The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	0	12152	1033629	transposase	Bodo_saltans_virus(50.0%)	9	NA	NA
WP_013954486.1|999_2400_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_013954487.1|2534_3644_+	DNA polymerase III subunit beta	NA	NA	NA	NA	NA
WP_013954488.1|3647_3875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954489.1|4356_5601_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	3.1e-09
WP_013954491.1|7194_7980_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013954492.1|7981_8773_+	alpha/beta hydrolase	NA	G9E3U1	Emiliania_huxleyi_virus	19.7	7.8e-06
WP_013954493.1|8824_10006_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_014829847.1|9998_11045_-	lipoate--protein ligase A	NA	A0A2H4UVX5	Bodo_saltans_virus	26.2	7.1e-15
WP_013954495.1|11114_12152_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	25.6	2.7e-14
>prophage 2
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	17462	19067	1033629		Amsacta_moorei_entomopoxvirus(100.0%)	1	NA	NA
WP_013456518.1|17462_19067_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	26.4	1.2e-10
>prophage 3
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	22302	23620	1033629		Lactobacillus_virus(100.0%)	2	NA	NA
WP_013456248.1|22302_22965_+	deoxynucleoside kinase	NA	Q5ULP7	Lactobacillus_virus	27.6	2.9e-06
WP_013456161.1|22966_23620_+	deoxynucleoside kinase	NA	Q5ULP7	Lactobacillus_virus	26.2	1.9e-05
>prophage 4
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	28077	29106	1033629	transposase	Faecalibacterium_phage(100.0%)	1	NA	NA
WP_078086163.1|28077_29106_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
>prophage 5
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	32146	38461	1033629		Anomala_cuprea_entomopoxvirus(33.33%)	6	NA	NA
WP_013954500.1|32146_33169_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.7	3.6e-27
WP_013456151.1|33275_33623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954501.1|33597_35019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456307.1|35011_35443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456564.1|35514_36849_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	30.7	4.5e-06
WP_013456445.1|36841_38461_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	6.0e-13
>prophage 6
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	55257	56499	1033629	tRNA	Catovirus(100.0%)	1	NA	NA
WP_099620117.1|55257_56499_+|tRNA	class I tRNA ligase family protein	tRNA	A0A1V0SAQ2	Catovirus	30.9	6.9e-41
>prophage 7
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	69570	70359	1033629		Streptococcus_phage(100.0%)	1	NA	NA
WP_013954518.1|69570_70359_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	E4ZFQ0	Streptococcus_phage	25.7	4.0e-10
>prophage 8
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	74462	75731	1033629	tRNA	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_013954523.1|74462_75731_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.3	2.6e-80
>prophage 9
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	79927	94751	1033629	tRNA	Bodo_saltans_virus(25.0%)	10	NA	NA
WP_013954527.1|79927_80908_+	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	27.1	3.9e-15
WP_013954528.1|80911_81733_+	alpha/beta hydrolase	NA	G9E3U1	Emiliania_huxleyi_virus	32.5	2.3e-08
WP_013954529.1|81816_82581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954530.1|82573_83554_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	40.6	8.1e-53
WP_013954531.1|83678_88055_+	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	31.8	6.2e-12
WP_013954532.1|88460_89684_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	35.1	1.5e-61
WP_013456569.1|89673_90639_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	40.9	3.6e-29
WP_013954533.1|90628_91288_+	uracil-DNA glycosylase	NA	A0A068EP41	Falconid_herpesvirus	36.4	1.6e-28
WP_013954534.1|91289_93476_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_013954535.1|93485_94751_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	51.1	3.6e-98
>prophage 10
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	112353	113277	1033629		Bacillus_virus(100.0%)	1	NA	NA
WP_013954557.1|112353_113277_+	FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	41.2	1.5e-61
>prophage 11
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	117501	120413	1033629	transposase	Erysipelothrix_phage(50.0%)	2	NA	NA
WP_099620119.1|117501_119115_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.3	7.8e-37
WP_099620154.1|119384_120413_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	32.9	3.2e-20
>prophage 12
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	128394	131935	1033629		Bacillus_virus(50.0%)	2	NA	NA
WP_013456492.1|128394_129543_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.0	4.1e-08
WP_013954563.1|129532_131935_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.6	2.2e-11
>prophage 13
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	137452	139510	1033629		Indivirus(100.0%)	1	NA	NA
WP_013954569.1|137452_139510_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	30.4	8.5e-12
>prophage 14
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	142843	144280	1033629	tRNA	Klosneuvirus(100.0%)	1	NA	NA
WP_013954575.1|142843_144280_+|tRNA	proline--tRNA ligase	tRNA	A0A1V0SJ28	Klosneuvirus	37.9	2.4e-93
>prophage 15
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	150139	159746	1033629	transposase	Mycoplasma_phage(57.14%)	7	NA	NA
WP_013455927.1|150139_151156_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.6	8.4e-37
WP_014829869.1|151483_153325_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	19.1	2.7e-17
WP_099620121.1|153586_154999_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	68.7	1.6e-81
WP_013954582.1|154982_155819_+	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	62.0	1.5e-87
WP_013954583.1|155811_156705_+	spermidine/putrescine ABC transporter permease	NA	Q6GZ01	Mycoplasma_phage	62.1	2.1e-92
WP_013954584.1|156691_158593_+	membrane protein	NA	Q6GZ00	Mycoplasma_phage	34.7	1.8e-80
WP_013455927.1|158729_159746_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.6	8.4e-37
>prophage 16
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	170172	173525	1033629	tRNA	Catovirus(50.0%)	2	NA	NA
WP_013954590.1|170172_172662_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.1	2.1e-137
WP_013954591.1|172664_173525_+	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.0	1.3e-33
>prophage 17
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	185268	190099	1033629	tRNA	Acanthamoeba_polyphaga_mimivirus(50.0%)	4	NA	NA
WP_013954599.1|185268_187065_+	molecular chaperone DnaK	NA	A0A0G2YAL1	Acanthamoeba_polyphaga_mimivirus	46.5	2.0e-129
WP_013954600.1|187146_188430_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_013954601.1|188588_188972_+	membrane protein	NA	NA	NA	NA	NA
WP_013954602.1|189109_190099_-	lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.9	1.8e-39
>prophage 18
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	204742	205771	1033629	transposase	Faecalibacterium_phage(100.0%)	1	NA	NA
WP_078086166.1|204742_205771_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	3.8e-21
>prophage 19
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	210690	214543	1033629		Bacillus_phage(50.0%)	2	NA	NA
WP_013954619.1|210690_211608_-	5'-3' exonuclease	NA	A0A0N7ACJ6	Bacillus_phage	31.1	1.3e-31
WP_013954620.1|211609_214543_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	34.4	1.0e-87
>prophage 20
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	223424	224453	1033629	transposase	Faecalibacterium_phage(100.0%)	1	NA	NA
WP_078086163.1|223424_224453_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
>prophage 21
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	241096	251970	1033629		Bacillus_virus(50.0%)	9	NA	NA
WP_013954631.1|241096_243013_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.9	5.7e-119
WP_099620122.1|243026_245612_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	29.6	1.3e-89
WP_013954633.1|245753_246683_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_013954634.1|246684_247401_+	ribonuclease HIII	NA	NA	NA	NA	NA
WP_013954635.1|247588_248563_+	DNA cytosine methyltransferase	NA	R4TMW4	Halovirus	38.4	1.6e-48
WP_013954636.1|248555_249263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456076.1|249732_250062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954638.1|250304_251000_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_014829885.1|250983_251970_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	35.7	2.2e-42
>prophage 22
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	258017	258572	1033629		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_013954648.1|258017_258572_-	inorganic diphosphatase	NA	A0A1B1ISK6	uncultured_Mediterranean_phage	39.1	2.1e-21
>prophage 23
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	263276	263612	1033629		Mycobacterium_phage(100.0%)	1	NA	NA
WP_013954652.1|263276_263612_+	HIT family protein	NA	B5LJ12	Mycobacterium_phage	33.8	3.6e-05
>prophage 25
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	351762	352596	1033629		Streptococcus_phage(100.0%)	1	NA	NA
WP_013954698.1|351762_352596_+	DNA adenine methylase	NA	A0A1S5PRR3	Streptococcus_phage	45.7	3.6e-54
>prophage 26
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	356733	443522	1033629	transposase,tRNA	Faecalibacterium_phage(15.0%)	55	NA	NA
WP_013954702.1|356733_357237_-	hypothetical protein	NA	S6AVW3	Thermus_phage	32.8	5.6e-10
WP_013954703.1|357539_359213_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013954704.1|359526_360891_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014829907.1|361273_362947_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_013954705.1|363076_363862_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_013954706.1|363866_365396_-	RNA polymerase sigma factor	NA	G8CLC7	Synechococcus_phage	33.7	2.0e-29
WP_013954707.1|365388_367329_-	DNA primase	NA	A0A1S5RFD7	Helicobacter_phage	35.3	5.7e-42
WP_013954708.1|367370_368747_-|tRNA	glycine--tRNA ligase	tRNA	A0A2I2L3K8	Orpheovirus	32.0	3.9e-53
WP_013954709.1|368858_370646_-	membrane protein	NA	NA	NA	NA	NA
WP_099620128.1|371096_372452_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_013456298.1|372454_373387_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.0	1.3e-07
WP_013456124.1|373350_375102_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_013456114.1|375208_375454_-	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_013954711.1|375534_378054_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_038582866.1|378290_379337_+	zinc-dependent alcohol dehydrogenase family protein	NA	A0A0K0KVL7	Prochlorococcus_phage	26.9	1.0e-13
WP_013954712.1|379485_381324_-	type I DNA topoisomerase	NA	A0A2P1ELA0	Moumouvirus	32.1	4.8e-75
WP_013456432.1|381703_382141_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_013456362.1|382182_382581_+	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	30.3	9.3e-08
WP_013456088.1|382600_382927_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_013954713.1|383061_384390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078086163.1|384627_385656_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013456295.1|385999_386455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954715.1|386505_388176_-	APC family permease	NA	NA	NA	NA	NA
WP_013954716.1|388414_389731_+|tRNA	histidine--tRNA ligase	tRNA	A0A2K9L0H9	Tupanvirus	25.1	2.7e-11
WP_013456122.1|389799_391503_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	23.1	2.0e-14
WP_013954717.1|391586_392831_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	4.1e-09
WP_013456084.1|392929_393721_-	aquaporin family protein	NA	M1HQW3	Paramecium_bursaria_Chlorella_virus	27.5	7.3e-12
WP_013954718.1|393729_395238_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_013456345.1|395527_396919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954719.1|397051_398053_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_013456401.1|398054_399023_-	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_013456470.1|399136_399880_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_013456409.1|400059_400344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456558.1|400336_401983_+	DAK2 domain-containing protein	NA	NA	NA	NA	NA
WP_013456463.1|401989_402994_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_013456004.1|402986_403661_+	ribonuclease III	NA	M4QMG4	Micromonas_pusilla_virus	31.9	1.2e-18
WP_013954720.1|403734_406713_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_013954721.1|406765_408118_-	YitT family protein	NA	NA	NA	NA	NA
WP_013954722.1|408212_409049_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_013954723.1|409035_409767_-	DNA processing protein DprA	NA	NA	NA	NA	NA
WP_038582875.1|409993_411034_+	zinc-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	29.7	5.2e-34
WP_038582700.1|411349_412378_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_013954726.1|412642_415444_-	C1 family peptidase	NA	NA	NA	NA	NA
WP_013954727.1|415672_422704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078086171.1|426525_427554_-|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.0	5.0e-21
WP_013954737.1|427997_430142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099620129.1|430951_432001_+	zinc-dependent alcohol dehydrogenase	NA	A0A0G2YAX3	Acanthamoeba_polyphaga_mimivirus	29.2	1.8e-34
WP_013954740.1|432044_433292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075271400.1|433276_434074_-	DNA (cytosine-5-)-methyltransferase	NA	A0A140HLV8	Bacillus_phage	40.5	9.8e-25
WP_099620130.1|434000_434483_-	DNA methyltransferase	NA	NA	NA	NA	NA
WP_013954660.1|435985_437374_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_078086151.1|437817_438732_-	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_078086172.1|438977_440006_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	32.1	1.2e-19
WP_013954750.1|440327_441743_-	DUF285 domain-containing protein	NA	NA	NA	NA	NA
WP_013954751.1|442040_443522_+	AAA family ATPase	NA	E3T5S4	Cafeteria_roenbergensis_virus	27.7	6.1e-28
>prophage 27
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	451535	454178	1033629	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_013954756.1|451535_454178_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	36.1	6.5e-65
>prophage 28
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	457920	459420	1033629		Bacillus_phage(50.0%)	2	NA	NA
WP_013954760.1|457920_458643_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	33.8	1.4e-06
WP_013954761.1|458967_459420_+	SocA family protein	NA	A0A0N9SGM1	Paenibacillus_phage	41.0	2.0e-22
>prophage 29
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	480316	554342	1033629	transposase,tRNA	Faecalibacterium_phage(22.22%)	60	NA	NA
WP_013954660.1|480316_481705_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_013954782.1|485282_485927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954783.1|486245_487478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013455996.1|488390_488882_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_013456577.1|488871_489423_+	hypoxanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_013456513.1|489524_490004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456428.1|490206_491310_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_013954784.1|491350_492160_-	DUF45 domain-containing protein	NA	NA	NA	NA	NA
WP_013954785.1|492131_492818_-	NERD domain-containing protein	NA	NA	NA	NA	NA
WP_013954786.1|492833_495665_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	52.6	1.7e-276
WP_013954787.1|495666_497676_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_013954788.1|497795_498743_+	DNA cytosine methyltransferase	NA	V5URQ5	Oenococcus_phage	63.3	2.4e-110
WP_014829932.1|499010_499463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954789.1|499474_501034_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_013954790.1|501512_502373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099620132.1|502380_502893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954792.1|502921_505945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954794.1|506219_506888_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_013456303.1|507095_507524_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_013954796.1|507525_508428_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_013954797.1|508468_509686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954798.1|509722_510865_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_013954799.1|510926_511304_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
WP_013954800.1|511582_512266_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_013954801.1|512275_514222_+	M13 family metallopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.7	1.3e-70
WP_013954802.1|514231_514792_+	single-stranded DNA-binding protein	NA	B8R683	Lactobacillus_phage	41.0	1.4e-14
WP_013456196.1|514912_515539_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_038582742.1|515507_516236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954804.1|516256_518596_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	33.7	2.6e-110
WP_013954805.1|518673_521805_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	44.0	7.1e-135
WP_013455922.1|521905_522622_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_013456007.1|522810_523317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456419.1|523421_524333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954806.1|524468_524882_-	ATP synthase F1 subunit epsilon	NA	NA	NA	NA	NA
WP_013456276.1|524897_526361_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_013456581.1|526413_527277_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_013954807.1|527269_528856_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_013954808.1|528848_529409_-	ATP synthase F1 subunit delta	NA	NA	NA	NA	NA
WP_099620133.1|529411_529984_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_013456149.1|529988_530216_-	ATP synthase F0 subunit C	NA	NA	NA	NA	NA
WP_013456258.1|530231_531050_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_099620134.1|531050_531488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954811.1|531687_533361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954812.1|533622_534426_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_078086173.1|534900_535929_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	32.9	1.1e-20
WP_014829937.1|536180_536882_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_014829938.1|537493_537934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954815.1|537926_539675_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.9	2.9e-101
WP_014829939.1|539682_540678_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_013954817.1|540794_541550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954818.1|541730_543167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829940.1|543200_543512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829941.1|543582_545256_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_078086175.1|545657_546686_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	3.8e-21
WP_014829944.1|548213_548477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014829945.1|548631_549183_-	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_048349622.1|549478_550537_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_099620135.1|550709_552383_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_153700565.1|552391_552541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013456029.1|552929_554342_-|transposase	IS1634-like element ISMbov2 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	575372	580410	1033629	tRNA	Moraxella_phage(33.33%)	5	NA	NA
WP_013954827.1|575372_576302_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	36.6	3.2e-51
WP_013954828.1|576303_576861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954829.1|576860_577265_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_004024476.1|577458_578649_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	26.2	8.9e-30
WP_013954830.1|579045_580410_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	54.4	1.7e-125
>prophage 31
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	583439	584279	1033629		Bacillus_phage(100.0%)	1	NA	NA
WP_013954833.1|583439_584279_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	F8WPX6	Bacillus_phage	31.8	8.5e-27
>prophage 32
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	587671	591278	1033629		Mycoplasma_phage(50.0%)	2	NA	NA
WP_013954837.1|587671_589468_+	ABC transporter ATP-binding protein	NA	Q6GYZ6	Mycoplasma_phage	42.1	2.5e-31
WP_013456600.1|589460_591278_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.9	7.5e-36
>prophage 33
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	597309	602581	1033629	tRNA	Moumouvirus(50.0%)	4	NA	NA
WP_013954840.1|597309_598668_+|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	34.0	1.2e-67
WP_013456111.1|598677_599682_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_013954841.1|599683_600352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954842.1|600376_602581_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.2	2.1e-93
>prophage 34
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	629813	634637	1033629	transposase	Clostridium_botulinum_C_phage(50.0%)	3	NA	NA
WP_013954859.1|629813_631778_-	NAD-dependent DNA ligase LigA	NA	Q332J4	Clostridium_botulinum_C_phage	31.7	6.7e-83
WP_013954860.1|631911_633159_+	membrane protein	NA	NA	NA	NA	NA
WP_099620157.1|633608_634637_-|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	32.6	1.5e-20
>prophage 35
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	658023	659988	1033629		Clostridium_botulinum_C_phage(100.0%)	1	NA	NA
WP_013954859.1|658023_659988_-	NAD-dependent DNA ligase LigA	NA	Q332J4	Clostridium_botulinum_C_phage	31.7	6.7e-83
>prophage 36
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	665368	666808	1033629		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_013954865.1|665368_666808_-	DNA cytosine methyltransferase	NA	F2Y1T1	Organic_Lake_phycodnavirus	41.5	4.1e-37
>prophage 37
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	671180	682471	1033629		Bacillus_phage(25.0%)	8	NA	NA
WP_013456635.1|671180_672068_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	38.4	4.1e-48
WP_013954869.1|672442_675175_+	cation-transporting P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	29.2	5.9e-77
WP_013954870.1|675424_677287_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_013954871.1|677289_677994_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.8	1.1e-19
WP_013954872.1|677971_679120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954873.1|679109_680000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954874.1|679986_680874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954875.1|680899_682471_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	33.3	2.0e-69
>prophage 38
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	691693	692302	1033629		Agrobacterium_phage(100.0%)	1	NA	NA
WP_013456602.1|691693_692302_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	37.6	8.6e-13
>prophage 39
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	698095	699889	1033629		Streptococcus_phage(100.0%)	1	NA	NA
WP_013954887.1|698095_699889_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.1	5.7e-20
>prophage 40
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	703521	772536	1033629	transposase,integrase,tRNA	Planktothrix_phage(25.0%)	50	693135:693158	737476:737499
693135:693158	attL	GTCTAATTGGTCTGTTTTATAGGC	NA	NA	NA	NA
WP_014829953.1|703521_705195_-|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_014829954.1|705146_706376_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_013954894.1|706551_708123_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_014829956.1|708185_709805_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_013954896.1|709917_711162_-	malate transporter	NA	NA	NA	NA	NA
WP_013954897.1|711392_712364_-	lactate dehydrogenase	NA	NA	NA	NA	NA
WP_004023902.1|712570_712807_-	biotin/lipoyl-binding protein	NA	NA	NA	NA	NA
WP_099620139.1|713123_714098_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_013954899.1|714117_715320_+	acetate/propionate family kinase	NA	NA	NA	NA	NA
WP_013954900.1|715328_716234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954901.1|716290_718555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954902.1|718852_720319_+	MFS transporter	NA	NA	NA	NA	NA
WP_013455927.1|720636_721653_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	33.6	8.4e-37
WP_013954903.1|721882_722719_+	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_013954904.1|722720_723557_+	deoxyribonuclease IV	NA	A0A1V0SHV6	Klosneuvirus	33.1	1.1e-29
WP_013954905.1|723588_725295_+	membrane protein	NA	NA	NA	NA	NA
WP_013456450.1|725309_725651_+	thioredoxin	NA	NA	NA	NA	NA
WP_013456570.1|725656_727372_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_013954907.1|727391_727796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013954908.1|728085_730272_+	P80 family lipoprotein	NA	NA	NA	NA	NA
WP_014829957.1|730336_731506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954911.1|731514_733617_+	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	28.8	4.8e-18
WP_013954912.1|733600_734668_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_013456037.1|734606_735590_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_013456278.1|735605_735884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954913.1|735891_737430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954914.1|737499_738768_-	GTPase ObgE	NA	NA	NA	NA	NA
737476:737499	attR	GCCTATAAAACAGACCAATTAGAC	NA	NA	NA	NA
WP_013954915.1|738879_739704_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_013954916.1|739989_740691_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_013954917.1|740709_742005_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	55.0	1.7e-114
WP_013954919.1|742728_743511_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_013954920.1|743629_744682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013456562.1|744725_745631_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_013954921.1|745620_746559_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.5	2.5e-19
WP_013954922.1|746549_747347_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	33.5	3.9e-21
WP_013456394.1|747521_747887_-	50S ribosomal protein L17	NA	NA	NA	NA	NA
WP_013456482.1|747886_748897_-	DNA-directed RNA polymerase subunit alpha	NA	NA	NA	NA	NA
WP_004023933.1|748916_749318_-	30S ribosomal protein S11	NA	NA	NA	NA	NA
WP_004023934.1|749337_749709_-	30S ribosomal protein S13	NA	NA	NA	NA	NA
WP_014829961.1|749715_749829_-	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_004023936.1|749844_750063_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_013954923.1|750069_750819_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_013456188.1|750857_751508_-	nucleoside monophosphate kinase	NA	A0A2K9L7B8	Tupanvirus	33.6	1.4e-08
WP_013456323.1|751501_752980_-	preprotein translocase subunit SecY	NA	NA	NA	NA	NA
WP_013456001.1|758342_759776_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_099620140.1|764992_765985_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_078086178.1|766867_767896_+|transposase	IS30 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.8	3.8e-21
WP_013954925.1|768895_769939_-	HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_013456526.1|770069_770504_-	50S ribosomal protein L15	NA	NA	NA	NA	NA
WP_013954703.1|770862_772536_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
>prophage 41
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	783334	784948	1033629		Bacillus_phage(50.0%)	2	NA	NA
WP_013954936.1|783334_783826_-	Holliday junction resolvase RecU	NA	A0A0S2MVB5	Bacillus_phage	33.5	5.7e-15
WP_013954937.1|783964_784948_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	54.6	2.2e-95
>prophage 42
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	794580	797340	1033629		Bacillus_virus(100.0%)	1	NA	NA
WP_075270972.1|794580_797340_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.2	3.1e-110
>prophage 43
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	803407	804328	1033629	integrase	Listeria_phage(100.0%)	1	793684:793700	809104:809120
793684:793700	attL	ATTCTTCTACTAAAAAG	NA	NA	NA	NA
WP_038582887.1|803407_804328_+|integrase	site-specific integrase	integrase	A8ATD6	Listeria_phage	48.0	1.0e-78
WP_038582887.1|803407_804328_+|integrase	site-specific integrase	integrase	A8ATD6	Listeria_phage	48.0	1.0e-78
809104:809120	attR	ATTCTTCTACTAAAAAG	NA	NA	NA	NA
>prophage 44
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	808813	811492	1033629		Staphylococcus_phage(100.0%)	1	NA	NA
WP_013954952.1|808813_811492_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	39.6	7.0e-91
>prophage 45
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	820781	823974	1033629	tRNA	Escherichia_phage(50.0%)	3	NA	NA
WP_013954960.1|820781_822173_+|tRNA	glutamate--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	25.2	6.6e-08
WP_013954961.1|822163_822571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013954963.1|822825_823974_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	52.4	6.4e-102
>prophage 46
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	827445	828863	1033629		Bacillus_phage(50.0%)	2	NA	NA
WP_013456213.1|827445_827685_-	hypothetical protein	NA	A0A172JI00	Bacillus_phage	40.9	4.6e-10
WP_013954967.1|827861_828863_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	23.1	5.0e-10
>prophage 47
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	832943	834305	1033629		Mycoplasma_phage(100.0%)	1	NA	NA
WP_014829971.1|832943_834305_-	peptidase M17	NA	Q6GYZ8	Mycoplasma_phage	56.4	3.1e-103
>prophage 48
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	837911	844138	1033629		Streptococcus_phage(50.0%)	5	NA	NA
WP_013456179.1|837911_840005_-	elongation factor G	NA	A0A1B0RXH7	Streptococcus_phage	25.2	1.8e-54
WP_013456121.1|840034_840505_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_099620142.1|840535_840949_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_013954975.1|841269_842487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829972.1|842524_844138_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.0	1.1e-54
>prophage 49
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	849143	852771	1033629		Bacillus_phage(100.0%)	2	NA	NA
WP_013954983.1|849143_850976_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.3	3.4e-28
WP_038582898.1|850986_852771_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.3	1.0e-29
>prophage 50
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	856184	857429	1033629	transposase	Enterobacteria_phage(100.0%)	1	NA	NA
WP_014829974.1|856184_857429_+|transposase	IS3 family transposase	transposase	Q6H9S6	Enterobacteria_phage	26.6	6.9e-09
>prophage 51
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	865626	873691	1033629		Aureococcus_anophage(50.0%)	2	NA	NA
WP_099620143.1|865626_870063_-	DNA-directed RNA polymerase subunit beta'	NA	A0A076FGB9	Aureococcus_anophage	23.5	1.2e-47
WP_013456481.1|870055_873691_-	DNA-directed RNA polymerase subunit beta	NA	W8W1V4	Invertebrate_iridescent_virus	26.9	2.0e-48
>prophage 52
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	877042	878512	1033629	tRNA	Klosneuvirus(100.0%)	1	NA	NA
WP_013456485.1|877042_878512_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	36.9	4.0e-80
>prophage 53
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	881906	884075	1033629		Cronobacter_phage(100.0%)	1	NA	NA
WP_013954992.1|881906_884075_+	AAA domain-containing protein	NA	K4FB40	Cronobacter_phage	34.4	1.1e-107
>prophage 54
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	887737	892211	1033629	tRNA	Paramecium_bursaria_Chlorella_virus(50.0%)	5	NA	NA
WP_013954997.1|887737_888835_+	DNA adenine methylase	NA	M1HGA9	Paramecium_bursaria_Chlorella_virus	31.6	6.5e-27
WP_013954999.1|889898_890189_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_013456497.1|890192_890876_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_013456054.1|890865_891216_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_013955000.1|891371_892211_-|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	23.7	9.1e-05
>prophage 55
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	904395	905640	1033629	transposase	Enterobacteria_phage(100.0%)	1	NA	NA
WP_038582814.1|904395_905640_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.0	5.3e-09
>prophage 56
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	910918	912142	1033629		Mycoplasma_phage(100.0%)	1	NA	NA
WP_013456172.1|910918_912142_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	43.2	4.1e-14
>prophage 57
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	916975	926294	1033629		Pelagibacter_phage(20.0%)	10	NA	NA
WP_013955028.1|916975_917788_-	NAD(+) synthase	NA	M1IPF8	Pelagibacter_phage	39.6	2.9e-32
WP_013955029.1|917897_918803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013955030.1|918804_919728_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_013955031.1|919773_921096_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	33.9	7.8e-67
WP_013455987.1|921138_922038_-	ATP-binding protein	NA	A0A0S2SXI8	Bacillus_phage	28.9	3.0e-06
WP_013955032.1|922046_923054_-	DNA damage-inducible protein DnaD	NA	NA	NA	NA	NA
WP_014829984.1|923103_923676_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_013955034.1|923677_924058_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.5	2.5e-18
WP_013955035.1|924349_925168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013955036.1|925169_926294_+	site-specific DNA-methyltransferase	NA	A0A1W6JMZ7	Lactococcus_phage	30.2	4.9e-22
>prophage 58
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	930455	933127	1033629		Cafeteria_roenbergensis_virus(50.0%)	3	NA	NA
WP_013456354.1|930455_931079_-	ribonuclease HII	NA	E3T5H8	Cafeteria_roenbergensis_virus	35.9	1.9e-23
WP_013456057.1|931103_932162_-	membrane protein	NA	NA	NA	NA	NA
WP_013955040.1|932209_933127_-	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.7	7.9e-10
>prophage 59
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	939050	944081	1033629		Streptococcus_phage(33.33%)	6	NA	NA
WP_013955044.1|939050_939776_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	37.4	8.4e-31
WP_013955045.1|939768_940671_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_013955046.1|940670_941318_-	dTMP kinase	NA	Q2Z0N0	Pseudomonas_phage	35.6	2.2e-22
WP_013955047.1|941333_941921_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_013456226.1|941923_942214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013955048.1|942230_944081_-	DNA polymerase III subunit gamma/tau	NA	E7DN81	Pneumococcus_phage	38.9	4.4e-52
>prophage 60
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	951591	952089	1033629		Tupanvirus(100.0%)	1	NA	NA
WP_099620146.1|951591_952089_-	adenine phosphoribosyltransferase	NA	A0A2K9L6J1	Tupanvirus	33.8	1.0e-11
>prophage 61
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	956436	1020339	1033629	transposase,integrase,tRNA	Mycoplasma_phage(16.67%)	51	1003586:1003603	1013620:1013637
WP_013456273.1|956436_957009_-	thymidine kinase	NA	Q6GYZ9	Mycoplasma_phage	70.1	9.4e-70
WP_013456539.1|957084_958455_-	peptidase M17	NA	Q6GYZ8	Mycoplasma_phage	73.1	1.5e-153
WP_078086180.1|958887_959916_+|transposase	IS30-like element ISMbov1 family transposase	transposase	A0A2K9V2S9	Faecalibacterium_phage	33.3	6.5e-21
WP_013955061.1|960126_961134_+	membrane protein	NA	NA	NA	NA	NA
WP_157764480.1|961679_962228_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_099620147.1|962403_963495_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_014829995.1|968697_969558_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_013456322.1|969550_970165_-	abortive infection protein	NA	NA	NA	NA	NA
WP_099620148.1|970347_971145_+	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_099620147.1|971187_972279_-	variable surface lipoprotein	NA	NA	NA	NA	NA
WP_013456322.1|972461_973076_+	abortive infection protein	NA	NA	NA	NA	NA
WP_014829995.1|973068_973929_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_099620150.1|975987_976518_+	collagen-like protein	NA	NA	NA	NA	NA
WP_013456123.1|976727_977477_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_013955063.1|977875_979720_+	ribonuclease J	NA	NA	NA	NA	NA
WP_013955064.1|979854_981006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014829996.1|981195_983613_+	DUF2779 domain-containing protein	NA	NA	NA	NA	NA
WP_013955066.1|983630_983939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013955067.1|984236_985658_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_013955068.1|985650_986964_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_013955069.1|986963_987269_-|tRNA	glutamyl-tRNA(Gln) amidotransferase	tRNA	NA	NA	NA	NA
WP_013955070.1|987274_988129_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_099620151.1|988140_988719_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.7	1.2e-11
WP_013955071.1|988708_989470_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_013456430.1|989462_990203_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_013456524.1|990212_990527_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_013456382.1|990700_992011_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_013456261.1|992013_992679_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_014829997.1|992749_993211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_013955073.1|993498_994632_-	DnaJ domain-containing protein	NA	A0A1V0SBY2	Catovirus	32.2	3.0e-27
WP_013955074.1|994869_995211_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_013955075.1|995384_996620_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	33.2	3.3e-59
WP_013955076.1|996630_997233_-|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
WP_013456246.1|997294_998197_+	DegV family protein	NA	NA	NA	NA	NA
WP_014829999.1|998357_998591_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_013955078.1|998630_999353_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_013456073.1|999352_1000429_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_013955080.1|1000554_1001127_-	cell division protein Fic	NA	NA	NA	NA	NA
WP_013955081.1|1001148_1002570_-	YitT family protein	NA	NA	NA	NA	NA
1003586:1003603	attL	TGATAATAGAAGTGAAAA	NA	NA	NA	NA
WP_013954660.1|1004024_1005413_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_099620152.1|1005728_1007696_+	type IIA DNA topoisomerase subunit B	NA	G3M9Z3	Bacillus_virus	41.6	2.3e-131
WP_013955085.1|1007818_1008133_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	39.0	1.7e-12
WP_013955086.1|1008185_1008632_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	37.4	1.8e-12
WP_099620153.1|1008752_1009820_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_013955088.1|1009902_1011576_+|transposase	IS1634-like element ISMbov3 family transposase	transposase	NA	NA	NA	NA
WP_013955090.1|1011880_1012870_-	DUF285 domain-containing protein	NA	NA	NA	NA	NA
WP_013456532.1|1013330_1014290_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
1013620:1013637	attR	TTTTCACTTCTATTATCA	NA	NA	NA	NA
WP_013955092.1|1014485_1014881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013955093.1|1015059_1016304_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	27.3	1.1e-09
WP_013955094.1|1016421_1019130_-	magnesium-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	26.1	3.7e-47
WP_013955095.1|1019250_1020339_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.7	2.2e-14
>prophage 62
NZ_CP023663	Mycoplasma bovis strain Ningxia-1 chromosome, complete genome	1033629	1028648	1031609	1033629	protease,tRNA	Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_013955097.1|1028648_1030679_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	46.5	3.8e-105
WP_013955098.1|1030748_1031609_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	R4TVK3	Phaeocystis_globosa_virus	29.3	2.6e-15
