The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020989	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6996R chromosome, complete genome	5078988	2129994	2176595	5078988	plate,transposase,terminase,protease,capsid,tail,head,portal,holin,integrase	Stenotrophomonas_phage(59.46%)	55	2163567:2163584	2179535:2179552
WP_003483788.1|2129994_2131281_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.9	5.3e-137
WP_002806026.1|2131406_2132033_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.4	1.0e-56
WP_007968966.1|2132125_2133418_-	trigger factor	NA	NA	NA	NA	NA
WP_099803755.1|2133946_2135215_+	PAS domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_131469915.1|2135433_2135682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099804865.1|2135843_2136833_-	chemotaxis protein CheB	NA	NA	NA	NA	NA
WP_011345585.1|2139258_2140485_+|transposase	IS256-like element ISXax1 family transposase	transposase	A0A218MNI5	uncultured_virus	50.3	2.2e-52
WP_099803754.1|2141812_2142963_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	63.3	1.3e-97
WP_089094894.1|2144216_2144633_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_089094893.1|2144803_2145505_-	site-specific DNA-methyltransferase	NA	V9IQV5	Stenotrophomonas_phage	76.5	3.8e-105
WP_078560558.1|2145422_2145668_-	Com family DNA-binding transcriptional regulator	NA	V9IQK2	Stenotrophomonas_phage	53.8	2.8e-15
WP_099803753.1|2145693_2146707_-|portal	phage portal protein	portal	A0A2H4J922	uncultured_Caudovirales_phage	71.9	1.5e-139
WP_099803752.1|2146706_2148491_-|terminase	terminase ATPase subunit family protein	terminase	V9IQL5	Stenotrophomonas_phage	76.7	2.1e-272
WP_099803751.1|2148612_2149455_+|capsid	GPO family capsid scaffolding protein	capsid	A0A2H4J928	uncultured_Caudovirales_phage	53.3	2.2e-67
WP_099803750.1|2149499_2150519_+|capsid	phage major capsid protein, P2 family	capsid	Q9ZXM3	Pseudomonas_virus	70.6	3.5e-136
WP_099803749.1|2150522_2151242_+|terminase	terminase	terminase	Q9ZXM2	Pseudomonas_virus	62.1	3.8e-68
WP_099803748.1|2151340_2151808_+|head	head completion/stabilization protein	head	V9IQW6	Stenotrophomonas_phage	49.7	1.8e-31
WP_039586330.1|2151807_2152017_+|tail	tail protein	tail	K4PAW7	Burkholderia_phage	58.0	2.7e-14
WP_005929454.1|2152021_2152378_+	membrane protein	NA	V9IQG9	Stenotrophomonas_phage	56.1	3.5e-22
WP_005922189.1|2152370_2152646_+|holin	phage holin family protein	holin	V9IQV8	Stenotrophomonas_phage	59.8	1.3e-21
WP_099803747.1|2152642_2153284_+	glycoside hydrolase family 19 protein	NA	V9IQK6	Stenotrophomonas_phage	59.8	5.1e-48
WP_099803746.1|2153283_2153772_+	hypothetical protein	NA	V9IQW8	Stenotrophomonas_phage	53.6	5.3e-29
WP_099803745.1|2153768_2154188_+|tail	phage tail protein	tail	A0A2H4J906	uncultured_Caudovirales_phage	64.4	9.7e-40
WP_099803744.1|2154175_2154637_+	phage virion morphogenesis protein	NA	V9IQH0	Stenotrophomonas_phage	54.1	6.1e-35
WP_133125214.1|2154617_2155034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099828367.1|2155540_2156431_+|plate	baseplate assembly protein	plate	V9IQV9	Stenotrophomonas_phage	53.0	4.0e-83
WP_099803743.1|2156423_2156969_+|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	56.0	4.9e-52
WP_099803742.1|2156981_2158781_+	hypothetical protein	NA	V9IQX0	Stenotrophomonas_phage	39.0	2.3e-85
WP_099803741.1|2158853_2159147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099803740.1|2159149_2159824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099803739.1|2159965_2160529_+|plate	phage baseplate assembly protein V	plate	Q9ZXL0	Pseudomonas_virus	47.0	4.8e-26
WP_099803738.1|2160525_2160885_+|plate	baseplate assembly protein	plate	V9IQW0	Stenotrophomonas_phage	63.6	1.6e-35
WP_099803737.1|2160896_2162063_+|tail	phage tail sheath protein	tail	E5FFG9	Burkholderia_phage	62.1	1.6e-132
WP_099803736.1|2162092_2162602_+|tail	phage major tail tube protein	tail	V9IQX1	Stenotrophomonas_phage	76.3	8.4e-70
WP_008572745.1|2162647_2162950_+|tail	phage tail assembly protein	tail	V9IQM4	Stenotrophomonas_phage	67.4	2.2e-25
WP_005922203.1|2162958_2163072_+|tail	GpE family phage tail protein	tail	A0A0M4R2P3	Salmonella_phage	68.6	4.2e-06
WP_099803735.1|2163101_2165972_+|tail	phage tail tape measure protein	tail	V9IQL1	Stenotrophomonas_phage	48.7	3.9e-204
2163567:2163584	attL	CGCGCCCAGCAGCAGCGC	NA	NA	NA	NA
WP_099803734.1|2165984_2166386_+|tail	phage tail protein	tail	V9IQX3	Stenotrophomonas_phage	62.9	3.2e-40
WP_099803733.1|2166382_2167369_+	phage late control D family protein	NA	V9IQM7	Stenotrophomonas_phage	52.6	2.4e-89
WP_133125215.1|2167456_2167933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099803732.1|2168162_2168600_-	helix-turn-helix transcriptional regulator	NA	E5E3P4	Burkholderia_phage	32.9	6.4e-10
WP_008572763.1|2168670_2168928_+	DNA-binding protein	NA	A0A2H4JE67	uncultured_Caudovirales_phage	44.6	6.6e-07
WP_099828366.1|2168930_2169251_+	hypothetical protein	NA	V9IQW3	Stenotrophomonas_phage	57.6	2.6e-24
WP_099828365.1|2169261_2169540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008572770.1|2169536_2169749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099828404.1|2169782_2172455_+	bifunctional DNA primase/helicase	NA	V9IQW5	Stenotrophomonas_phage	69.6	0.0e+00
WP_099828364.1|2172778_2172997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099828363.1|2172993_2173281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099828362.1|2173280_2173553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077708921.1|2173682_2174057_+	hypothetical protein	NA	V9IQL6	Stenotrophomonas_phage	46.1	2.4e-18
WP_014091203.1|2174049_2174232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016851002.1|2174224_2174497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099828361.1|2174493_2174718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_089112962.1|2174783_2174987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099828403.1|2175635_2176595_+|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	56.2	9.2e-94
2179535:2179552	attR	CGCGCCCAGCAGCAGCGC	NA	NA	NA	NA
>prophage 2
NZ_CP020989	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6996R chromosome, complete genome	5078988	3366999	3430773	5078988	protease,tail,tRNA	Bacillus_phage(22.22%)	59	NA	NA
WP_003482177.1|3366999_3367692_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_007968187.1|3367909_3369250_+	outer membrane protein transport protein	NA	NA	NA	NA	NA
WP_007971900.1|3369515_3370217_+	2OG-Fe(II) oxygenase	NA	E3SK61	Synechococcus_phage	47.2	1.0e-17
WP_099803337.1|3370403_3371531_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_042676190.1|3371654_3372020_-	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_099803336.1|3372068_3372794_-	YafY family transcriptional regulator	NA	NA	NA	NA	NA
WP_099803335.1|3373094_3374555_+	cardiolipin synthase	NA	NA	NA	NA	NA
WP_005912451.1|3374629_3374899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007968197.1|3374906_3375674_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_007971889.1|3375926_3376334_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_005912449.1|3376880_3377294_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_005912447.1|3377297_3377720_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_005912445.1|3377766_3378528_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005912443.1|3378613_3379285_-	energy transducer TonB	NA	NA	NA	NA	NA
WP_007968206.1|3379438_3380632_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_005912440.1|3380909_3381716_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_022557777.1|3381900_3382737_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_089094340.1|3382804_3385249_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.7	1.6e-113
WP_099803334.1|3385363_3386470_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_005912436.1|3387513_3388614_-	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	37.1	1.1e-53
WP_007968215.1|3388890_3390219_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_002805908.1|3390461_3390602_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_007968218.1|3390640_3391078_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_022560505.1|3391103_3392828_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_099803333.1|3394405_3395746_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_099206281.1|3395907_3396765_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_099803332.1|3396957_3399258_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_099803331.1|3399497_3400592_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_099803330.1|3400711_3401497_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_039571260.1|3401835_3402792_-	TerC family protein	NA	K4F9T9	Cronobacter_phage	30.6	1.0e-31
WP_007968235.1|3403056_3404223_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA	NA
WP_022560498.1|3404341_3404662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099803329.1|3404948_3406205_+	peptidase M19	NA	NA	NA	NA	NA
WP_099803328.1|3406684_3407995_+	MFS transporter	NA	NA	NA	NA	NA
WP_099803327.1|3408020_3409190_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	39.0	1.2e-42
WP_089096453.1|3409423_3410635_+	carbohydrate diacid regulon transcriptional regulator CdaR	NA	NA	NA	NA	NA
WP_099803326.1|3410726_3412475_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	31.6	5.3e-15
WP_099803325.1|3412595_3412985_+	DUF2628 domain-containing protein	NA	NA	NA	NA	NA
WP_099803324.1|3413837_3416312_+	glycoside hydrolase family 92 protein	NA	NA	NA	NA	NA
WP_007971149.1|3416542_3417958_-	amino acid permease	NA	NA	NA	NA	NA
WP_007968252.1|3418174_3418555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007968253.1|3418693_3419314_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_033481426.1|3419477_3419708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158525792.1|3419984_3420131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099803323.1|3420267_3421848_+	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_099802889.1|3422066_3422456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007968256.1|3422609_3423155_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	33.9	2.0e-16
WP_089142542.1|3423158_3423539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_089142541.1|3423671_3424727_-	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_022560466.1|3424737_3425028_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_003482305.1|3425017_3425680_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_022560464.1|3425676_3426222_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_003482308.1|3426233_3426983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_099803322.1|3426982_3427777_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	27.2	4.9e-08
WP_011257259.1|3428160_3428448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099803321.1|3428466_3429024_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_099803320.1|3429028_3429565_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_007968270.1|3429625_3430153_-|tail	phage tail protein	tail	A0A0U4JYA4	Arthrobacter_phage	28.0	1.0e-09
WP_007968272.1|3430221_3430773_-|tail	phage tail protein	tail	NA	NA	NA	NA
>prophage 3
NZ_CP020989	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6996R chromosome, complete genome	5078988	4284778	4294886	5078988	transposase	Staphylococcus_phage(16.67%)	8	NA	NA
WP_099860190.1|4284778_4285999_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.3	8.0e-10
WP_099804664.1|4285998_4287285_+	FkbM family methyltransferase	NA	A0A1V0SAF0	Catovirus	26.4	1.8e-12
WP_099804663.1|4287284_4290995_+	glycosyltransferase	NA	A0A218MKE2	uncultured_virus	24.2	1.7e-15
WP_089095950.1|4290991_4292026_+	GDP-mannose 4,6-dehydratase	NA	A0A1J0F996	Only_Syngen_Nebraska_virus	56.6	2.3e-106
WP_099804662.1|4292003_4292915_+	NAD-dependent epimerase/dehydratase family protein	NA	E5ES47	Bathycoccus_sp._RCC1105_virus	21.6	5.3e-06
WP_099804661.1|4292993_4293470_+	GtrA family protein	NA	NA	NA	NA	NA
WP_099804660.1|4293541_4293676_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_099803754.1|4293736_4294886_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	63.3	1.3e-97
>prophage 4
NZ_CP020989	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6996R chromosome, complete genome	5078988	4305999	4314022	5078988		Escherichia_phage(28.57%)	7	NA	NA
WP_099804655.1|4305999_4307055_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	45.3	3.2e-79
WP_007971516.1|4307106_4307994_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	57.4	1.5e-93
WP_007971517.1|4307990_4308548_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	48.3	3.9e-44
WP_099804654.1|4308544_4309444_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.8	1.2e-26
WP_089095960.1|4309784_4310951_+	nucleotide sugar dehydrogenase	NA	M1HZB2	Paramecium_bursaria_Chlorella_virus	58.4	7.2e-117
WP_007962673.1|4311225_4312629_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.8	4.2e-47
WP_099804653.1|4312675_4314022_-	phosphomannomutase	NA	A0A127AWJ1	Bacillus_phage	27.1	2.0e-33
