA|363aa|up_6|NZ_CP018044.1_132793_133882_-	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|71aa|up_5|NZ_CP018044.1_134181_134394_-	NA	NA|285aa|up_4|NZ_CP018044.1_134506_135361_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|693aa|up_3|NZ_CP018044.1_135523_137602_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|676aa|up_2|NZ_CP018044.1_137598_139626_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|244aa|up_1|NZ_CP018044.1_139622_140354_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|189aa|up_0|NZ_CP018044.1_141003_141570_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	cas2|126aa|down_0|NZ_CP018044.1_146944_147322_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|320aa|down_1|NZ_CP018044.1_147325_148285_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|237aa|down_2|NZ_CP018044.1_148430_149141_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|248aa|down_3|NZ_CP018044.1_149156_149900_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|377aa|down_4|NZ_CP018044.1_149907_151038_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|212aa|down_5|NZ_CP018044.1_151123_151759_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|575aa|down_6|NZ_CP018044.1_151748_153473_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|985aa|down_7|NZ_CP018044.1_153528_156483_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|424aa|down_8|NZ_CP018044.1_157466_158738_-	TIGR01436, Glutamate--cysteine_ligase_chloroplastic, glutamate--cysteine ligase, plant type	NA|1584aa|down_9|NZ_CP018044.1_158852_163604_-	COG3580, COG3580, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	2	290961-291063	2	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Orphan	TCCAACCTAATCCCAAGCCATGCGCGGCCC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA|158aa|up_5|NZ_CP018044.1_283950_284424_+,NA	NA|295aa|up_9|NZ_CP018044.1_278586_279471_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|305aa|up_8|NZ_CP018044.1_279738_280653_-	pfam05704, Caps_synth, Capsular polysaccharide synthesis protein	NA|415aa|up_7|NZ_CP018044.1_280753_281998_-	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional	NA|512aa|up_6|NZ_CP018044.1_282054_283590_-	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|158aa|up_5|NZ_CP018044.1_283950_284424_+	NA	NA|560aa|up_4|NZ_CP018044.1_284472_286152_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|451aa|up_3|NZ_CP018044.1_286161_287514_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|249aa|up_2|NZ_CP018044.1_287605_288352_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|371aa|up_1|NZ_CP018044.1_288401_289514_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|466aa|up_0|NZ_CP018044.1_289513_290911_-	PRK00148, PRK00148, Maf-like protein; Reviewed	NA|351aa|down_0|NZ_CP018044.1_291503_292556_-	pfam18741, MTES_1575, REase_MTES_1575	NA|292aa|down_1|NZ_CP018044.1_293228_294104_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|217aa|down_2|NZ_CP018044.1_294116_294767_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|1206aa|down_3|NZ_CP018044.1_294852_298470_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|607aa|down_4|NZ_CP018044.1_298729_300550_+	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases	NA|207aa|down_5|NZ_CP018044.1_300533_301154_+	pfam14393, DUF4422, Domain of unknown function (DUF4422)	NA|188aa|down_6|NZ_CP018044.1_301150_301714_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|289aa|down_7|NZ_CP018044.1_301718_302585_-	pfam02485, Branch, Core-2/I-Branching enzyme	NA|316aa|down_8|NZ_CP018044.1_302621_303569_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|329aa|down_9|NZ_CP018044.1_303752_304739_+	COG5039, COG5039, Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	3	462301-462455	3	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Orphan	TGACTTCCATCGATCTCAGCCATAACAC	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA|157aa|up_5|NZ_CP018044.1_452289_452760_-,NA|572aa|down_2|NZ_CP018044.1_466807_468523_-	NA|860aa|up_9|NZ_CP018044.1_444504_447084_+	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|645aa|up_8|NZ_CP018044.1_447249_449184_+	pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2	NA|536aa|up_7|NZ_CP018044.1_449275_450883_-	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains	NA|380aa|up_6|NZ_CP018044.1_451027_452167_-	pfam00395, SLH, S-layer homology domain	NA|157aa|up_5|NZ_CP018044.1_452289_452760_-	NA	NA|640aa|up_4|NZ_CP018044.1_453841_455761_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|264aa|up_3|NZ_CP018044.1_456003_456795_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|444aa|up_2|NZ_CP018044.1_456867_458199_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|436aa|up_1|NZ_CP018044.1_458226_459534_+	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|586aa|up_0|NZ_CP018044.1_459956_461714_-	pfam00188, CAP, Cysteine-rich secretory protein family	NA|274aa|down_0|NZ_CP018044.1_464419_465241_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|345aa|down_1|NZ_CP018044.1_465691_466726_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|572aa|down_2|NZ_CP018044.1_466807_468523_-	NA	NA|491aa|down_3|NZ_CP018044.1_468930_470403_+	pfam02687, FtsX, FtsX-like permease family	NA|404aa|down_4|NZ_CP018044.1_470399_471611_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|238aa|down_5|NZ_CP018044.1_471721_472435_-	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein	NA|292aa|down_6|NZ_CP018044.1_472481_473357_-	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|729aa|down_7|NZ_CP018044.1_473514_475701_-	pfam02705, K_trans, K+ potassium transporter	NA|319aa|down_8|NZ_CP018044.1_475962_476919_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|789aa|down_9|NZ_CP018044.1_476915_479282_-	cd14791, GH36, glycosyl hydrolase family 36 (GH36)
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	4	462616-462832	4	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Orphan	TGACTTCCATCGATCTCAGCCATAACAC	28	0	0	NA	NA	NA	3	3	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA|157aa|up_5|NZ_CP018044.1_452289_452760_-,NA|572aa|down_2|NZ_CP018044.1_466807_468523_-	NA|860aa|up_9|NZ_CP018044.1_444504_447084_+	cd16015, LTA_synthase, Lipoteichoic acid synthase like	NA|645aa|up_8|NZ_CP018044.1_447249_449184_+	pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2	NA|536aa|up_7|NZ_CP018044.1_449275_450883_-	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains	NA|380aa|up_6|NZ_CP018044.1_451027_452167_-	pfam00395, SLH, S-layer homology domain	NA|157aa|up_5|NZ_CP018044.1_452289_452760_-	NA	NA|640aa|up_4|NZ_CP018044.1_453841_455761_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|264aa|up_3|NZ_CP018044.1_456003_456795_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|444aa|up_2|NZ_CP018044.1_456867_458199_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|436aa|up_1|NZ_CP018044.1_458226_459534_+	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|586aa|up_0|NZ_CP018044.1_459956_461714_-	pfam00188, CAP, Cysteine-rich secretory protein family	NA|274aa|down_0|NZ_CP018044.1_464419_465241_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|345aa|down_1|NZ_CP018044.1_465691_466726_+	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|572aa|down_2|NZ_CP018044.1_466807_468523_-	NA	NA|491aa|down_3|NZ_CP018044.1_468930_470403_+	pfam02687, FtsX, FtsX-like permease family	NA|404aa|down_4|NZ_CP018044.1_470399_471611_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|238aa|down_5|NZ_CP018044.1_471721_472435_-	TIGR00295, Uncharacterized_protein_MJ0778, TIGR00295 family protein	NA|292aa|down_6|NZ_CP018044.1_472481_473357_-	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|729aa|down_7|NZ_CP018044.1_473514_475701_-	pfam02705, K_trans, K+ potassium transporter	NA|319aa|down_8|NZ_CP018044.1_475962_476919_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|789aa|down_9|NZ_CP018044.1_476915_479282_-	cd14791, GH36, glycosyl hydrolase family 36 (GH36)
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	5	693530-693620	5	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Orphan	CTCGCCCCTCTGGTGTGCGCGGGCAGCGC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA|779aa|up_8|NZ_CP018044.1_677349_679686_-,NA|319aa|up_7|NZ_CP018044.1_679900_680857_-,NA|195aa|up_0|NZ_CP018044.1_692454_693039_+,NA|62aa|down_1|NZ_CP018044.1_695198_695384_-,NA|196aa|down_2|NZ_CP018044.1_695829_696417_-,NA|481aa|down_4|NZ_CP018044.1_698563_700006_-,NA|724aa|down_5|NZ_CP018044.1_700184_702356_+	NA|236aa|up_9|NZ_CP018044.1_676517_677225_-	pfam14267, DUF4357, Domain of unknown function (DUF4357)	NA|779aa|up_8|NZ_CP018044.1_677349_679686_-	NA	NA|319aa|up_7|NZ_CP018044.1_679900_680857_-	NA	NA|1035aa|up_6|NZ_CP018044.1_680996_684101_-	COG3587, COG3587, Restriction endonuclease [Defense mechanisms]	NA|675aa|up_5|NZ_CP018044.1_684102_686127_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|256aa|up_4|NZ_CP018044.1_686123_686891_-	pfam14335, DUF4391, Domain of unknown function (DUF4391)	NA|1087aa|up_3|NZ_CP018044.1_686898_690159_-	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|357aa|up_2|NZ_CP018044.1_690304_691375_+	pfam18504, Csm1_N, Csm1 N-terminal domain	NA|312aa|up_1|NZ_CP018044.1_691565_692501_+	pfam13248, zf-ribbon_3, zinc-ribbon domain	NA|195aa|up_0|NZ_CP018044.1_692454_693039_+	NA	NA|221aa|down_0|NZ_CP018044.1_694424_695087_-	pfam06940, DUF1287, Domain of unknown function (DUF1287)	NA|62aa|down_1|NZ_CP018044.1_695198_695384_-	NA	NA|196aa|down_2|NZ_CP018044.1_695829_696417_-	NA	NA|712aa|down_3|NZ_CP018044.1_696397_698533_-	TIGR04523, conserved_hypothetical_protein, helix-rich Mycoplasma protein	NA|481aa|down_4|NZ_CP018044.1_698563_700006_-	NA	NA|724aa|down_5|NZ_CP018044.1_700184_702356_+	NA	NA|217aa|down_6|NZ_CP018044.1_702377_703028_-	pfam03466, LysR_substrate, LysR substrate binding domain	NA|281aa|down_7|NZ_CP018044.1_702944_703787_+	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|161aa|down_8|NZ_CP018044.1_704146_704629_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|447aa|down_9|NZ_CP018044.1_704714_706055_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	6	1059669-1059934	2	CRT	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Orphan	GACGANCGTCCGCGCCGNCNNCG	23	1	2	1059692-1059713|1059692-1059713	NZ_CP018044.1_1538661-1538682|NZ_CP018044.1_1538799-1538820	NA	5	5	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA|237aa|up_2|NZ_CP018044.1_1054594_1055305_+,NA	NA|315aa|up_9|NZ_CP018044.1_1036590_1037535_+	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|265aa|up_8|NZ_CP018044.1_1038160_1038955_-	pfam02632, BioY, BioY family	NA|627aa|up_7|NZ_CP018044.1_1039677_1041558_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|557aa|up_6|NZ_CP018044.1_1041554_1043225_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|3113aa|up_5|NZ_CP018044.1_1043375_1052714_+	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|150aa|up_4|NZ_CP018044.1_1052905_1053355_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|156aa|up_3|NZ_CP018044.1_1053789_1054257_-	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|237aa|up_2|NZ_CP018044.1_1054594_1055305_+	NA	NA|324aa|up_1|NZ_CP018044.1_1055403_1056375_-	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases	NA|90aa|up_0|NZ_CP018044.1_1056805_1057075_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|325aa|down_0|NZ_CP018044.1_1060163_1061138_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|726aa|down_1|NZ_CP018044.1_1061275_1063453_-	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|142aa|down_2|NZ_CP018044.1_1063509_1063935_-	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|80aa|down_3|NZ_CP018044.1_1063931_1064171_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|260aa|down_4|NZ_CP018044.1_1064693_1065473_+	pfam04011, LemA, LemA family	NA|771aa|down_5|NZ_CP018044.1_1065954_1068267_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|592aa|down_6|NZ_CP018044.1_1068347_1070123_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|195aa|down_7|NZ_CP018044.1_1069875_1070460_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|288aa|down_8|NZ_CP018044.1_1070653_1071517_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|523aa|down_9|NZ_CP018044.1_1072152_1073721_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	7	1580830-1580973	6	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Orphan	TCAGGGGCGTCAGAATGTCACCCCTGA	27	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA|234aa|up_9|NZ_CP018044.1_1573991_1574693_+,NA|226aa|up_8|NZ_CP018044.1_1575197_1575875_+,NA|226aa|up_7|NZ_CP018044.1_1575886_1576564_-,NA|67aa|up_6|NZ_CP018044.1_1576857_1577058_-,NA|65aa|up_5|NZ_CP018044.1_1577290_1577485_-,NA|104aa|up_4|NZ_CP018044.1_1577768_1578080_+,NA|66aa|up_3|NZ_CP018044.1_1578462_1578660_+,NA|257aa|up_2|NZ_CP018044.1_1578668_1579439_-,NA|261aa|up_1|NZ_CP018044.1_1579449_1580232_-,NA|63aa|up_0|NZ_CP018044.1_1580267_1580456_+,NA|97aa|down_0|NZ_CP018044.1_1581729_1582020_+,NA|138aa|down_3|NZ_CP018044.1_1583433_1583847_+,NA|225aa|down_4|NZ_CP018044.1_1583929_1584604_+,NA|85aa|down_5|NZ_CP018044.1_1584764_1585019_+,NA|193aa|down_8|NZ_CP018044.1_1587504_1588083_+,NA|52aa|down_9|NZ_CP018044.1_1588247_1588403_-	NA|234aa|up_9|NZ_CP018044.1_1573991_1574693_+	NA	NA|226aa|up_8|NZ_CP018044.1_1575197_1575875_+	NA	NA|226aa|up_7|NZ_CP018044.1_1575886_1576564_-	NA	NA|67aa|up_6|NZ_CP018044.1_1576857_1577058_-	NA	NA|65aa|up_5|NZ_CP018044.1_1577290_1577485_-	NA	NA|104aa|up_4|NZ_CP018044.1_1577768_1578080_+	NA	NA|66aa|up_3|NZ_CP018044.1_1578462_1578660_+	NA	NA|257aa|up_2|NZ_CP018044.1_1578668_1579439_-	NA	NA|261aa|up_1|NZ_CP018044.1_1579449_1580232_-	NA	NA|63aa|up_0|NZ_CP018044.1_1580267_1580456_+	NA	NA|97aa|down_0|NZ_CP018044.1_1581729_1582020_+	NA	NA|330aa|down_1|NZ_CP018044.1_1582016_1583006_+	cd02042, ParAB_family, partition proteins ParAB family	NA|136aa|down_2|NZ_CP018044.1_1583029_1583437_+	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|138aa|down_3|NZ_CP018044.1_1583433_1583847_+	NA	NA|225aa|down_4|NZ_CP018044.1_1583929_1584604_+	NA	NA|85aa|down_5|NZ_CP018044.1_1584764_1585019_+	NA	NA|335aa|down_6|NZ_CP018044.1_1585074_1586079_-	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins	NA|420aa|down_7|NZ_CP018044.1_1586248_1587508_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|193aa|down_8|NZ_CP018044.1_1587504_1588083_+	NA	NA|52aa|down_9|NZ_CP018044.1_1588247_1588403_-	NA
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	8	2089547-2089647	7	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Orphan	CTTCTTCTTCGCCGTGCTCTTGCGCG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA|64aa|up_8|NZ_CP018044.1_2071071_2071263_+,NA|285aa|down_0|NZ_CP018044.1_2089955_2090810_-,NA|177aa|down_4|NZ_CP018044.1_2095313_2095844_+	NA|153aa|up_9|NZ_CP018044.1_2070314_2070773_+	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|64aa|up_8|NZ_CP018044.1_2071071_2071263_+	NA	NA|339aa|up_7|NZ_CP018044.1_2071307_2072324_-	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|655aa|up_6|NZ_CP018044.1_2072397_2074362_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|890aa|up_5|NZ_CP018044.1_2074533_2077203_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|320aa|up_4|NZ_CP018044.1_2077407_2078367_-	pfam06800, Sugar_transport, Sugar transport protein	NA|1577aa|up_3|NZ_CP018044.1_2078575_2083306_-	PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional	NA|396aa|up_2|NZ_CP018044.1_2083376_2084564_-	cd17333, MFS_FucP_MFSD4_like, Bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4, and similar proteins	NA|380aa|up_1|NZ_CP018044.1_2084693_2085833_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|777aa|up_0|NZ_CP018044.1_2085869_2088200_-	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed	NA|285aa|down_0|NZ_CP018044.1_2089955_2090810_-	NA	NA|363aa|down_1|NZ_CP018044.1_2091078_2092167_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|713aa|down_2|NZ_CP018044.1_2092251_2094390_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|242aa|down_3|NZ_CP018044.1_2094539_2095265_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|177aa|down_4|NZ_CP018044.1_2095313_2095844_+	NA	NA|350aa|down_5|NZ_CP018044.1_2095874_2096924_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|978aa|down_6|NZ_CP018044.1_2097121_2100055_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|229aa|down_7|NZ_CP018044.1_2100315_2101002_-	pfam16321, Ribosom_S30AE_C, Sigma 54 modulation/S30EA ribosomal protein C-terminus	NA|242aa|down_8|NZ_CP018044.1_2101577_2102303_-	pfam02631, RecX, RecX family	NA|387aa|down_9|NZ_CP018044.1_2102590_2103751_-	PRK09354, recA, recombinase A; Provisional
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	9	2122695-2122823	8	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Orphan	CCGCACCCGTTCCGTTCGCAACG	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA,NA|88aa|down_3|NZ_CP018044.1_2126411_2126675_+,NA|84aa|down_6|NZ_CP018044.1_2133238_2133490_+	NA|482aa|up_9|NZ_CP018044.1_2110578_2112024_-	PRK14326, PRK14326, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|259aa|up_8|NZ_CP018044.1_2112162_2112939_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|278aa|up_7|NZ_CP018044.1_2113055_2113889_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|342aa|up_6|NZ_CP018044.1_2114167_2115193_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|267aa|up_5|NZ_CP018044.1_2115404_2116205_-	pfam13228, DUF4037, Domain of unknown function (DUF4037)	NA|213aa|up_4|NZ_CP018044.1_2116963_2117602_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|up_3|NZ_CP018044.1_2117607_2118825_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|342aa|up_2|NZ_CP018044.1_2118997_2120023_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|430aa|up_1|NZ_CP018044.1_2120062_2121352_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|418aa|up_0|NZ_CP018044.1_2121386_2122640_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|692aa|down_0|NZ_CP018044.1_2122863_2124939_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|215aa|down_1|NZ_CP018044.1_2124928_2125573_-	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|218aa|down_2|NZ_CP018044.1_2125625_2126279_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|88aa|down_3|NZ_CP018044.1_2126411_2126675_+	NA	NA|901aa|down_4|NZ_CP018044.1_2126805_2129508_-	PRK09277, PRK09277, aconitate hydratase AcnA	NA|841aa|down_5|NZ_CP018044.1_2129569_2132092_-	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|84aa|down_6|NZ_CP018044.1_2133238_2133490_+	NA	NA|217aa|down_7|NZ_CP018044.1_2133562_2134213_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|94aa|down_8|NZ_CP018044.1_2134237_2134519_-	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein	NA|76aa|down_9|NZ_CP018044.1_2134568_2134796_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]
GCF_002761235.1_ASM276123v1	NZ_CP018044	Bifidobacterium choerinum strain FMB-1, complete genome	10	2229820-2230003	9	CRISPRCasFinder	no		DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	Orphan	GCCGGTTTTCGGGTCGATCGTCGCGCCG	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,WYL	NA|114aa|up_8|NZ_CP018044.1_2219159_2219501_-,NA|160aa|up_7|NZ_CP018044.1_2219516_2219996_-,NA|195aa|up_6|NZ_CP018044.1_2220558_2221143_-,NA|46aa|up_5|NZ_CP018044.1_2221135_2221273_-,NA|408aa|up_2|NZ_CP018044.1_2226114_2227338_-,NA|305aa|up_1|NZ_CP018044.1_2227350_2228265_-,NA|321aa|up_0|NZ_CP018044.1_2228276_2229239_-,NA|109aa|down_0|NZ_CP018044.1_2232604_2232931_-,NA|171aa|down_1|NZ_CP018044.1_2232984_2233497_-,NA|177aa|down_2|NZ_CP018044.1_2233573_2234104_-,NA|132aa|down_3|NZ_CP018044.1_2234168_2234564_-,NA|124aa|down_4|NZ_CP018044.1_2234565_2234937_-,NA|151aa|down_5|NZ_CP018044.1_2234929_2235382_-,NA|176aa|down_8|NZ_CP018044.1_2236798_2237326_-,NA|91aa|down_9|NZ_CP018044.1_2237422_2237695_-	NA|324aa|up_9|NZ_CP018044.1_2218112_2219084_-	pfam08230, CW_7, CW_7 repeat	NA|114aa|up_8|NZ_CP018044.1_2219159_2219501_-	NA	NA|160aa|up_7|NZ_CP018044.1_2219516_2219996_-	NA	NA|195aa|up_6|NZ_CP018044.1_2220558_2221143_-	NA	NA|46aa|up_5|NZ_CP018044.1_2221135_2221273_-	NA	NA|405aa|up_4|NZ_CP018044.1_2221288_2222503_-	pfam09479, Flg_new, Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA|1173aa|up_3|NZ_CP018044.1_2222577_2226096_-	pfam01391, Collagen, Collagen triple helix repeat (20 copies)	NA|408aa|up_2|NZ_CP018044.1_2226114_2227338_-	NA	NA|305aa|up_1|NZ_CP018044.1_2227350_2228265_-	NA	NA|321aa|up_0|NZ_CP018044.1_2228276_2229239_-	NA	NA|109aa|down_0|NZ_CP018044.1_2232604_2232931_-	NA	NA|171aa|down_1|NZ_CP018044.1_2232984_2233497_-	NA	NA|177aa|down_2|NZ_CP018044.1_2233573_2234104_-	NA	NA|132aa|down_3|NZ_CP018044.1_2234168_2234564_-	NA	NA|124aa|down_4|NZ_CP018044.1_2234565_2234937_-	NA	NA|151aa|down_5|NZ_CP018044.1_2234929_2235382_-	NA	NA|157aa|down_6|NZ_CP018044.1_2235348_2235819_-	TIGR04383, hypothetical_protein_HMPREF1015_01194, processed acidic surface protein	NA|318aa|down_7|NZ_CP018044.1_2235825_2236779_-	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family	NA|176aa|down_8|NZ_CP018044.1_2236798_2237326_-	NA	NA|91aa|down_9|NZ_CP018044.1_2237422_2237695_-	NA
